Lcy04g007180 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g007180
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Replication factor C subunit 3
Location	Chr04: 37391984 .. 37397624 (+)
RNA-Seq Expression	Lcy04g007180
Synteny	Lcy04g007180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTGTCCCCTGCCTGCTGCTGAGCCCTTCTTCCCTTTTATGTTGAGTTCTGTTTCTTTTTCCCGCCATTCCAAGCCCCGCCTAAGCCCCTGCTTTCTCTTTCACACACAGTTCTTTCTCTTCGTGGACACCGTCTGATCTCGAAACGCCGACGAAGATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTGAAGAAATTGGTAACAAAAATCCGCTCATTTCTTTTGTTTGCTCTCTTTTCCTTGCATTCCTCAGTTCAGATTTCAATTCGGGGCGTTCGATATGGGTTTGCCCAAAATCTTCTCGTAGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGGAAGAAAACCCTAGTCATGGCCCTTATTAGACAGATGTTTGGAGCCAGTGCAGAGAAGGTATTAGCTTTTGATCGTTTTATATTTTTTGTTTGCTGGGAACATGTGTGATCGTTATCTTTGTTTTCTCTGTCTGTTTGTTGTGTTTGAACATCTCTCCCCTTTTGGCTGCAGGTGAAGGTGGAGAATAAAACGTGGAAAGTTGATGTAAGTTGCGGTTGTTTAGTGATTCCATCTCTTTCCACATGCATTAGAAAGCAATTGAGTTCAGATTGTGGGGAGTGGGATTTTTAGTGATCTGTTGATATGATTGCTACTTGAGATGTTCAGTTTTTAACCTTATCAGAATGTTACAGAATATCTTAAAAATTTAACTAGCTGAAGCTGTTATTTGGTTGTTTGACTTTATATTCTCATCATCTCTCTCTCTATGCCCTTCCTTTTTCGCTTCTCTTTTCAGGCTGGAACTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCACGTGGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCGAAAAACAGACCAATTGATTCCAAAGGCAAAAGAGGACATAAAGGTGTTTTTCTTCCCCCCACCTCCCAACCACATTTATAAGTTGTTCATGCTTCAGAGATTATTGGTAGCTCGTTGCTAATGCTTAAAAATGCTAATGAGCTCACTACCAAGCAAACATTAAATATAAATAGTGTTGATGCTTGTTTGGTAGCTTGTTTTCCAGCATGCTTGAATGCTTTAGACTTTGTATCTGTATAAGATATTGAGATTTTTGGTGCTCGTATGTATCAGTTTTAGTTCTAAATGACGTTGACAAACTATCAAGAGAAGCCCAACACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGTTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCGACAGAGGAGCAGGTCAGGAGAGAAAATGGTTTTTTTGTAATGTTTTATTTCTTTTTTGTTCTGAGTATGAATTTGAGTAAACTAAATGATGGACCAGAAGAATTTAATCATAAATTGTTTTGTTGCTATGTTTCCTATCAAAAAAAAAAAAAAAAAAATGTTTTGTTGCTTACCAATGTGATAAATTTGACATGTATTCAACTTGTTCTTTCAACTAAGAACTTAGGAGTCAACCATCGAAACTGACTGATGTTATATTAAATATGGAAGCATGAAAATCCTGTCGGTTGCCTGATCTAAATATTCTTGAATACGTTATTTTGATTTCGAATTGGAAAGCTTTCTTGTAATTCACCCTTTGGTGTTTGGAGTTTTTCTCCTCATTTCATTCATCAATGAAATTCGTTTCTCTTCTCAAAAAAAAAAGAATACGTTATTTTGGTAGTCTACCCCCCATAGAACAGTGCCTAGGATGGGCAATTTAAATGTCAGTTTATGACCAGGAAATACCCTTTATCTCGTATGGCTTACCAATACTGCTGTCAAAAACTTAACAGTTCACTGCAATTTTCATTTTTGCTTTCTTTTTAAACAATTTAAAGTCTTTTGCAGTTCAATGAAAAGTTTCGTTTCTTGTTACAAAAAAAAATCAAAGCCTTTTCCAGTGATGCTATATTCAATAGCTCCCATCTTTAATTGTCATGTAATATTTTCTACTGTATTGAAAAATTTTAGACTAGACGAAGGAAAAAAATATGCTAATGGATTAAGACTTCTGATTTGCAAGTTGTGGATGGTGTAAAGCCTATTTCCTATTTCACGGCATGGTTTTACTTTTACCTGAAACCTTGATCTTCAAAAATTTAAACCTGTTGATTGTAGTTATTTGGATTTAATAGCTGTTAAAGAGGTTACGTCCTTTTACCAGATTGTCAAGGTACTTGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACCGTAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGCCGTGTTCAACAGTTAATCTCCTCTAGGCTTCTTGCAAATCTAAGCTTTTCCCTCACTACTTGTCATCAAACTACCTTGGAAACCAATCTTTAAGGGTTGAAACTGAGCTGTTTGTTTATTATTATTATTTTTTGGATTAGGTATCCTTTTGTTAATAATCAGGCAATACCACCAATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGTCCCAAGAGGTATATCTCTTATGTACCTTTTTCTGTTGTATTTTATACTATAACAAATGTCTCGGTATCATATACGTGTGGCTTCTCTTCATATACATTAGTTGGGTACTTTGACACACCATTTGTCATCCAAATGATAACAATGAAACTGTTTTTGATTCTTAAAATCTGCTGTCCAACATCGCATGATATCACATGTCACGATATCTATTCTTCAAGAACAAGCAATTACATAAAGATAAACAATCCTTAAACTTCCATTGAGAGTATCCTTGATTATGATGATGATCTCTCTGGTTGGATGAAGGTGGTAGAGTTTCCTGTTCATCATTAGAACTTAGAAGTACCCATCTGATACTTGACTTTTTTTGGTCGAGAATTTAATGAATGAAGATTTCTATTCCTTGTTCAGCATGTAAGACCTTTATTTTTGTTGAGCAGAGAGAACTGTAGAAAGAGATATATGGAGGTTGGAGAGAGAACTATAGAAGCATATATGGAAAGAACTAATAAATGTATTATGTTATTAACTATTTGGAGAATTGTAAGAAGTCTGAAATAAAATTGCTCTTTTTTGTGGTATAGCCTGTTCCAGGTTCGTGGGAAGTTATATGAGCTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGGTAATCATTCTTTCCCAATTTCTATTGGTTTTTTCTGTTTTAATGAGAGATTCATGTTATCTACTTACTCAGAGGCTGCTTTATGAGCTACTTAAGAAACTGGATGCTGAATTAAAGCATGTGGTCTGTCATTGGGCCGCATATTATGTAAGTTCAACTTTTCACCTGTCTATGCGTTTACATTCCTTTTTTTTATTATTCAATTTATGTTAAATCTGTGCTTTTTGACTGCATTCACTCATGTCTACATATTACATCAGAACTTATGCTGGGAAGTGGAATATCAATCTCATTCAATAATTTGTCCTCTCTATCTAACATCAAGTTCTCCAAGTTTTCCTTATTTTGCAATTTCTCAAACTTTTTCTTCAAAAGGAACTAGAGGATTACATCCTAGACTTAGGGGAAGAGACAACAACATGATAGATTGAGTGTGTATGGAAGTATATTTGAAAGTAGTATTTTTAAATTAAATATTTTTCTCTACTTCTGCGAGAAACACCAAGCAAGTGTTTCCTCCAAAGTACTTTAAGAACTTGTGTGTTAAACTTGGTGAATATTGATGGATGGATAGATTCTGAGAAATGATGAAACAAAGTTCTTTATGAGATCTATGGTGGATATAGAGAAAAGCAACGAAGAGAAGTATTTGAAGTGCTGTTTGTCTGTATAATTTCAACCATGTTTTTTTATTGTAGGGATAGAATTGACAACCTCAAGCGTGACCAGAATTATAATGGTTGTCTAACATACCAGCCCTATAGTTCTACAAGTCCAGAAGTTTTTTCTTTTCAGAACTCTATCTTATTTGTCTAAAATGCATTGAATATGCTGAAAAAGTGAAACTGATTATACTCCACTTCAAACTGCATTGAATATCGTCTAGTGACCAATTCGAGAGGGTCAACCTTCTCTCCCGAACTATTACAAACTGACATAAATACATAGCTGACCTAAGGAGTTACAACTCCCTATTCAAGCTGATAAATAGCTATCCAAAAATCAGTCCTCCTGATCATCATTTGGGACTAAATTTCCCCTTTACCCTTCTTGGAATAAAGCTTTGTGATTGGAGGTCTCACATATACATGCATTGACTGGCCAAATATGATGTGACCTATGGAAACATCGCTGCAGAGACTTTCACCTTTGTTCAGTTTCGTTTCTTATTGTTGGTTAAATCTTTTCCCAGGAACATAGGATGCGCCTTGGACAGAAAGCCATCTTTCATATTGAAGGTAAATCTACAAATAGCACGAAGTAACCTTTTTTTTTTTAATAATTTTTTTTATTATATATATATATATATATACATATATACACACACATATACATATAACAACAAATAGCACGAAGTGTCTTGACATGAAAATATAACATCTCTGTTCATCTTTTTTTCCTAGCCACGATATTTATTTCATCATATAAGAACCTTGAATCCATCAACTAAAAGATAATATCATACAATTTAATGGTTTGAGAGTGTTCTATCAAATGTCTGTAAATCTAGAAAACTGAAAAGATTTGTTTCATGCAACTTAAGAGTAATGAGTTTTGACAATTTGATGATACATGTTTTCATATCAAGAATTTGACTCTTCATGCCCTGACATTTGTGATAAGATTTCATGTTCTCAACTAGATAAGATATATACTTTCGATCAAGAGGTTAGAGGTTCAACTCTCCTATCCTATGTGTTGAACTCTCAAAAAATAAGATTTCCTGCACTCTATTCCTTTAGGTTCTAACCTTTTAATAGACTCATCTGGAAGAAGCCAAAACTCTCTCTCACTCTCTAAATTCTTTTTCTCTCTCACAGTTTTTAACTATTCTTTTGGTCTGATATTGCAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACGTTCGGCTAAAGAGAAGAAAAGTAGATAATGTTCATTCAAGAAAAGCAATTGTAAGTTGGTAGGTTTGGTCTGACGTTGAATTAAGTCAATCTGGTGTATTCATCTTCTCTTTGGTCAGTTTTGTATGGTACTGGTTGTTCATCCTCCTGTAGGTGTTTTTTCTATTAGGGAACTTGGAAGTTGAATTTTGAGGGATCTGAACTGAATCTAACCTGGCAGAAAAATGGAAAATTGTCCTGTCATTTTGCAGCACTTTCTACTGGAGTATTTTCTCTTTCTTATATAAAAATAACAATAATAGAGGAAGTTGTCATTATCCATATCTGATGATTGGTCCTTTTCTCCTTTTTCCTTCTGATATTTGCC

mRNA sequence

ATGTCCTTGTCCCCTGCCTGCTGCTGAGCCCTTCTTCCCTTTTATGTTGAGTTCTGTTTCTTTTTCCCGCCATTCCAAGCCCCGCCTAAGCCCCTGCTTTCTCTTTCACACACAGTTCTTTCTCTTCGTGGACACCGTCTGATCTCGAAACGCCGACGAAGATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTGAAGAAATTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGGAAGAAAACCCTAGTCATGGCCCTTATTAGACAGATGTTTGGAGCCAGTGCAGAGAAGGTGAAGGTGGAGAATAAAACGTGGAAAGTTGATGCTGGAACTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCACGTGGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCGAAAAACAGACCAATTGATTCCAAAGGCAAAAGAGGACATAAAGTTTTAGTTCTAAATGACGTTGACAAACTATCAAGAGAAGCCCAACACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGTTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCGACAGAGGAGCAGATTGTCAAGGTACTTGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACCGTAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGCCGTGTTCAACAGTATCCTTTTGTTAATAATCAGGCAATACCACCAATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGTCCCAAGAGCCTGTTCCAGGTTCGTGGGAAGTTATATGAGCTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTTAAGAAACTGGATGCTGAATTAAAGCATGTGGTCTGTCATTGGGCCGCATATTATGAACATAGGATGCGCCTTGGACAGAAAGCCATCTTTCATATTGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACGTTCGGCTAAAGAGAAGAAAAGTAGATAATGTTCATTCAAGAAAAGCAATTGTAAGTTGGTAGGTTTGGTCTGACGTTGAATTAAGTCAATCTGGTGTATTCATCTTCTCTTTGGTCAGTTTTGTATGGTACTGGTTGTTCATCCTCCTGTAGGTGTTTTTTCTATTAGGGAACTTGGAAGTTGAATTTTGAGGGATCTGAACTGAATCTAACCTGGCAGAAAAATGGAAAATTGTCCTGTCATTTTGCAGCACTTTCTACTGGAGTATTTTCTCTTTCTTATATAAAAATAACAATAATAGAGGAAGTTGTCATTATCCATATCTGATGATTGGTCCTTTTCTCCTTTTTCCTTCTGATATTTGCC

Coding sequence (CDS)

ATGTTGTGGGTCGACAAGTATCGTCCAAAAACCCTAGACCAGATCACAGTTCACCAAGACGTAGCACAGAATCTGAAGAAATTGGTTACCGAGCAGGACTGCCCTCATTTGCTCTTCTATGGCCCCTCCGGTTCCGGGAAGAAAACCCTAGTCATGGCCCTTATTAGACAGATGTTTGGAGCCAGTGCAGAGAAGGTGAAGGTGGAGAATAAAACGTGGAAAGTTGATGCTGGAACTAGAACTATTGATATAGAGTTGACCACCTTATCAAGTACAAACCACGTGGAGCTCACTCCCAGCGATGCAGGTTTCCAAGATAGGTATATTGTTCAAGAGATAATCAAAGAAATGGCGAAAAACAGACCAATTGATTCCAAAGGCAAAAGAGGACATAAAGTTTTAGTTCTAAATGACGTTGACAAACTATCAAGAGAAGCCCAACACTCTCTTAGGAGAACAATGGAGAAATATAGCTCGTACTGTAGGTTAATACTTTGTTGCAATAGTTCATCAAGAGTTACTGAAGCAATCCGTTCTCGCTGCCTAAATGTGCGGATAAATGGACCGACAGAGGAGCAGATTGTCAAGGTACTTGAGTTCATTGGGAAGAAAGAAGGACTGCAACTTCCATCTGGATTTGCTTCCCGTATTGCAGAAAAATCAAACCGTAGTTTGAGGAGAGCTATACTATCATTTGAGACTTGCCGTGTTCAACAGTATCCTTTTGTTAATAATCAGGCAATACCACCAATGGATTGGGAGGAGTACATCTCTGAGATAGCGTCTGACATAATGAAGGAGCAGAGTCCCAAGAGCCTGTTCCAGGTTCGTGGGAAGTTATATGAGCTACTGGTTAATTGTATTCCACCAGAGATCATATTGAAGAGGCTGCTTTATGAGCTACTTAAGAAACTGGATGCTGAATTAAAGCATGTGGTCTGTCATTGGGCCGCATATTATGAACATAGGATGCGCCTTGGACAGAAAGCCATCTTTCATATTGAAGCTTTTGTGGCGAAGTTCATGAGCATATACAAGACTTTCCTCATTTCAACGTTCGGCTAA

Protein sequence

MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYPFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYELLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG

Homology

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BLAST of Lcy04g007180 vs. ExPASy Swiss-Prot
Match: Q8VXX4 (Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 624.0 bits (1608), Expect = 1.0e-177
Identity = 303/354 (85.59%), Postives = 336/354 (94.92%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPK+LD++ VH+D+AQ LKKLV+EQDCPHLLFYGPSGSGKKTL+MAL++Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           ASAEKVKVEN+ WKVDAG+RTID+ELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G+KVLVLN+VDKLSREAQHSLRRTMEKYSS CRLILCCNSSS+VTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRIN P++E+IVKVLEF+ KKE LQLP GFA+RIAEKSNRSLRRAILS ETCRVQ Y
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF  NQ I PMDWEEY++EIA+D+MKEQSPK LFQVRGK+YELLVNCIPPE+ILKRLL+E
Sbjct: 241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLD+ELK  VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK FLISTFG
Sbjct: 301 LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 354

[Close]

BLAST of Lcy04g007180 vs. ExPASy Swiss-Prot
Match: Q852K3 (Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 PE=2 SV=1)

HSP 1 Score: 595.1 bits (1533), Expect = 5.1e-169
Identity = 286/354 (80.79%), Postives = 324/354 (91.53%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLD++TVH  VAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALI+QMFG
Sbjct: 1   MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           A A+KVK+ENKTWK+D G+R I+IEL  LSS +HVE+ PSDAGFQDRY+VQE+IKEMAKN
Sbjct: 61  AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGKR  KVLVLN+VDKLSREAQHSLRRTMEKYS+ CRLILCCNSSS+VTEA+RSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVR+N P+E+QIV+VLEFIGKKE LQLP GFA+RIA +SNR+LRRAIL FETC+VQQY
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF +NQ  PP+DWE+Y+SEIA+DIMKEQSPK LF VR K YELLVNCIPPE ILK+LL E
Sbjct: 241 PFTSNQVAPPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLD++LKH +CHWAA+YEH+MRLG KAIFH+EAFVAKFMSIYK FL+STFG
Sbjct: 301 LLKKLDSDLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVSTFG 354

[Close]

BLAST of Lcy04g007180 vs. ExPASy Swiss-Prot
Match: P40938 (Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2)

HSP 1 Score: 380.9 bits (977), Expect = 1.5e-104
Identity = 186/348 (53.45%), Postives = 259/348 (74.43%), Query Frame = 0


Query: 2   LWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGA 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  SAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
             EK+++E++T    +  +   IE++T++S  H+E+ PSDAG  DR ++QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 122

Query: 122 PIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRC 181
            +++  +R  KV++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSRC
Sbjct: 123 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 182

Query: 182 LNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYP 241
           L VR+  P+ E I  VL  + KKEGL LPS  A R+AEKS R+LR+A+L  E CRVQQYP
Sbjct: 183 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYP 242

Query: 242 FVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYEL 301
           F  +Q IP  DWE Y+ E A+ I+ +Q+P+ L +VRG+LYELL +CIPPEII+K LL EL
Sbjct: 243 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 302

Query: 302 LKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFL 350
           L   D +LK  V   AAYYEHR++LG KAI+H+EAFVAKFM++YK F+
Sbjct: 303 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

[Close]

BLAST of Lcy04g007180 vs. ExPASy Swiss-Prot
Match: Q8R323 (Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 1.5e-104
Identity = 185/348 (53.16%), Postives = 259/348 (74.43%), Query Frame = 0


Query: 2   LWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGA 61
           LWVDKYRP +L ++  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query: 62  SAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
             EK+++E++T    +  +   IE++T++S  H+E+ PSDAG  DR ++QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 122

Query: 122 PIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRC 181
            +++  +R  KV++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSRC
Sbjct: 123 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 182

Query: 182 LNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYP 241
           L VR+  P+ E I  VL  + +KEGL LPS  A R+AEKS R+LR+A+L  E CRVQQYP
Sbjct: 183 LAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYP 242

Query: 242 FVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYEL 301
           F  +Q IP  DWE Y+ E A+ I+ +Q+P+ L +VRG+LYELL +CIPPEII+K LL EL
Sbjct: 243 FTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 302

Query: 302 LKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFL 350
           L   D +LK  V   AAYYEHR++LG KAI+H+EAFVAKFM++YK F+
Sbjct: 303 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

[Close]

BLAST of Lcy04g007180 vs. ExPASy Swiss-Prot
Match: Q2TBV1 (Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 4.4e-104
Identity = 185/348 (53.16%), Postives = 258/348 (74.14%), Query Frame = 0


Query: 2   LWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGA 61
           LWVDKYRP +L Q+  H++ A  L+ LV   D PHLL YGPSG+GKKT +M ++R+++G 
Sbjct: 3   LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 62  SAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
             EK+++E++T    +  +   IE++T++S  H+E+ PSDAG  DR ++QE++K +A+++
Sbjct: 63  GVEKLRIEHQTITTPSKKK---IEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 122

Query: 122 PIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRC 181
            +++  ++  KV++L +VDKL+++AQH+LRRTMEKY S CRLILCCNS+S+V   IRSRC
Sbjct: 123 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 182

Query: 182 LNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQYP 241
           L VR+  P+ E I  VL  + KKEGL LP   A R+AEKS R+LR+A+L  E CRVQQYP
Sbjct: 183 LAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYP 242

Query: 242 FVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYEL 301
           F  +Q IP  DWE Y+ E A+ I+ +Q+P+ L +VRG+LYELL +CIPPEII+K LL EL
Sbjct: 243 FTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSEL 302

Query: 302 LKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFL 350
           L   D +LK  V   AAYYEHR++LG KAI+H+EAFVAKFM++YK F+
Sbjct: 303 LHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347

[Close]

BLAST of Lcy04g007180 vs. ExPASy TrEMBL
Match: A0A1S3B4A5 (replication factor C subunit 3 OS=Cucumis melo OX=3656 GN=LOC103486020 PE=4 SV=1)

HSP 1 Score: 687.2 bits (1772), Expect = 3.7e-194
Identity = 346/354 (97.74%), Postives = 348/354 (98.31%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SAEKVKVENKTWKVDAGTRTIDIELTTLSS NHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFV NQAIPPMDWEEYI+EIASDIMKEQSPK LFQVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKH VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Lcy04g007180 vs. ExPASy TrEMBL
Match: A0A5D3C0B6 (Replication factor C subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00180 PE=4 SV=1)

HSP 1 Score: 687.2 bits (1772), Expect = 3.7e-194
Identity = 346/354 (97.74%), Postives = 348/354 (98.31%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SAEKVKVENKTWKVDAGTRTIDIELTTLSS NHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFV NQAIPPMDWEEYI+EIASDIMKEQSPK LFQVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKH VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Lcy04g007180 vs. ExPASy TrEMBL
Match: A0A6J1DMG0 (replication factor C subunit 3 OS=Momordica charantia OX=3673 GN=LOC111021793 PE=4 SV=1)

HSP 1 Score: 683.7 bits (1763), Expect = 4.0e-193
Identity = 343/354 (96.89%), Postives = 347/354 (98.02%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ+TVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQVTVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQ+IIKEMAKN
Sbjct: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQDIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPTEEQIVKVLE IGKKEGLQLP GFASRIAEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIVKVLELIGKKEGLQLPPGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF +NQAIPPMDWEEYISEIASDIMKEQSPK LFQVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFASNQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAEL+H VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK FLIS FG
Sbjct: 301 LLKKLDAELQHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISAFG 354

[Close]

BLAST of Lcy04g007180 vs. ExPASy TrEMBL
Match: A0A0A0KYY3 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G579870 PE=4 SV=1)

HSP 1 Score: 683.7 bits (1763), Expect = 4.0e-193
Identity = 343/354 (96.89%), Postives = 348/354 (98.31%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SA+KVKVENKTWKVDAGTRTIDIELTTLSS NHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPTEEQI KVLE+IGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFV+NQAIPPMDWEEYI+EIAS+IMKEQSPK LFQVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKH VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Lcy04g007180 vs. ExPASy TrEMBL
Match: A0A6J1GG01 (replication factor C subunit 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453820 PE=4 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 6.9e-193
Identity = 340/354 (96.05%), Postives = 351/354 (99.15%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLF+GPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           ASAEKVKVENKTWKVDAGTR ++IELTT+SSTNHVELTPSDAGFQDRYIVQEIIK+MAKN
Sbjct: 61  ASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPT++QIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFV+NQAIPPMDWEEYISEIASDIMKEQSPK L+QVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKH VCHWAAYYEHRMRLGQK+IFHIEAFVAKFMSIYK+FLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEAFVAKFMSIYKSFLISTFG 354

[Close]

BLAST of Lcy04g007180 vs. NCBI nr
Match: XP_008442036.1 (PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442037.1 PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442038.1 PREDICTED: replication factor C subunit 3 [Cucumis melo] >KAA0041829.1 replication factor C subunit 3 [Cucumis melo var. makuwa] >TYK05351.1 replication factor C subunit 3 [Cucumis melo var. makuwa])

HSP 1 Score: 687.2 bits (1772), Expect = 7.6e-194
Identity = 346/354 (97.74%), Postives = 348/354 (98.31%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SAEKVKVENKTWKVDAGTRTIDIELTTLSS NHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSAEKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKS+RSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSSRSLRRAILSFETCRVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFV NQAIPPMDWEEYI+EIASDIMKEQSPK LFQVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVGNQAIPPMDWEEYITEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKH VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Lcy04g007180 vs. NCBI nr
Match: XP_022154548.1 (replication factor C subunit 3 [Momordica charantia] >XP_022154549.1 replication factor C subunit 3 [Momordica charantia])

HSP 1 Score: 683.7 bits (1763), Expect = 8.4e-193
Identity = 343/354 (96.89%), Postives = 347/354 (98.02%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQ+TVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQVTVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQ+IIKEMAKN
Sbjct: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQDIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPTEEQIVKVLE IGKKEGLQLP GFASRIAEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIVKVLELIGKKEGLQLPPGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF +NQAIPPMDWEEYISEIASDIMKEQSPK LFQVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFASNQAIPPMDWEEYISEIASDIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAEL+H VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK FLIS FG
Sbjct: 301 LLKKLDAELQHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISAFG 354

[Close]

BLAST of Lcy04g007180 vs. NCBI nr
Match: XP_004144654.1 (replication factor C subunit 3 [Cucumis sativus] >KGN54900.1 hypothetical protein Csa_012378 [Cucumis sativus])

HSP 1 Score: 683.7 bits (1763), Expect = 8.4e-193
Identity = 343/354 (96.89%), Postives = 348/354 (98.31%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLV EQDCPHLLFYGPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVNEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
            SA+KVKVENKTWKVDAGTRTIDIELTTLSS NHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  PSADKVKVENKTWKVDAGTRTIDIELTTLSSANHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPTEEQI KVLE+IGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTEEQIFKVLEYIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFV+NQAIPPMDWEEYI+EIAS+IMKEQSPK LFQVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVSNQAIPPMDWEEYITEIASEIMKEQSPKRLFQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKH VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 354

[Close]

BLAST of Lcy04g007180 vs. NCBI nr
Match: XP_022950838.1 (replication factor C subunit 3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 682.9 bits (1761), Expect = 1.4e-192
Identity = 340/354 (96.05%), Postives = 351/354 (99.15%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLF+GPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           ASAEKVKVENKTWKVDAGTR ++IELTT+SSTNHVELTPSDAGFQDRYIVQEIIK+MAKN
Sbjct: 61  ASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPT++QIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTDDQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFV+NQAIPPMDWEEYISEIASDIMKEQSPK L+QVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKH VCHWAAYYEHRMRLGQK+IFHIEAFVAKFMSIYK+FLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEAFVAKFMSIYKSFLISTFG 354

[Close]

BLAST of Lcy04g007180 vs. NCBI nr
Match: XP_022978217.1 (replication factor C subunit 3 [Cucurbita maxima])

HSP 1 Score: 680.6 bits (1755), Expect = 7.1e-192
Identity = 338/354 (95.48%), Postives = 351/354 (99.15%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPKTLDQITVH+DVAQNLKKLVTEQDCPHLLF+GPSGSGKKTLVMALIRQMFG
Sbjct: 1   MLWVDKYRPKTLDQITVHEDVAQNLKKLVTEQDCPHLLFFGPSGSGKKTLVMALIRQMFG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           ASAEKVKVENKTWKVDAGTR ++IELTT+SSTNHVELTPSDAGFQDRYIVQEIIK+MAKN
Sbjct: 61  ASAEKVKVENKTWKVDAGTRNVEIELTTISSTNHVELTPSDAGFQDRYIVQEIIKDMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR
Sbjct: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRINGPT+++IVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY
Sbjct: 181 CLNVRINGPTDDEIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PFV+NQAIPPMDWEEYISEIASDIMKEQSPK L+QVRGKLYELLVNCIPPEIILKRLLYE
Sbjct: 241 PFVSNQAIPPMDWEEYISEIASDIMKEQSPKRLYQVRGKLYELLVNCIPPEIILKRLLYE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLDAELKH VCHWAAYYEHRMRLGQK+IFHIEAFVAKFMSIYK+FLISTFG
Sbjct: 301 LLKKLDAELKHEVCHWAAYYEHRMRLGQKSIFHIEAFVAKFMSIYKSFLISTFG 354

[Close]

BLAST of Lcy04g007180 vs. TAIR 10
Match: AT5G27740.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 624.0 bits (1608), Expect = 7.3e-179
Identity = 303/354 (85.59%), Postives = 336/354 (94.92%), Query Frame = 0


Query: 1   MLWVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFG 60
           MLWVDKYRPK+LD++ VH+D+AQ LKKLV+EQDCPHLLFYGPSGSGKKTL+MAL++Q++G
Sbjct: 1   MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 61  ASAEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120
           ASAEKVKVEN+ WKVDAG+RTID+ELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN
Sbjct: 61  ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 121 RPIDSKGKRGHKVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSR 180
           RPID+KGK+G+KVLVLN+VDKLSREAQHSLRRTMEKYSS CRLILCCNSSS+VTEAI+SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 181 CLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAILSFETCRVQQY 240
           CLNVRIN P++E+IVKVLEF+ KKE LQLP GFA+RIAEKSNRSLRRAILS ETCRVQ Y
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNY 240

Query: 241 PFVNNQAIPPMDWEEYISEIASDIMKEQSPKSLFQVRGKLYELLVNCIPPEIILKRLLYE 300
           PF  NQ I PMDWEEY++EIA+D+MKEQSPK LFQVRGK+YELLVNCIPPE+ILKRLL+E
Sbjct: 241 PFTGNQVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHE 300

Query: 301 LLKKLDAELKHVVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKTFLISTFG 355
           LLKKLD+ELK  VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYK FLISTFG
Sbjct: 301 LLKKLDSELKLEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLISTFG 354

[Close]

BLAST of Lcy04g007180 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-26
Identity = 76/234 (32.48%), Postives = 114/234 (48.72%), Query Frame = 0


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGAS 62
           WV+KYRPK +  +   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDR--YIVQEIIKEMAKN 122
             K +V                          +EL  SD    DR   +V+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 130

Query: 123 RPIDSKGKRGH-----KVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTE 182
               +  + G+     K+++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 131 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 190

Query: 183 AIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAI 230
            + SRC   R    +EE +   +  I  +EGL L     S ++  S   LRRAI
Sbjct: 191 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 214

[Close]

BLAST of Lcy04g007180 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-26
Identity = 76/234 (32.48%), Postives = 114/234 (48.72%), Query Frame = 0


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGAS 62
           WV+KYRPK +  +   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDR--YIVQEIIKEMAKN 122
             K +V                          +EL  SD    DR   +V+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 130

Query: 123 RPIDSKGKRGH-----KVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTE 182
               +  + G+     K+++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 131 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 190

Query: 183 AIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAI 230
            + SRC   R    +EE +   +  I  +EGL L     S ++  S   LRRAI
Sbjct: 191 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 214

[Close]

BLAST of Lcy04g007180 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 113.2 bits (282), Expect = 4.2e-25
Identity = 74/234 (31.62%), Postives = 111/234 (47.44%), Query Frame = 0


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGAS 62
           WV+KYRPK +  +   ++V + L   +   DCPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGV- 70

Query: 63  AEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDR--YIVQEIIKEMAKN 122
                                           +EL  SD    DR   +V+  IK+ A  
Sbjct: 71  --------------------------------LELNASD----DRGINVVRTKIKDFAAV 130

Query: 123 RPIDSKGKRGH-----KVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTE 182
               +  + G+     K+++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 131 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 190

Query: 183 AIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAI 230
            + SRC   R    +EE +   +  I  +EGL L     S ++  S   LRRAI
Sbjct: 191 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 207

[Close]

BLAST of Lcy04g007180 vs. TAIR 10
Match: AT1G21690.2 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 107.1 bits (266), Expect = 3.0e-23
Identity = 77/234 (32.91%), Postives = 112/234 (47.86%), Query Frame = 0


Query: 3   WVDKYRPKTLDQITVHQDVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLVMALIRQMFGAS 62
           WV+KYRPK +      +DVA        E+ CPH+LFYGP G+GK T  +A+  Q+FG  
Sbjct: 11  WVEKYRPKQV------KDVAHQ------EEVCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70

Query: 63  AEKVKVENKTWKVDAGTRTIDIELTTLSSTNHVELTPSDAGFQDR--YIVQEIIKEMAKN 122
             K +V                          +EL  SD    DR   +V+  IK+ A  
Sbjct: 71  LYKSRV--------------------------LELNASD----DRGINVVRTKIKDFAAV 130

Query: 123 RPIDSKGKRGH-----KVLVLNDVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTE 182
               +  + G+     K+++L++ D ++ +AQ++LRRTME YS   R    CN  SR+ E
Sbjct: 131 AVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 190

Query: 183 AIRSRCLNVRINGPTEEQIVKVLEFIGKKEGLQLPSGFASRIAEKSNRSLRRAI 230
            + SRC   R    +EE +   +  I  +EGL L     S ++  S   LRRAI
Sbjct: 191 PLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALSTLSSISQGDLRRAI 202

The following BLAST results are available for this feature:

BLAST of Lcy04g007180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VXX4	1.0e-177	85.59	Replication factor C subunit 3 OS=Arabidopsis thaliana OX=3702 GN=RFC3 PE=2 SV=1	[more]
Q852K3	5.1e-169	80.79	Replication factor C subunit 5 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC5 ...	[more]
P40938	1.5e-104	53.45	Replication factor C subunit 3 OS=Homo sapiens OX=9606 GN=RFC3 PE=1 SV=2	[more]
Q8R323	1.5e-104	53.16	Replication factor C subunit 3 OS=Mus musculus OX=10090 GN=Rfc3 PE=1 SV=1	[more]
Q2TBV1	4.4e-104	53.16	Replication factor C subunit 3 OS=Bos taurus OX=9913 GN=RFC3 PE=2 SV=1	[more]

BLAST of Lcy04g007180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4A5	3.7e-194	97.74	replication factor C subunit 3 OS=Cucumis melo OX=3656 GN=LOC103486020 PE=4 SV=1	[more]
A0A5D3C0B6	3.7e-194	97.74	Replication factor C subunit 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1DMG0	4.0e-193	96.89	replication factor C subunit 3 OS=Momordica charantia OX=3673 GN=LOC111021793 PE...	[more]
A0A0A0KYY3	4.0e-193	96.89	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G579870 PE=4 SV...	[more]
A0A6J1GG01	6.9e-193	96.05	replication factor C subunit 3 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Lcy04g007180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442036.1	7.6e-194	97.74	PREDICTED: replication factor C subunit 3 [Cucumis melo] >XP_008442037.1 PREDICT...	[more]
XP_022154548.1	8.4e-193	96.89	replication factor C subunit 3 [Momordica charantia] >XP_022154549.1 replication...	[more]
XP_004144654.1	8.4e-193	96.89	replication factor C subunit 3 [Cucumis sativus] >KGN54900.1 hypothetical protei...	[more]
XP_022950838.1	1.4e-192	96.05	replication factor C subunit 3 isoform X2 [Cucurbita moschata]	[more]
XP_022978217.1	7.1e-192	95.48	replication factor C subunit 3 [Cucurbita maxima]	[more]

BLAST of Lcy04g007180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27740.1	7.3e-179	85.59	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.1	2.2e-26	32.48	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	2.2e-26	32.48	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.4	4.2e-25	31.62	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.2	3.0e-23	32.91	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 33..192 e-value: 6.1E-6 score: 35.7
None	No IPR available	GENE3D	1.10.8.60		coord: 190..248 e-value: 6.2E-14 score: 53.3
None	No IPR available	PFAM	PF13177	DNA_pol3_delta2	coord: 19..187 e-value: 5.3E-14 score: 52.5
None	No IPR available	GENE3D	1.20.272.10		coord: 252..345 e-value: 3.9E-38 score: 131.6
None	No IPR available	PANTHER	PTHR11669:SF1	REPLICATION FACTOR C SUBUNIT 3	coord: 2..346
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 2..346
None	No IPR available	CDD	cd00009	AAA	coord: 19..181 e-value: 2.45092E-9 score: 53.6891
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..189 e-value: 1.7E-54 score: 186.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..240
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 251..346

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g007180.1	Lcy04g007180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity