Lcy04g006690 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g006690
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 36772829 .. 36773806 (-)
RNA-Seq ExpressionLcy04g006690
SyntenyLcy04g006690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATATCATAGAGATTAAAACTTTAAACTTTTGTTTGTTGAAATGAAGTTGCAGCTTCTTCTCTTCCTTGCTTTTCTCTCCATCTTTCTGCTCTCTCTAGAAGTTGATGGCAGAAAGTCTTTACTCCAAAAAGAATATGGGAAAGACTCTAAGCTTGTCAAGCAAGCTAATATTTTAGATGCAGATTTTCAAGGTGAAATGGTGGCTAATCATCAAATGAAGAAACCAACTGATTTAGAAGATCCTGGTGATGAAGAGGGTGGGAGTTCCGAAGACGACGAAGAAGGATCTAGGGATGGCGTTCCTGGAGATGACGAAGGAGAATCTGAAGATACTCCCAGTGAGGATGAAGGAGATTTTGGAGACAACGAAGGAGGAGATTCTGGAGAGGGTGTCCCTGGAGACGACGAAGGAGAATTTGGAGGCGATGATGGAGGTGGAGATGTTGTAGATGTTGATGATGGAGACAAAGGTGACGACGGTGACGAAAATAATGATGACAATAGTGATGGTGGAGAGCAAAATGATGCTGTTAATGTTAAGAAAGTTGGTAATTAAGAAAAAGATAGCTAGGTGATGATGGTTGAAGATGTGTTGAGAATAAAGAAGATAAAAGATGAAATTTGATAAGATAATGTATTAGTTAAGTTAATCAACAAAACTAGAAATATATGACATCCAAAACATATGCATGGAGATGTACTAGATGCTAATAAGATAAATGAATGGTTTTGCAATATAGATCAACTCAACTTTGCATATAGCAACGGTCTCATATTTGTTGCAATAACCAAATTGATGCAACGATGATGTGGAATTCAAAAAAAAAAATATTTGTTGCAATAACCTATACAATTTCAAGGTTTGATAACATTGAAAATTTGTAATAAAGCATGTCAAGAAGAGCATAGCTCAACTGGCATAAAGTTGTACTAGTGACCACGAGGTCTGTGGTTTAATTTCCCCACCCCACATATT

mRNA sequence

CAATATCATAGAGATTAAAACTTTAAACTTTTGTTTGTTGAAATGAAGTTGCAGCTTCTTCTCTTCCTTGCTTTTCTCTCCATCTTTCTGCTCTCTCTAGAAGTTGATGGCAGAAAGTCTTTACTCCAAAAAGAATATGGGAAAGACTCTAAGCTTGTCAAGCAAGCTAATATTTTAGATGCAGATTTTCAAGGTGAAATGGTGGCTAATCATCAAATGAAGAAACCAACTGATTTAGAAGATCCTGGTGATGAAGAGGGTGGGAGTTCCGAAGACGACGAAGAAGGATCTAGGGATGGCGTTCCTGGAGATGACGAAGGAGAATCTGAAGATACTCCCAGTGAGGATGAAGGAGATTTTGGAGACAACGAAGGAGGAGATTCTGGAGAGGGTGTCCCTGGAGACGACGAAGGAGAATTTGGAGGCGATGATGGAGGTGGAGATGTTGTAGATGTTGATGATGGAGACAAAGGTGACGACGGTGACGAAAATAATGATGACAATAGTGATGGTGGAGAGCAAAATGATGCTGTTAATGTTAAGAAAGTTGGTAATTAAGAAAAAGATAGCTAGGTGATGATGGTTGAAGATGTGTTGAGAATAAAGAAGATAAAAGATGAAATTTGATAAGATAATGTATTAGTTAAGTTAATCAACAAAACTAGAAATATATGACATCCAAAACATATGCATGGAGATGTACTAGATGCTAATAAGATAAATGAATGGTTTTGCAATATAGATCAACTCAACTTTGCATATAGCAACGGTCTCATATTTGTTGCAATAACCAAATTGATGCAACGATGATGTGGAATTCAAAAAAAAAAATATTTGTTGCAATAACCTATACAATTTCAAGGTTTGATAACATTGAAAATTTGTAATAAAGCATGTCAAGAAGAGCATAGCTCAACTGGCATAAAGTTGTACTAGTGACCACGAGGTCTGTGGTTTAATTTCCCCACCCCACATATT

Coding sequence (CDS)

ATGAAGTTGCAGCTTCTTCTCTTCCTTGCTTTTCTCTCCATCTTTCTGCTCTCTCTAGAAGTTGATGGCAGAAAGTCTTTACTCCAAAAAGAATATGGGAAAGACTCTAAGCTTGTCAAGCAAGCTAATATTTTAGATGCAGATTTTCAAGGTGAAATGGTGGCTAATCATCAAATGAAGAAACCAACTGATTTAGAAGATCCTGGTGATGAAGAGGGTGGGAGTTCCGAAGACGACGAAGAAGGATCTAGGGATGGCGTTCCTGGAGATGACGAAGGAGAATCTGAAGATACTCCCAGTGAGGATGAAGGAGATTTTGGAGACAACGAAGGAGGAGATTCTGGAGAGGGTGTCCCTGGAGACGACGAAGGAGAATTTGGAGGCGATGATGGAGGTGGAGATGTTGTAGATGTTGATGATGGAGACAAAGGTGACGACGGTGACGAAAATAATGATGACAATAGTGATGGTGGAGAGCAAAATGATGCTGTTAATGTTAAGAAAGTTGGTAATTAA

Protein sequence

MKLQLLLFLAFLSIFLLSLEVDGRKSLLQKEYGKDSKLVKQANILDADFQGEMVANHQMKKPTDLEDPGDEEGGSSEDDEEGSRDGVPGDDEGESEDTPSEDEGDFGDNEGGDSGEGVPGDDEGEFGGDDGGGDVVDVDDGDKGDDGDENNDDNSDGGEQNDAVNVKKVGN
Homology
BLAST of Lcy04g006690 vs. ExPASy TrEMBL
Match: A0A5D3CEH4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00230 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 88/179 (49.16%), Postives = 114/179 (63.69%), Query Frame = 0

Query: 2   KLQLLLFL---AFLSIFLLSLEVDGRKSLLQKEYGKDS-KLVKQANILDADFQGEMVANH 61
           KLQLLLF      +SI L+S +VDGRKSLLQKE   DS KLV+Q+  LDADF GEMV N+
Sbjct: 3   KLQLLLFFFVSITVSILLVSPKVDGRKSLLQKEGRDDSNKLVEQSTTLDADFHGEMVGNN 62

Query: 62  QMKK-PTDLEDPGDEEGGSSEDDEEGSRDGVPGDDEGESEDTPSEDEGDFGDNEG----- 121
           Q KK PTDLED  +++ G + +DE+GS + VPGD+EGESE+   +D G+ G  EG     
Sbjct: 63  QKKKLPTDLEDNPEDQKGENSEDEKGSEEDVPGDEEGESEEA-GDDGGESGSTEGEYGDL 122

Query: 122 GDSGE--GVPGDDEGEFGGDDGGGDVVDVDDGDKGD-DGDENND--DNSDGGEQNDAVN 166
           GD GE  G P D   EFG DDGG       +GD+G+  G+E+ +  +   GG   + V+
Sbjct: 123 GDCGEESGGPKDCGAEFGDDDGG-----AFEGDEGEAPGEESGEVPEYQGGGGSGEEVS 175

BLAST of Lcy04g006690 vs. ExPASy TrEMBL
Match: A0A0A0KYS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420190 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 93/185 (50.27%), Postives = 118/185 (63.78%), Query Frame = 0

Query: 2   KLQLLLFLAFLSI----FLLSLEVDGRKSLLQKEYGKD--SKLVKQANILDADFQGEMVA 61
           KLQLL    F+SI     L+S EVDGRKSLLQKE G+D  +KLVKQ+  LDADF GEMV 
Sbjct: 3   KLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKE-GRDDFNKLVKQSTTLDADFHGEMVG 62

Query: 62  NHQMKK-PTDLED-PGDEEGGSSEDDEEGS-RDGVPGDDEGESEDTPSEDEGDF----GD 121
            +Q KK PTDLED P D++G +SE DE+GS  + VPG++EGE  D    D GD     GD
Sbjct: 63  RNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDL--GDVGDLGDCGGD 122

Query: 122 NEGGDSGEGV-PGDDEGEFGGDDGGGDVVDVDDGDKGDDGDENND--DNSDGGEQNDAVN 171
             GG  G+ V P +  GEFG DDGG   ++ DDG+ G   +E+ +  ++ DGGE  + V+
Sbjct: 123 ESGGPGGDFVYPNNCGGEFGDDDGG--ALEGDDGE-GPGSEESGEAPEDQDGGESGEEVS 181

BLAST of Lcy04g006690 vs. NCBI nr
Match: XP_038882385.1 (spore wall protein 2-like [Benincasa hispida])

HSP 1 Score: 101.3 bits (251), Expect = 8.6e-18
Identity = 95/165 (57.58%), Postives = 111/165 (67.27%), Query Frame = 0

Query: 1   MKLQLLLFLAFLSIFLLSLEVDGRKSLLQKE-YGKDSKLVKQANILDADFQGEMVA-NHQ 60
           MKLQ+   LA LSIFLLSLEVDGRKSLLQKE   +D+KL KQ+ ILDADF G+MVA NHQ
Sbjct: 1   MKLQV---LAILSIFLLSLEVDGRKSLLQKEDREEDAKLAKQSTILDADFHGKMVASNHQ 60

Query: 61  MKK-PTDLEDPGDEEGGSSEDDEEGSRDGVPGDDEGE-SEDTPSEDEGDFGD---NEGGD 120
           MKK PTDLED G++E  SSE D EG  +G+P  DEGE    TP  + G+  +   N GGD
Sbjct: 61  MKKFPTDLEDAGNQEDESSEGD-EGLEEGIPEGDEGEYGRGTPEGESGEVPEDTSNNGGD 120

Query: 121 SGEGVPGDDEGEFGGDDGGGDVVDVDDGDKGDDGDENNDDNSDGG 159
           S E  PGDD+GE  GDDG G      DGD+ D+G+    D  D G
Sbjct: 121 SEETEPGDDQGESKGDDGDG------DGDRDDEGESREGDLGDYG 155

BLAST of Lcy04g006690 vs. NCBI nr
Match: TYK09628.1 (hypothetical protein E5676_scaffold447G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 3.5e-11
Identity = 88/179 (49.16%), Postives = 114/179 (63.69%), Query Frame = 0

Query: 2   KLQLLLFL---AFLSIFLLSLEVDGRKSLLQKEYGKDS-KLVKQANILDADFQGEMVANH 61
           KLQLLLF      +SI L+S +VDGRKSLLQKE   DS KLV+Q+  LDADF GEMV N+
Sbjct: 3   KLQLLLFFFVSITVSILLVSPKVDGRKSLLQKEGRDDSNKLVEQSTTLDADFHGEMVGNN 62

Query: 62  QMKK-PTDLEDPGDEEGGSSEDDEEGSRDGVPGDDEGESEDTPSEDEGDFGDNEG----- 121
           Q KK PTDLED  +++ G + +DE+GS + VPGD+EGESE+   +D G+ G  EG     
Sbjct: 63  QKKKLPTDLEDNPEDQKGENSEDEKGSEEDVPGDEEGESEEA-GDDGGESGSTEGEYGDL 122

Query: 122 GDSGE--GVPGDDEGEFGGDDGGGDVVDVDDGDKGD-DGDENND--DNSDGGEQNDAVN 166
           GD GE  G P D   EFG DDGG       +GD+G+  G+E+ +  +   GG   + V+
Sbjct: 123 GDCGEESGGPKDCGAEFGDDDGG-----AFEGDEGEAPGEESGEVPEYQGGGGSGEEVS 175

BLAST of Lcy04g006690 vs. NCBI nr
Match: KGN54678.1 (hypothetical protein Csa_012366 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-10
Identity = 93/185 (50.27%), Postives = 118/185 (63.78%), Query Frame = 0

Query: 2   KLQLLLFLAFLSI----FLLSLEVDGRKSLLQKEYGKD--SKLVKQANILDADFQGEMVA 61
           KLQLL    F+SI     L+S EVDGRKSLLQKE G+D  +KLVKQ+  LDADF GEMV 
Sbjct: 3   KLQLLDLFFFVSIVSIVLLVSQEVDGRKSLLQKE-GRDDFNKLVKQSTTLDADFHGEMVG 62

Query: 62  NHQMKK-PTDLED-PGDEEGGSSEDDEEGS-RDGVPGDDEGESEDTPSEDEGDF----GD 121
            +Q KK PTDLED P D++G +SE DE+GS  + VPG++EGE  D    D GD     GD
Sbjct: 63  RNQKKKLPTDLEDNPEDQKGENSEADEKGSEEEDVPGEEEGEYGDL--GDVGDLGDCGGD 122

Query: 122 NEGGDSGEGV-PGDDEGEFGGDDGGGDVVDVDDGDKGDDGDENND--DNSDGGEQNDAVN 171
             GG  G+ V P +  GEFG DDGG   ++ DDG+ G   +E+ +  ++ DGGE  + V+
Sbjct: 123 ESGGPGGDFVYPNNCGGEFGDDDGG--ALEGDDGE-GPGSEESGEAPEDQDGGESGEEVS 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CEH41.7e-1149.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KYS71.4e-1050.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420190 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038882385.18.6e-1857.58spore wall protein 2-like [Benincasa hispida][more]
TYK09628.13.5e-1149.16hypothetical protein E5676_scaffold447G00230 [Cucumis melo var. makuwa][more]
KGN54678.12.9e-1050.27hypothetical protein Csa_012366 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..171
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..156

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g006690.1Lcy04g006690.1mRNA