Lcy04g008430 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g008430
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ACT domain-containing protein
Location	Chr04: 39351508 .. 39353229 (-)
RNA-Seq Expression	Lcy04g008430
Synteny	Lcy04g008430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAGGGAAAGCAAGCAAAAGGATCTGGTGGCGCGTGACCGGCGAGTGGAGGAGAGACGGCGGACGGCGGAGTTTCAATTGATTTTTCCGGTGGCTCTGAAATGGGTTCGAGAGAGCGAAAGAAAGCAGCAGCTTCTTCTCTGAATCATCACAAGTCCAAAGAAACTCGTGCATCCACAAGCTCTAGTGCTGTACTTTTCTCATCATTCAATTAATTTCATTTATTAAATAAATGCTTATTCACTCACTCACTCACTTTCCCCTTTTGAATTTCATGCTTCCAATTTTCAACTTTGTTTTCTCGAATTCGATCGATCGAAAACCGATTGAATCGTGTTCGGTTTTGTCTATTTGAAACCAACCATATATGTTTGTTTTTTAATCGACTGATTCCTACATCAGTTTGATTCGATCAATATACGTCTAAACGTACTTTGATTCATGATTATTTCTCCGTAAAAATTGAAAATTTACTAGTTAGTAGGAAATTTTTCTTGTCTACCTAAACTTTTGACATCCAAGGAAGGGAAGAGAAGAAAAACTTTTTTCTTTTTATTTTTTCTTTAGAAATTAGAATAAATGCAAAACACATATTAGGGTGGGTAGTAAGAATTTTTTACCAGTCAAAAGTATTTGTCTCAAAACCAATATACTTTCCAAAAAAAATTCTTGGTAGTAAAGAAAATGATAAATTTTGTTGGTTAGTTTTTTTTTTTTCCCTAAAAAACTCTTGGAAACATAAAAAAGATTCATGGTAGTGAAGAAAGTGATAAATTTTGTTAGTTTTTTGTGTTAATATTTATTTACTAGATTCATAACTTATACTATTAATATGGAATGAAAGTATATGGATTCAAATTTTATTTTTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAAATTTTGAACATGTGCAGGTGGTGAATGTGGAGAGTTTAGAGAGGGGATTTCTAATAAACGTGTTTTTGGAAAGGAATTCTCCGGGATTGTTGGTTCGGATTCTAGAAGCCTTTGAGAAATTGGGACTCGAAGTCCTCGACGCCAACGTGTCTTGTTCCGATTGCTTCCAACTCCAGGCTGTTGGGGAAGAGGTCCGATTTTTATCTCTTTTAGAATATTACATCACATGTAAAATGATCGATAGACGAAAGGAACCTAATTCAAAGACATTTATTTTCTATTTTAAGATTAAAAGTTTGAAATTCTCAAGTAAAATACAAAGTGAGAAGAAAGTAGGAATCCATGAGGCAGTTTAAAGAGATTATTAACAAATTGATAATAATTATTCAACAAGGTGAAATAAATTCCATCTTCTAATTCCCCTATATATATGATTGATCTATATTTATGCATCAATAGAAATCAAGACTGCTCTTGATAATAATTTTATTTTCAGTGTCTTCTATTTTTAGAAATCTTGTTTTATAAAGTAATTAATTACAATCTTGTAACATTTCTAAATCATAAATATATTTTTGTTTCTAACACTTTTTTTTTTTTTTTACAGAATGAAGGCACCAAAATCATAAAGCCCCAAGTGGTGAAAAAAGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAATGAGCAGGCATGAAATATTACATTATTTATTTTCCTTTTTTCTTTTTCTTTTTCTTTTCCCCCAAACAGAACATCTCTTCTGTGTATAGGGTAACAAATTTTCAACTCTTCCAAGTG

mRNA sequence

GCAAGGGAAAGCAAGCAAAAGGATCTGGTGGCGCGTGACCGGCGAGTGGAGGAGAGACGGCGGACGGCGGAGTTTCAATTGATTTTTCCGGTGGCTCTGAAATGGGTTCGAGAGAGCGAAAGAAAGCAGCAGCTTCTTCTCTGAATCATCACAAGTCCAAAGAAACTCGTGCATCCACAAGCTCTAGTGCTGTGGTGAATGTGGAGAGTTTAGAGAGGGGATTTCTAATAAACGTGTTTTTGGAAAGGAATTCTCCGGGATTGTTGGTTCGGATTCTAGAAGCCTTTGAGAAATTGGGACTCGAAGTCCTCGACGCCAACGTGTCTTGTTCCGATTGCTTCCAACTCCAGGCTGTTGGGGAAGAGAATGAAGGCACCAAAATCATAAAGCCCCAAGTGGTGAAAAAAGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAATGAGCAGGCATGAAATATTACATTATTTATTTTCCTTTTTTCTTTTTCTTTTTCTTTTCCCCCAAACAGAACATCTCTTCTGTGTATAGGGTAACAAATTTTCAACTCTTCCAAGTG

Coding sequence (CDS)

ATGGGTTCGAGAGAGCGAAAGAAAGCAGCAGCTTCTTCTCTGAATCATCACAAGTCCAAAGAAACTCGTGCATCCACAAGCTCTAGTGCTGTGGTGAATGTGGAGAGTTTAGAGAGGGGATTTCTAATAAACGTGTTTTTGGAAAGGAATTCTCCGGGATTGTTGGTTCGGATTCTAGAAGCCTTTGAGAAATTGGGACTCGAAGTCCTCGACGCCAACGTGTCTTGTTCCGATTGCTTCCAACTCCAGGCTGTTGGGGAAGAGAATGAAGGCACCAAAATCATAAAGCCCCAAGTGGTGAAAAAAGCAGTAAAGCAAGCAATCAAGGAATGGAGTGAAAGTAATGAGCAGGCATGA

Protein sequence

MGSRERKKAAASSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNEQA

Homology

[Close]

BLAST of Lcy04g008430 vs. ExPASy TrEMBL
Match: A0A6J1IM47 (uncharacterized protein LOC111477723 OS=Cucurbita maxima OX=3661 GN=LOC111477723 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 111/118 (94.07%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MGSRERKKAAASSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAASSLNHHKSKE RASTSSSAVVNVE LERGFLINVF ERNSPGLLVRILE
Sbjct: 1   MGSRERKKAAASSLNHHKSKEFRASTSSSAVVNVEDLERGFLINVFSERNSPGLLVRILE 60

Query: 61  AFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNEQA 119
           AFEKLGLEVLDA+VSCSDCFQLQAVGEENEGTKIIK QVVK AVKQAIKEWSESN QA
Sbjct: 61  AFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQA 118

[Close]

BLAST of Lcy04g008430 vs. ExPASy TrEMBL
Match: A0A6J1GFJ5 (uncharacterized protein LOC111453491 OS=Cucurbita moschata OX=3662 GN=LOC111453491 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.1e-49
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MGSRERKKAAASSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAASSLNHHKSKE RASTSSSAVVNVE+LERGFLINVF ERNSPGLLV+ILE
Sbjct: 1   MGSRERKKAAASSLNHHKSKEFRASTSSSAVVNVENLERGFLINVFSERNSPGLLVQILE 60

Query: 61  AFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNEQA 119
           AFEKLGLEVLDA+VSCSDCFQLQAVGEENEGTKIIK QVVK AVKQAIKEWSESN QA
Sbjct: 61  AFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQA 118

[Close]

BLAST of Lcy04g008430 vs. ExPASy TrEMBL
Match: A0A6J1HSD7 (uncharacterized protein LOC111466169 OS=Cucurbita maxima OX=3661 GN=LOC111466169 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.0e-44
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MGSRERKKAAA-SSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAA SS+NH K  E  ASTSSSAVVNVESL RGFLINV++E+NSPGLLVRIL
Sbjct: 41  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYVEKNSPGLLVRIL 100

Query: 61  EAFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNEQ 118
           EAFEKLGLEVLDANVSCSDCFQLQAVGEENE TK++KPQVVKKAVKQAIKEWSESN Q
Sbjct: 101 EAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKMVKPQVVKKAVKQAIKEWSESNGQ 158

[Close]

BLAST of Lcy04g008430 vs. ExPASy TrEMBL
Match: A0A6J1CQF9 (uncharacterized protein LOC111013797 OS=Momordica charantia OX=3673 GN=LOC111013797 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.2e-44
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MGSRERKKAAASSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAASS N HKSKE RASTSSSA VNVES+ERGF+INV+LERNSPGLLVRILE
Sbjct: 1   MGSRERKKAAASSQN-HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILE 60

Query: 61  AFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSES 115
            FEKLGLEVLDA VSCSD FQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSES
Sbjct: 61  VFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSES 113

[Close]

BLAST of Lcy04g008430 vs. ExPASy TrEMBL
Match: A0A6J1EGT3 (uncharacterized protein LOC111432414 OS=Cucurbita moschata OX=3662 GN=LOC111432414 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.8e-44
Identity = 102/118 (86.44%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MGSRERKKAAA-SSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAA SS+NH K  E  ASTSSSAVVNVESL RGFLINV+LE+NSPGLLVRIL
Sbjct: 8   MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRIL 67

Query: 61  EAFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNEQ 118
           +AFEKLGLEVLDANVSCSDCFQLQAVGEENE TKI+KP+VVK+AVKQAIKEWSESN Q
Sbjct: 68  QAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPRVVKRAVKQAIKEWSESNGQ 125

[Close]

BLAST of Lcy04g008430 vs. NCBI nr
Match: XP_022977370.1 (uncharacterized protein LOC111477723 [Cucurbita maxima])

HSP 1 Score: 203.8 bits (517), Expect = 8.4e-49
Identity = 111/118 (94.07%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MGSRERKKAAASSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAASSLNHHKSKE RASTSSSAVVNVE LERGFLINVF ERNSPGLLVRILE
Sbjct: 1   MGSRERKKAAASSLNHHKSKEFRASTSSSAVVNVEDLERGFLINVFSERNSPGLLVRILE 60

Query: 61  AFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNEQA 119
           AFEKLGLEVLDA+VSCSDCFQLQAVGEENEGTKIIK QVVK AVKQAIKEWSESN QA
Sbjct: 61  AFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQA 118

[Close]

BLAST of Lcy04g008430 vs. NCBI nr
Match: XP_022950375.1 (uncharacterized protein LOC111453491 [Cucurbita moschata])

HSP 1 Score: 202.6 bits (514), Expect = 1.9e-48
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 0


Query: 1   MGSRERKKAAASSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAASSLNHHKSKE RASTSSSAVVNVE+LERGFLINVF ERNSPGLLV+ILE
Sbjct: 1   MGSRERKKAAASSLNHHKSKEFRASTSSSAVVNVENLERGFLINVFSERNSPGLLVQILE 60

Query: 61  AFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNEQA 119
           AFEKLGLEVLDA+VSCSDCFQLQAVGEENEGTKIIK QVVK AVKQAIKEWSESN QA
Sbjct: 61  AFEKLGLEVLDADVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQA 118

[Close]

BLAST of Lcy04g008430 vs. NCBI nr
Match: XP_038882922.1 (uncharacterized protein LOC120074022 [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 1.6e-47
Identity = 111/118 (94.07%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 1   MGSRERKKAAASSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRILE 60
           MGSRERKKAAASS  HHKSKE RASTSSSA+VNVESLERGFLINVFLERNSPGLLVRILE
Sbjct: 1   MGSRERKKAAASS--HHKSKEFRASTSSSAMVNVESLERGFLINVFLERNSPGLLVRILE 60

Query: 61  AFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNEQA 119
           AFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIK QVVK AVKQAIKEWSESN QA
Sbjct: 61  AFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKAQVVKNAVKQAIKEWSESNGQA 116

[Close]

BLAST of Lcy04g008430 vs. NCBI nr
Match: KAG6595565.1 (hypothetical protein SDJN03_12118, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 105/118 (88.98%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MGSRERKKAAA-SSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAA SS+NH K  E  ASTSSSAVVNVESL RGFLINV+LE+NSPGLLVRIL
Sbjct: 63  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYLEKNSPGLLVRIL 122

Query: 61  EAFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNEQ 118
           EAFEKLGLEVLDANVSCSDCFQLQAVGEENE TKI+KPQVVKKAVKQAIKEWSESN Q
Sbjct: 123 EAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKIVKPQVVKKAVKQAIKEWSESNGQ 180

[Close]

BLAST of Lcy04g008430 vs. NCBI nr
Match: XP_022966518.1 (uncharacterized protein LOC111466169 [Cucurbita maxima])

HSP 1 Score: 187.6 bits (475), Expect = 6.3e-44
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MGSRERKKAAA-SSLNHHKSKETRASTSSSAVVNVESLERGFLINVFLERNSPGLLVRIL 60
           MGSRERKKAAA SS+NH K  E  ASTSSSAVVNVESL RGFLINV++E+NSPGLLVRIL
Sbjct: 41  MGSRERKKAAASSSMNHEKPTEFDASTSSSAVVNVESLVRGFLINVYVEKNSPGLLVRIL 100

Query: 61  EAFEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNEQ 118
           EAFEKLGLEVLDANVSCSDCFQLQAVGEENE TK++KPQVVKKAVKQAIKEWSESN Q
Sbjct: 101 EAFEKLGLEVLDANVSCSDCFQLQAVGEENEDTKMVKPQVVKKAVKQAIKEWSESNGQ 158

[Close]

BLAST of Lcy04g008430 vs. TAIR 10
Match: AT2G40435.1 (BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.4 bits (215), Expect = 8.2e-18
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 5   ERKKAAASSLNHHKSKETRASTSS---SAVVNVESLERGFLINVFLERNSPGLLVRILEA 64
           ++ K      N   + E  +S  +   + +V VE+L++GF+INVF  +N PG+LV +LEA
Sbjct: 41  QKLKQKVERFNQDPTAEQSSSEPTDPKTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEA 100

Query: 65  FEKLGLEVLDANVSCSDCFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSESNE 117
           FE +GL VL+A  SC+D F L A+G ENE  + +  + VK+AV  AI+ W E N+
Sbjct: 101 FEDIGLNVLEARASCTDSFSLHAMGLENEDGENMDAEAVKQAVTDAIRSWGEIND 155

[Close]

BLAST of Lcy04g008430 vs. TAIR 10
Match: AT3G56220.1 (transcription regulators )

HSP 1 Score: 80.9 bits (198), Expect = 7.7e-16
Identity = 46/114 (40.35%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 5   ERKKAAASSLNHHKSKET--RASTSSSAVVNVESLERGFLINVFLERNSPGLLVRILEAF 64
           ++ K     +N+  + E   R S+  + +V VE+LE+GF+I V   +N  G+LV +LE F
Sbjct: 42  KKLKQKVEKINNATTSEQSFRESSDPNPMVTVETLEKGFMIKVMSRKNEAGMLVCVLETF 101

Query: 65  EKLGLEVLDANVSCSDCFQLQAVG-EENEGTKIIKPQVVKKAVKQAIKEWSESN 116
           E LGL+V++A VSC+D F L A+G   N+    I  + VK+AV +AI+ WS+S+
Sbjct: 102 EDLGLDVVEARVSCTDTFSLHAIGSSNNDDGDCIDAEAVKQAVAEAIRTWSDSH 155

[Close]

BLAST of Lcy04g008430 vs. TAIR 10
Match: AT1G29270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 98 Blast hits to 98 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 8.8e-04
Identity = 27/82 (32.93%), Postives = 40/82 (48.78%), Query Frame = 0


Query: 32  VNVESLERGFLINVFLERNSPGLLVRILEAFEKLGLEVLDANVSCSDCFQLQAVGEENEG 91
           V VE +   F + +   R     LV ILEAFE++GL V  A  SC D F ++A+      
Sbjct: 73  VKVEKIGEMFQVKIKSPRGENN-LVNILEAFEEMGLNVAQARASCLDSFAMEAIVAPQSK 132

Query: 92  TKI-----IKPQVVKKAVKQAI 109
            K+     +   +VK  VK ++
Sbjct: 133 DKLCSVDDLTQTLVKALVKPSV 153

The following BLAST results are available for this feature:

BLAST of Lcy04g008430 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g008430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IM47	4.1e-49	94.07	uncharacterized protein LOC111477723 OS=Cucurbita maxima OX=3661 GN=LOC111477723...	[more]
A0A6J1GFJ5	9.1e-49	93.22	uncharacterized protein LOC111453491 OS=Cucurbita moschata OX=3662 GN=LOC1114534...	[more]
A0A6J1HSD7	3.0e-44	87.29	uncharacterized protein LOC111466169 OS=Cucurbita maxima OX=3661 GN=LOC111466169...	[more]
A0A6J1CQF9	5.2e-44	91.23	uncharacterized protein LOC111013797 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1EGT3	8.8e-44	86.44	uncharacterized protein LOC111432414 OS=Cucurbita moschata OX=3662 GN=LOC1114324...	[more]

BLAST of Lcy04g008430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977370.1	8.4e-49	94.07	uncharacterized protein LOC111477723 [Cucurbita maxima]	[more]
XP_022950375.1	1.9e-48	93.22	uncharacterized protein LOC111453491 [Cucurbita moschata]	[more]
XP_038882922.1	1.6e-47	94.07	uncharacterized protein LOC120074022 [Benincasa hispida]	[more]
KAG6595565.1	1.3e-44	88.98	hypothetical protein SDJN03_12118, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022966518.1	6.3e-44	87.29	uncharacterized protein LOC111466169 [Cucurbita maxima]	[more]

BLAST of Lcy04g008430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40435.1	8.2e-18	41.74	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G5...	[more]
AT3G56220.1	7.7e-16	40.35	transcription regulators	[more]
AT1G29270.1	8.8e-04	32.93	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 12..114
None	No IPR available	PANTHER	PTHR31945:SF45	TRANSCRIPTION FACTOR BHLH FAMILY-RELATED	coord: 12..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g008430.1	Lcy04g008430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding