Lcy04g008400 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g008400
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	5'-phosphoribosylglycinamide transformylase
Location	Chr04: 39310591 .. 39311338 (-)
RNA-Seq Expression	Lcy04g008400
Synteny	Lcy04g008400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTGAGTGCAAGTCTTGAAGGGGAAGTTTCAAAAACTGTGATTAGGAAGAAGAAACTTGCTGTCTTCGTCTCCGGTGGAGGCTCAAACTTCCGTTCAATACACGAGGCATCTCTTGAAGGATCAATCCATGGAGAAATCGTTGTTCTAGTCACTAACAAAAGCGATTGTGGTGGTGCAGAATATGCAAGAACTAACAACATTCCAGTTATTTTGTTTCCCAAAACAAAAGATGAACATGATGGCTTATCTGCTTCTTCTGATCTTGTAGCTACAACCCTTAGAAGTTTTGAGATAGATTTCATTCTTCTAGCTGGATACCTAAAACTTATACCATCAGAATTGATCCAAGCTTTTTCCAAATCTATAATCAATATACACCCATCACTTCTTCCAGCTTTTGGAGGCAAAGGGTATTATGGAATGAAGGTGCACAAGACAGTGATTGCCTCTGGAGCTCGATTGTCGGGTCCGACATTCATTTGGTCGATGAGCACTTTGACACTGTGGACGGATTCTTGCTCAAAGAGTAGTTCCTGTGCTTGCAAATGATGCAGCAGAGGATCTGGCAGGTAGAGTTCTTAAGGAGGAGCATCGTCTCTATGTCGAGGTAGTTGCAGCGTTGTGTGACGAACGGATCGTTTGGAGAGCAGACGGTGTTCCTCTCATTCGAGGCAAAGAAAATCCTGATGAATTGGTCTAACGAGCTAGAGAAGTGATCGGAATCTTGTGGCTCCAATGAGAT

mRNA sequence

ATGGTTGTGAGTGCAAGTCTTGAAGGGGAAGTTTCAAAAACTGTGATTAGGAAGAAGAAACTTGCTGTCTTCGTCTCCGGTGGAGGCTCAAACTTCCGTTCAATACACGAGGCATCTCTTGAAGGATCAATCCATGGAGAAATCGTTGTTCTAGTCACTAACAAAAGCGATTGTGGTGGTGCAGAATATGCAAGAACTAACAACATTCCAGTTATTTTGTTTCCCAAAACAAAAGATGAACATGATGGCTTATCTGCTTCTTCTGATCTTGTAGCTACAACCCTTAGAAGTTTTGAGATAGATTTCATTCTTCTAGCTGGATACCTAAAACTTATACCATCAGAATTGATCCAAGCTTTTTCCAAATCTATAATCAATATACACCCATCACTTCTTCCAGCTTTTGGAGGCAAAGGGTATTATGGAATGAAGGTGCACAAGACAGTGATTGCCTCTGGAGCTCGATTGTCGGTAGTTCCTGTGCTTGCAAATGATGCAGCAGAGGATCTGGCAGGTAGAGTTCTTAAGGAGGAGCATCGTCTCTATGTCGAGGTAGTTGCAGCGTTGTGTGACGAACGGATCGTTTGGAGAGCAGACGGTGTTCCTCTCATTCGAGGCAAAGAAAATCCTGATGAATTGGTCTAACGAGCTAGAGAAGTGATCGGAATCTTGTGGCTCCAATGAGAT

Coding sequence (CDS)

ATGGTTGTGAGTGCAAGTCTTGAAGGGGAAGTTTCAAAAACTGTGATTAGGAAGAAGAAACTTGCTGTCTTCGTCTCCGGTGGAGGCTCAAACTTCCGTTCAATACACGAGGCATCTCTTGAAGGATCAATCCATGGAGAAATCGTTGTTCTAGTCACTAACAAAAGCGATTGTGGTGGTGCAGAATATGCAAGAACTAACAACATTCCAGTTATTTTGTTTCCCAAAACAAAAGATGAACATGATGGCTTATCTGCTTCTTCTGATCTTGTAGCTACAACCCTTAGAAGTTTTGAGATAGATTTCATTCTTCTAGCTGGATACCTAAAACTTATACCATCAGAATTGATCCAAGCTTTTTCCAAATCTATAATCAATATACACCCATCACTTCTTCCAGCTTTTGGAGGCAAAGGGTATTATGGAATGAAGGTGCACAAGACAGTGATTGCCTCTGGAGCTCGATTGTCGGTAGTTCCTGTGCTTGCAAATGATGCAGCAGAGGATCTGGCAGGTAGAGTTCTTAAGGAGGAGCATCGTCTCTATGTCGAGGTAGTTGCAGCGTTGTGTGACGAACGGATCGTTTGGAGAGCAGACGGTGTTCCTCTCATTCGAGGCAAAGAAAATCCTGATGAATTGGTCTAA

Protein sequence

MVVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGGAEYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAFSKSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLSVVPVLANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDELV

Homology

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BLAST of Lcy04g008400 vs. ExPASy Swiss-Prot
Match: P52423 (Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Vigna unguiculata OX=3917 GN=PUR3 PE=2 SV=2)

HSP 1 Score: 299.7 bits (766), Expect = 2.7e-80
Identity = 155/223 (69.51%), Postives = 176/223 (78.92%), Query Frame = 0


Query: 12  SKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGGAEYARTNNIPV 71
           ++  +R+KKLAVFVSGGGSNFRSIHEAS +GS+HG++ VLVTNKS+CGGA+YAR N IPV
Sbjct: 92  AQVTVRRKKLAVFVSGGGSNFRSIHEASKKGSLHGDVTVLVTNKSECGGAQYARNNGIPV 151

Query: 72  ILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAFSKSIINIHPSL 131
           ILFPK KDE  GLS   DLV  TLR FE+DF+LLAGYLKLIP ELI+AF +SI NIHPSL
Sbjct: 152 ILFPKAKDEPKGLS-PCDLV-DTLRKFEVDFVLLAGYLKLIPVELIRAFERSIFNIHPSL 211

Query: 132 LPAFGGKGYYGMKVHKTVIASGARLS--------------------VVPVLANDAAEDLA 191
           LPAFGGKGYYGMKVHK VIASGAR S                    VVPVLAND AE+LA
Sbjct: 212 LPAFGGKGYYGMKVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVLANDTAEELA 271

Query: 192 GRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDELV 215
            RVL EEH+LYVEVV ALC+ERIVWR DGVPLI+ +ENP+E +
Sbjct: 272 ARVLNEEHQLYVEVVEALCEERIVWRKDGVPLIQSRENPNEFL 312

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BLAST of Lcy04g008400 vs. ExPASy Swiss-Prot
Match: P52422 (Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PUR3 PE=2 SV=2)

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-69
Identity = 135/217 (62.21%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 17  RKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGGAEYARTNNIPVILFPK 76
           R+KKLAVFVSGGGSNFR IHE   +GS++G++V+LVTNK DCGGAEYAR+N IPV++FPK
Sbjct: 76  RRKKLAVFVSGGGSNFRKIHEGCSDGSVNGDVVLLVTNKKDCGGAEYARSNGIPVLVFPK 135

Query: 77  TKDE-HDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAFSKSIINIHPSLLPAF 136
            K E  DGLS S   +   LR + +DF+LLAGYLKLIP EL+QAF K I+NIHP+LLPAF
Sbjct: 136 AKREPSDGLSPSE--LVDVLRKYGVDFVLLAGYLKLIPVELVQAFPKRILNIHPALLPAF 195

Query: 137 GGKGYYGMKVHKTVIASGARL--------------------SVVPVLANDAAEDLAGRVL 196
           GGKG YG+KVHK V+ SGAR                     S V V+AND  E+LA RVL
Sbjct: 196 GGKGLYGIKVHKAVLESGARYSGPTIHFVNEEYDTGRILAQSAVRVIANDTPEELAKRVL 255

Query: 197 KEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
            EEH+LYVEVV A+C+ERI WR DGVPLI+ K+NPDE
Sbjct: 256 HEEHKLYVEVVGAICEERIKWREDGVPLIQNKQNPDE 290

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BLAST of Lcy04g008400 vs. ExPASy Swiss-Prot
Match: Q42805 (Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Glycine max OX=3847 GN=PUR3 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.4e-59
Identity = 127/221 (57.47%), Postives = 152/221 (68.78%), Query Frame = 0


Query: 12  SKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGGAEYARTNNIPV 71
           ++  +R+KKL VFVSGGG+NFR+IHEA+  GS+HG+++VLVTNKSDCGGAEYAR N IPV
Sbjct: 79  AQVTVRRKKLGVFVSGGGTNFRAIHEATKRGSLHGDVLVLVTNKSDCGGAEYARNNGIPV 138

Query: 72  ILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAFSKSIINIHPSL 131
           IL+  +KDE +G    SDLV  TLR FE+DFILLAGYL L       +  K  I      
Sbjct: 139 ILYHISKDESNG----SDLV-DTLRKFEVDFILLAGYLNLYQWN-DPSLQKIYIQHSSIT 198

Query: 132 LPAFGGKGYYGMKVHKTVIASGARLS--------------------VVPVLANDAAEDLA 191
             +F  +G +GMKVHK VIASGAR S                    VVPV AND  E+LA
Sbjct: 199 SSSFWRQGIHGMKVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVQANDTVEELA 258

Query: 192 GRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
            RVLKEEH+LYVEVV ALC+ER+VWR DGVPLI+ KENP+E
Sbjct: 259 ARVLKEEHQLYVEVVEALCEERVVWRQDGVPLIQSKENPNE 293

[Close]

BLAST of Lcy04g008400 vs. ExPASy Swiss-Prot
Match: P43846 (Phosphoribosylglycinamide formyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=purN PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-19
Identity = 64/207 (30.92%), Postives = 109/207 (52.66%), Query Frame = 0


Query: 19  KKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGGAEYARTNNIPVILFPKTK 78
           KK+AV +SG G+N ++I +A   G I  +I  +++NK+D  G   A+   IP  +F + K
Sbjct: 2   KKIAVLISGQGTNLQTIIDACHSGDIPAKIACVISNKADAYGLVRAKQAQIPQAVFLR-K 61

Query: 79  DEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAFSKSIINIHPSLLPAFGGK 138
           +  + L    D +   L+S  +D I+LAGY+K++  +  Q F+  I+NIHPSLLP + G 
Sbjct: 62  NFSNNLE-MDDAIGDYLQSLAVDLIVLAGYMKILTPKFTQRFAGKILNIHPSLLPKYAGL 121

Query: 139 GYY-----------GMKVH--KTVIASGARL--SVVPVLANDAAEDLAGRVLKEEHRLYV 198
             Y           G  VH     +  GA +  + VP+   D+ E++  R  ++E+++Y 
Sbjct: 122 NTYQRAIEAGDNEHGTTVHFVNEEVDGGAIVLQAKVPIFPEDSIEEVEARTREQEYQIYP 181

Query: 199 EVVAALCDERIVWRADGVPLIRGKENP 211
            V+    + R+  + D +  + GK  P
Sbjct: 182 LVIKWFTEGRLRLK-DNLAYLDGKALP 205

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BLAST of Lcy04g008400 vs. ExPASy Swiss-Prot
Match: P12040 (Phosphoribosylglycinamide formyltransferase OS=Bacillus subtilis (strain 168) OX=224308 GN=purN PE=3 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-17
Identity = 65/187 (34.76%), Postives = 90/187 (48.13%), Query Frame = 0


Query: 19  KKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGGAEYARTNNIPVILF-PKT 78
           KK AVF SG GSNF +I     E +      +LV +K      E A   +IP   F PK+
Sbjct: 2   KKFAVFASGNGSNFEAIVTRLKEENWDASAALLVCDKPQAKVIERAEAFHIPSFAFEPKS 61

Query: 79  KDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAFSKSIINIHPSLLPAFGG 138
              ++  +A    +   LR  E++ I LAGY++LI   L+QA+   IINIHPSLLPAF G
Sbjct: 62  ---YENKAAFEQAIIEQLRLHEVELIALAGYMRLIGDTLLQAYGGKIINIHPSLLPAFPG 121

Query: 139 KGYYGMKVHKTVIASGARLSVV-------PVLA--------NDAAEDLAGRVLKEEHRLY 190
               G      V  +G  +  V       P++A        +D  E +  R+ K EH+ Y
Sbjct: 122 IDAVGQAFRAGVKVAGITVHYVDEGMDTGPIIAQKAIEIDEHDTLETIEQRIHKLEHKWY 181

[Close]

BLAST of Lcy04g008400 vs. ExPASy TrEMBL
Match: A0A6J1GQR1 (phosphoribosylglycinamide formyltransferase, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456613 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 6.0e-91
Identity = 186/232 (80.17%), Postives = 196/232 (84.48%), Query Frame = 0


Query: 1   MVVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGG 60
           +V SASLEG+VS+TVIRKKKLAVFVSGGGSNFRSIHEAS+EGSIHGEI V+VTNKS CGG
Sbjct: 64  IVASASLEGDVSRTVIRKKKLAVFVSGGGSNFRSIHEASVEGSIHGEIGVVVTNKSSCGG 123

Query: 61  AEYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAF 120
           AEYAR+ NIPVILFPKTKDE  GLSA SDLVA TLRSFEIDFILLAGYLKLIP ELIQA+
Sbjct: 124 AEYARSKNIPVILFPKTKDEPHGLSA-SDLVA-TLRSFEIDFILLAGYLKLIPLELIQAY 183

Query: 121 SKSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLS--------------------VVP 180
           SKSIINIHPSLLPAFGGKGYYGMKVHK VIASGAR S                    VVP
Sbjct: 184 SKSIINIHPSLLPAFGGKGYYGMKVHKAVIASGARFSGPTIHLVDENFDTGKILAQRVVP 243

Query: 181 VLANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
           VLANDAAEDLA RVLKEEHRLYVEVVAALCD+RIVWR DGVPLI+ K+ P E
Sbjct: 244 VLANDAAEDLAARVLKEEHRLYVEVVAALCDDRIVWREDGVPLIQSKDKPGE 293

[Close]

BLAST of Lcy04g008400 vs. ExPASy TrEMBL
Match: A0A6J1JYY4 (phosphoribosylglycinamide formyltransferase, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488685 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.3e-90
Identity = 184/232 (79.31%), Postives = 196/232 (84.48%), Query Frame = 0


Query: 1   MVVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGG 60
           +V S+SLEG+VS+ VIRKKKLAVFVSGGGSNFRSIHEAS+EGSIHGEI V+VTNKS CGG
Sbjct: 64  VVASSSLEGDVSRIVIRKKKLAVFVSGGGSNFRSIHEASVEGSIHGEIGVVVTNKSGCGG 123

Query: 61  AEYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAF 120
           AEYAR+ NIPVILFPKTKDE  GLSA SDLVA TLRSFEIDFILLAGYLKLIP ELIQA+
Sbjct: 124 AEYARSKNIPVILFPKTKDEPHGLSA-SDLVA-TLRSFEIDFILLAGYLKLIPLELIQAY 183

Query: 121 SKSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLS--------------------VVP 180
           SKSIINIHPSLLP+FGGKGYYGMKVHK VIASGAR S                    VVP
Sbjct: 184 SKSIINIHPSLLPSFGGKGYYGMKVHKAVIASGARFSGPTIHLVDEHFDTGKILAQRVVP 243

Query: 181 VLANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
           VLANDAAEDLA RVLKEEH LYVEVVAALCD+RIVWR DGVPLI+ K+NPDE
Sbjct: 244 VLANDAAEDLAARVLKEEHHLYVEVVAALCDDRIVWREDGVPLIQSKDNPDE 293

[Close]

BLAST of Lcy04g008400 vs. ExPASy TrEMBL
Match: A0A0A0K7R9 (Formyl_trans_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G450470 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 6.6e-90
Identity = 180/232 (77.59%), Postives = 198/232 (85.34%), Query Frame = 0


Query: 1   MVVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGG 60
           MVVSASL+GEVSKTVI+KKKLAVFVSGGGSNFRSIHEASLEGS+HGEIVV+VTNKS CGG
Sbjct: 62  MVVSASLKGEVSKTVIQKKKLAVFVSGGGSNFRSIHEASLEGSVHGEIVVVVTNKSGCGG 121

Query: 61  AEYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAF 120
           AEYAR+ NIPV+LFPKTKDE +GLSA S+LVA TL+ FEIDFILLAGYLKLIP ELIQA+
Sbjct: 122 AEYARSKNIPVVLFPKTKDEPNGLSA-SELVA-TLKHFEIDFILLAGYLKLIPLELIQAY 181

Query: 121 SKSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLS--------------------VVP 180
           SKSI+NIHPSLLPAFGGKGYYGMKVHK V+ SGAR S                    VVP
Sbjct: 182 SKSIVNIHPSLLPAFGGKGYYGMKVHKAVVNSGARFSGATIHLVDEHFDTGRILAQRVVP 241

Query: 181 VLANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
           VLAND+AEDLA RVLKEEH LY EVVAALCDERI+WR+DGVPLI+ KE+P+E
Sbjct: 242 VLANDSAEDLAARVLKEEHGLYAEVVAALCDERIIWRSDGVPLIQSKEHPNE 291

[Close]

BLAST of Lcy04g008400 vs. ExPASy TrEMBL
Match: A0A1S3CGP8 (phosphoribosylglycinamide formyltransferase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500692 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.5e-89
Identity = 180/231 (77.92%), Postives = 195/231 (84.42%), Query Frame = 0


Query: 2   VVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGGA 61
           VVSASLEGEVSKTVI+KKKLAVFVSGGGSNFRSIHEASLEG +HGEIVV+VTNKS CGGA
Sbjct: 64  VVSASLEGEVSKTVIQKKKLAVFVSGGGSNFRSIHEASLEGLVHGEIVVVVTNKSSCGGA 123

Query: 62  EYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAFS 121
           EYAR+ NIPV+LFPKTKDE  GLSA S+LVA TLR FEIDFILLAGYLKLIP ELIQA+S
Sbjct: 124 EYARSKNIPVLLFPKTKDEPHGLSA-SELVA-TLRHFEIDFILLAGYLKLIPLELIQAYS 183

Query: 122 KSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLS--------------------VVPV 181
           K I+NIHPSLLPAFGGKGYYGMKVHK V+ SGAR S                    VVPV
Sbjct: 184 KCILNIHPSLLPAFGGKGYYGMKVHKAVVNSGARFSGATIHLVDEHFDTGRILAQRVVPV 243

Query: 182 LANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
           L+ND+AEDLA RVLKEEHRLY EVVAALCDERI+WR+DGVPLI+ KENP+E
Sbjct: 244 LSNDSAEDLAARVLKEEHRLYAEVVAALCDERIIWRSDGVPLIQSKENPNE 292

[Close]

BLAST of Lcy04g008400 vs. ExPASy TrEMBL
Match: A0A5D3BY35 (Phosphoribosylglycinamide formyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001250 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.3e-88
Identity = 179/231 (77.49%), Postives = 194/231 (83.98%), Query Frame = 0


Query: 2   VVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGGA 61
           VVSASLEGEVSK+VI+KKKLAVFVSGGGSNFRSIHEASLEG +HGEIVV+VTNKS CGGA
Sbjct: 150 VVSASLEGEVSKSVIQKKKLAVFVSGGGSNFRSIHEASLEGLVHGEIVVVVTNKSSCGGA 209

Query: 62  EYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAFS 121
           EYAR+ NIPV+LFPKTKDE  GLSA S+LVA TLR F IDFILLAGYLKLIP ELIQA+S
Sbjct: 210 EYARSKNIPVLLFPKTKDEPHGLSA-SELVA-TLRHFGIDFILLAGYLKLIPLELIQAYS 269

Query: 122 KSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLS--------------------VVPV 181
           K I+NIHPSLLPAFGGKGYYGMKVHK V+ SGAR S                    VVPV
Sbjct: 270 KCILNIHPSLLPAFGGKGYYGMKVHKAVVNSGARFSGATIHLVDEHFDTGRILAQRVVPV 329

Query: 182 LANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
           LAND+AEDLA RVLKEEHRLY EVVAALCDERI+WR+DGVPLI+ KENP+E
Sbjct: 330 LANDSAEDLAARVLKEEHRLYAEVVAALCDERIIWRSDGVPLIQSKENPNE 378

[Close]

BLAST of Lcy04g008400 vs. NCBI nr
Match: XP_038896301.1 (phosphoribosylglycinamide formyltransferase, chloroplastic [Benincasa hispida])

HSP 1 Score: 347.1 bits (889), Expect = 1.1e-91
Identity = 185/233 (79.40%), Postives = 200/233 (85.84%), Query Frame = 0


Query: 1   MVVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGG 60
           M+V+ASLEGEVS+TVIRKKKLAVFVSGGGSNFRSI+EASLEGSIHGEIVV+VTNKS CGG
Sbjct: 64  MIVNASLEGEVSRTVIRKKKLAVFVSGGGSNFRSINEASLEGSIHGEIVVVVTNKSGCGG 123

Query: 61  AEYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAF 120
           AEYAR+ +IPVILFPKTKDE  GLSA SDLVA TL SFEIDF+LLAGYLKLIP ELIQA+
Sbjct: 124 AEYARSKSIPVILFPKTKDEPHGLSA-SDLVA-TLGSFEIDFVLLAGYLKLIPPELIQAY 183

Query: 121 SKSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLS--------------------VVP 180
           SKSI+NIHPSLLPAFGGKGYYGMKVHK VI SGAR S                    VVP
Sbjct: 184 SKSIVNIHPSLLPAFGGKGYYGMKVHKAVIDSGARFSGATIHLVDEHFDTGRILAQRVVP 243

Query: 181 VLANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDEL 214
           VLAND+AEDLA R+LKEEHRLYVEVVAALCDERI+WRADGVPLI+ KENP+EL
Sbjct: 244 VLANDSAEDLAARILKEEHRLYVEVVAALCDERIIWRADGVPLIQSKENPNEL 294

[Close]

BLAST of Lcy04g008400 vs. NCBI nr
Match: XP_022954337.1 (phosphoribosylglycinamide formyltransferase, chloroplastic [Cucurbita moschata])

HSP 1 Score: 343.6 bits (880), Expect = 1.2e-90
Identity = 186/232 (80.17%), Postives = 196/232 (84.48%), Query Frame = 0


Query: 1   MVVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGG 60
           +V SASLEG+VS+TVIRKKKLAVFVSGGGSNFRSIHEAS+EGSIHGEI V+VTNKS CGG
Sbjct: 64  IVASASLEGDVSRTVIRKKKLAVFVSGGGSNFRSIHEASVEGSIHGEIGVVVTNKSSCGG 123

Query: 61  AEYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAF 120
           AEYAR+ NIPVILFPKTKDE  GLSA SDLVA TLRSFEIDFILLAGYLKLIP ELIQA+
Sbjct: 124 AEYARSKNIPVILFPKTKDEPHGLSA-SDLVA-TLRSFEIDFILLAGYLKLIPLELIQAY 183

Query: 121 SKSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLS--------------------VVP 180
           SKSIINIHPSLLPAFGGKGYYGMKVHK VIASGAR S                    VVP
Sbjct: 184 SKSIINIHPSLLPAFGGKGYYGMKVHKAVIASGARFSGPTIHLVDENFDTGKILAQRVVP 243

Query: 181 VLANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
           VLANDAAEDLA RVLKEEHRLYVEVVAALCD+RIVWR DGVPLI+ K+ P E
Sbjct: 244 VLANDAAEDLAARVLKEEHRLYVEVVAALCDDRIVWREDGVPLIQSKDKPGE 293

[Close]

BLAST of Lcy04g008400 vs. NCBI nr
Match: XP_023547957.1 (phosphoribosylglycinamide formyltransferase, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 343.2 bits (879), Expect = 1.6e-90
Identity = 186/232 (80.17%), Postives = 196/232 (84.48%), Query Frame = 0


Query: 1   MVVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGG 60
           +V SASLEG+VS+TVIRKKKLAVFVSGGGSNFRSIHEAS+EGSIHGEI V+VTNKS CGG
Sbjct: 64  IVASASLEGDVSRTVIRKKKLAVFVSGGGSNFRSIHEASVEGSIHGEIGVVVTNKSGCGG 123

Query: 61  AEYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAF 120
           AEYAR+ NIPVILFPKTKDE  GLSA SDLVA TLRSFEIDFILLAGYLKLIP ELIQA+
Sbjct: 124 AEYARSKNIPVILFPKTKDEPHGLSA-SDLVA-TLRSFEIDFILLAGYLKLIPLELIQAY 183

Query: 121 SKSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLS--------------------VVP 180
           SKSIINIHPSLLPAFGGKGYYGMKVHK VIASGAR S                    VVP
Sbjct: 184 SKSIINIHPSLLPAFGGKGYYGMKVHKAVIASGARFSGPTIHLVDEHFDTGKILAQRVVP 243

Query: 181 VLANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
           VLANDAAEDLA RVLKEEHRLYVEVVAALCD+RIVWR DGVPLI+ K+ P E
Sbjct: 244 VLANDAAEDLAARVLKEEHRLYVEVVAALCDDRIVWREDGVPLIQSKDKPGE 293

[Close]

BLAST of Lcy04g008400 vs. NCBI nr
Match: XP_022992348.1 (phosphoribosylglycinamide formyltransferase, chloroplastic [Cucurbita maxima])

HSP 1 Score: 341.7 bits (875), Expect = 4.7e-90
Identity = 184/232 (79.31%), Postives = 196/232 (84.48%), Query Frame = 0


Query: 1   MVVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGG 60
           +V S+SLEG+VS+ VIRKKKLAVFVSGGGSNFRSIHEAS+EGSIHGEI V+VTNKS CGG
Sbjct: 64  VVASSSLEGDVSRIVIRKKKLAVFVSGGGSNFRSIHEASVEGSIHGEIGVVVTNKSGCGG 123

Query: 61  AEYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAF 120
           AEYAR+ NIPVILFPKTKDE  GLSA SDLVA TLRSFEIDFILLAGYLKLIP ELIQA+
Sbjct: 124 AEYARSKNIPVILFPKTKDEPHGLSA-SDLVA-TLRSFEIDFILLAGYLKLIPLELIQAY 183

Query: 121 SKSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLS--------------------VVP 180
           SKSIINIHPSLLP+FGGKGYYGMKVHK VIASGAR S                    VVP
Sbjct: 184 SKSIINIHPSLLPSFGGKGYYGMKVHKAVIASGARFSGPTIHLVDEHFDTGKILAQRVVP 243

Query: 181 VLANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
           VLANDAAEDLA RVLKEEH LYVEVVAALCD+RIVWR DGVPLI+ K+NPDE
Sbjct: 244 VLANDAAEDLAARVLKEEHHLYVEVVAALCDDRIVWREDGVPLIQSKDNPDE 293

[Close]

BLAST of Lcy04g008400 vs. NCBI nr
Match: XP_004141701.1 (phosphoribosylglycinamide formyltransferase, chloroplastic [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 1.4e-89
Identity = 180/232 (77.59%), Postives = 198/232 (85.34%), Query Frame = 0


Query: 1   MVVSASLEGEVSKTVIRKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGG 60
           MVVSASL+GEVSKTVI+KKKLAVFVSGGGSNFRSIHEASLEGS+HGEIVV+VTNKS CGG
Sbjct: 62  MVVSASLKGEVSKTVIQKKKLAVFVSGGGSNFRSIHEASLEGSVHGEIVVVVTNKSGCGG 121

Query: 61  AEYARTNNIPVILFPKTKDEHDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAF 120
           AEYAR+ NIPV+LFPKTKDE +GLSA S+LVA TL+ FEIDFILLAGYLKLIP ELIQA+
Sbjct: 122 AEYARSKNIPVVLFPKTKDEPNGLSA-SELVA-TLKHFEIDFILLAGYLKLIPLELIQAY 181

Query: 121 SKSIINIHPSLLPAFGGKGYYGMKVHKTVIASGARLS--------------------VVP 180
           SKSI+NIHPSLLPAFGGKGYYGMKVHK V+ SGAR S                    VVP
Sbjct: 182 SKSIVNIHPSLLPAFGGKGYYGMKVHKAVVNSGARFSGATIHLVDEHFDTGRILAQRVVP 241

Query: 181 VLANDAAEDLAGRVLKEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
           VLAND+AEDLA RVLKEEH LY EVVAALCDERI+WR+DGVPLI+ KE+P+E
Sbjct: 242 VLANDSAEDLAARVLKEEHGLYAEVVAALCDERIIWRSDGVPLIQSKEHPNE 291

[Close]

BLAST of Lcy04g008400 vs. TAIR 10
Match: AT1G31220.1 (Formyl transferase )

HSP 1 Score: 264.2 bits (674), Expect = 8.9e-71
Identity = 135/217 (62.21%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 17  RKKKLAVFVSGGGSNFRSIHEASLEGSIHGEIVVLVTNKSDCGGAEYARTNNIPVILFPK 76
           R+KKLAVFVSGGGSNFR IHE   +GS++G++V+LVTNK DCGGAEYAR+N IPV++FPK
Sbjct: 76  RRKKLAVFVSGGGSNFRKIHEGCSDGSVNGDVVLLVTNKKDCGGAEYARSNGIPVLVFPK 135

Query: 77  TKDE-HDGLSASSDLVATTLRSFEIDFILLAGYLKLIPSELIQAFSKSIINIHPSLLPAF 136
            K E  DGLS S   +   LR + +DF+LLAGYLKLIP EL+QAF K I+NIHP+LLPAF
Sbjct: 136 AKREPSDGLSPSE--LVDVLRKYGVDFVLLAGYLKLIPVELVQAFPKRILNIHPALLPAF 195

Query: 137 GGKGYYGMKVHKTVIASGARL--------------------SVVPVLANDAAEDLAGRVL 196
           GGKG YG+KVHK V+ SGAR                     S V V+AND  E+LA RVL
Sbjct: 196 GGKGLYGIKVHKAVLESGARYSGPTIHFVNEEYDTGRILAQSAVRVIANDTPEELAKRVL 255

Query: 197 KEEHRLYVEVVAALCDERIVWRADGVPLIRGKENPDE 213
            EEH+LYVEVV A+C+ERI WR DGVPLI+ K+NPDE
Sbjct: 256 HEEHKLYVEVVGAICEERIKWREDGVPLIQNKQNPDE 290

[Close]

BLAST of Lcy04g008400 vs. TAIR 10
Match: AT4G17360.1 (Formyl transferase )

HSP 1 Score: 42.0 bits (97), Expect = 7.2e-04
Identity = 16/38 (42.11%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 101 DFILLAGYLKLIPSELIQAFSKSIINIHPSLLPAFGGK 139
           DF++LA Y++L+    ++ + K +INIH  LLP+F G+
Sbjct: 209 DFLVLARYMQLLSGNFLKGYGKDVINIHHGLLPSFKGR 246

The following BLAST results are available for this feature:

BLAST of Lcy04g008400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52423	2.7e-80	69.51	Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Vigna unguiculata ...	[more]
P52422	1.3e-69	62.21	Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Arabidopsis thalia...	[more]
Q42805	3.4e-59	57.47	Phosphoribosylglycinamide formyltransferase, chloroplastic OS=Glycine max OX=384...	[more]
P43846	2.0e-19	30.92	Phosphoribosylglycinamide formyltransferase OS=Haemophilus influenzae (strain AT...	[more]
P12040	1.9e-17	34.76	Phosphoribosylglycinamide formyltransferase OS=Bacillus subtilis (strain 168) OX...	[more]

BLAST of Lcy04g008400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQR1	6.0e-91	80.17	phosphoribosylglycinamide formyltransferase, chloroplastic OS=Cucurbita moschata...	[more]
A0A6J1JYY4	2.3e-90	79.31	phosphoribosylglycinamide formyltransferase, chloroplastic OS=Cucurbita maxima O...	[more]
A0A0A0K7R9	6.6e-90	77.59	Formyl_trans_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G450...	[more]
A0A1S3CGP8	1.5e-89	77.92	phosphoribosylglycinamide formyltransferase, chloroplastic OS=Cucumis melo OX=36...	[more]
A0A5D3BY35	1.3e-88	77.49	Phosphoribosylglycinamide formyltransferase OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Lcy04g008400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896301.1	1.1e-91	79.40	phosphoribosylglycinamide formyltransferase, chloroplastic [Benincasa hispida]	[more]
XP_022954337.1	1.2e-90	80.17	phosphoribosylglycinamide formyltransferase, chloroplastic [Cucurbita moschata]	[more]
XP_023547957.1	1.6e-90	80.17	phosphoribosylglycinamide formyltransferase, chloroplastic [Cucurbita pepo subsp...	[more]
XP_022992348.1	4.7e-90	79.31	phosphoribosylglycinamide formyltransferase, chloroplastic [Cucurbita maxima]	[more]
XP_004141701.1	1.4e-89	77.59	phosphoribosylglycinamide formyltransferase, chloroplastic [Cucumis sativus]	[more]

BLAST of Lcy04g008400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31220.1	8.9e-71	62.21	Formyl transferase	[more]
AT4G17360.1	7.2e-04	42.11	Formyl transferase	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.170		coord: 5..212 e-value: 5.9E-45 score: 155.1
None	No IPR available	PANTHER	PTHR43369	PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE	coord: 158..205 coord: 9..156
IPR002376	Formyl transferase, N-terminal	PFAM	PF00551	Formyl_trans_N	coord: 19..155 e-value: 3.6E-33 score: 114.8
IPR036477	Formyl transferase, N-terminal domain superfamily	SUPERFAMILY	53328	Formyltransferase	coord: 19..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g008400.1	Lcy04g008400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006189	'de novo' IMP biosynthetic process
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004644	phosphoribosylglycinamide formyltransferase activity
molecular_function	GO:0016742	hydroxymethyl-, formyl- and related transferase activity