Lcy04g004950 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g004950
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCCHC-type domain-containing protein
LocationChr04: 32341798 .. 32342746 (+)
RNA-Seq ExpressionLcy04g004950
SyntenyLcy04g004950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATCTTACAAAATTAGAGTTCGTAGCTCTTGATATCAATGGAAATAATTATTTGTCATGGGTGCTTGATGCTGAAATTCATTTGGATGCCATGAATCTTGGAGAAACAATCAAAGAAGAAAATACAACTTCAAATCAAGAAAAGGCAAAAGCCATGATTTTCCTTCGTCATCATCTTCATGAATCACGGTAAAAGATCCCTACATTTTATGGCAAAATTTGAAAGAAAGGTATGATCATCAAAAAACGGTTATTCTTCCAAAAGCTTGTTATGATTGGATGCCCCTGAGGTTGCAAGATTTTAAATCAGTAAGTGATTATAATTCTGCATTATTCAAAATAAGTTCAAAACTATTGTTATGCGAAGAAAAAATTACTGATGAGGATATGTTAGAGTAGACATTTTCTACTTTTCACGTCTTCTCGTGGCTGAACAAAATAATGAGCTGTTAATGAAAAATCATGAATCTCGACTAACTGGAGCAACACCATTCCCTAAAGTGAATGCTATAACTTCTAATAATCATGGTCGAGGTCGAGGTCGTGACCGTGGTAGAGGAAGAAATAATTATTCATTTCGTGGTGGTCACCATAATTATTCAAATTTCAAGAAGACCACAAATAATGATGATCATAAAGGAAAAGCTCCACAAAATAAGAATTCTAAAAGTGTTGAAAACCAATGCTTTCGATGTGGTATGAAGGGGCATTGGTCTCGTACTTGTCGTACGTCTAAACACCTAGTTGATCTCTATCAAGCCTCAAAGAAGAAAAAGGACACAAATGTGGAAGCAAATTTTGCATATCAAGAAGATGATGTATTTGACCCTTCTAACATGACACATTTGGATGTTGCTGATTTCTTTGAAACTCCTGAAGAGAAGATTGAAAGCACTGAAGGAGTAGCAAATACTTCTTTTAACTATGAGAATGTCCAAAATTAG

mRNA sequence

ATGACAAATCTTACAAAATTAGAGTTCGTAGCTCTTGATATCAATGGAAATAATTATTTGTCATGGGTGCTTGATGCTGAAATTCATTTGGATGCCATGAATCTTGGAGAAACAATCAAAGAAGAAAATACAACTTCAAATCAAGAAAAGGCAAAAGCCATGATTTTCCTTCGTCATCATCTTCATGAATCACGAGTAGACATTTTCTACTTTTCACGTCTTCTCGTGGCTGAACAAAATAATGAGCTGTTAATGAAAAATCATGAATCTCGACTAACTGGAGCAACACCATTCCCTAAAGTGAATGCTATAACTTCTAATAATCATGGTCGAGGTCGAGGTCGTGACCGTGGTAGAGGAAGAAATAATTATTCATTTCGTGGTGGTCACCATAATTATTCAAATTTCAAGAAGACCACAAATAATGATGATCATAAAGGAAAAGCTCCACAAAATAAGAATTCTAAAAGTGTTGAAAACCAATGCTTTCGATGTGGTATGAAGGGGCATTGGTCTCGTACTTGTCGTACGTCTAAACACCTAGTTGATCTCTATCAAGCCTCAAAGAAGAAAAAGGACACAAATGTGGAAGCAAATTTTGCATATCAAGAAGATGATGTATTTGACCCTTCTAACATGACACATTTGGATGTTGCTGATTTCTTTGAAACTCCTGAAGAGAAGATTGAAAGCACTGAAGGAGTAGCAAATACTTCTTTTAACTATGAGAATGTCCAAAATTAG

Coding sequence (CDS)

ATGACAAATCTTACAAAATTAGAGTTCGTAGCTCTTGATATCAATGGAAATAATTATTTGTCATGGGTGCTTGATGCTGAAATTCATTTGGATGCCATGAATCTTGGAGAAACAATCAAAGAAGAAAATACAACTTCAAATCAAGAAAAGGCAAAAGCCATGATTTTCCTTCGTCATCATCTTCATGAATCACGAGTAGACATTTTCTACTTTTCACGTCTTCTCGTGGCTGAACAAAATAATGAGCTGTTAATGAAAAATCATGAATCTCGACTAACTGGAGCAACACCATTCCCTAAAGTGAATGCTATAACTTCTAATAATCATGGTCGAGGTCGAGGTCGTGACCGTGGTAGAGGAAGAAATAATTATTCATTTCGTGGTGGTCACCATAATTATTCAAATTTCAAGAAGACCACAAATAATGATGATCATAAAGGAAAAGCTCCACAAAATAAGAATTCTAAAAGTGTTGAAAACCAATGCTTTCGATGTGGTATGAAGGGGCATTGGTCTCGTACTTGTCGTACGTCTAAACACCTAGTTGATCTCTATCAAGCCTCAAAGAAGAAAAAGGACACAAATGTGGAAGCAAATTTTGCATATCAAGAAGATGATGTATTTGACCCTTCTAACATGACACATTTGGATGTTGCTGATTTCTTTGAAACTCCTGAAGAGAAGATTGAAAGCACTGAAGGAGTAGCAAATACTTCTTTTAACTATGAGAATGTCCAAAATTAG

Protein sequence

MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTSNQEKAKAMIFLRHHLHESRVDIFYFSRLLVAEQNNELLMKNHESRLTGATPFPKVNAITSNNHGRGRGRDRGRGRNNYSFRGGHHNYSNFKKTTNNDDHKGKAPQNKNSKSVENQCFRCGMKGHWSRTCRTSKHLVDLYQASKKKKDTNVEANFAYQEDDVFDPSNMTHLDVADFFETPEEKIESTEGVANTSFNYENVQN
Homology
BLAST of Lcy04g004950 vs. ExPASy TrEMBL
Match: A0A6J1DDU8 (uncharacterized protein LOC111020141 OS=Momordica charantia OX=3673 GN=LOC111020141 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 118/183 (64.48%), Postives = 142/183 (77.60%), Query Frame = 0

Query: 72  SRLLVAEQNNELLMKNHESRLTGATPFPKVNAITSNN----HGRGRGRDRGRGRNNYSFR 131
           S LLVAEQNNELLMKN ESR TGATPF + NA+  NN     GRGRGRDRGRGRNN+SF 
Sbjct: 69  SCLLVAEQNNELLMKNRESRPTGATPFLEANAVNFNNRGRGRGRGRGRDRGRGRNNFSFL 128

Query: 132 GGHHNYSNFKKTTNNDDHKGKAPQNKNSKSVENQCFRCGMKGHWSRTCRTSKHLVDLYQA 191
           GG +N  NFK+TT N DHKGK PQ++NS+SVEN+CFRCGM GHW+  CRT KHLVDLYQA
Sbjct: 129 GGRYNRPNFKRTTRNVDHKGKTPQDQNSRSVENKCFRCGMTGHWAHICRTLKHLVDLYQA 188

Query: 192 SKKKKDTNVEANFAYQEDDVFDPSNMTHLDVADFFETPEEKI---ESTEGVANTSFNYEN 248
           S K+K  NVEAN AY + D+FD +N+T LDV DF E+P E+I    + +G+A+ SF++ N
Sbjct: 189 SLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPGEQIGTLSTMDGIASASFDFGN 248

BLAST of Lcy04g004950 vs. ExPASy TrEMBL
Match: A0A2G9GZZ8 (CCHC-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_16546 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 135/265 (50.94%), Postives = 162/265 (61.13%), Query Frame = 0

Query: 1   MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTSNQEKAKAMIFLRHH 60
           M NL K EFV LDI G NYLSWV+D ++HLDAM L  TI E+N  + Q +AKAMIFLRHH
Sbjct: 1   MANLAKFEFVPLDIFGKNYLSWVVDTKMHLDAMGLENTIVEKNEATIQNRAKAMIFLRHH 60

Query: 61  LHESRVDIFYFSRL------LVAEQNNELLMKNHESRLTGATPFPKVNAITSNNHGRGRG 120
           L ES    + +  L       + EQNNELL+KNHESR  G++PFP+ NA   +N  RGRG
Sbjct: 61  LDESLKAQYDWLHLRLQDFKSITEQNNELLIKNHESRPIGSSPFPEANATNFSNSDRGRG 120

Query: 121 RDRGRGRNNYSFRGGHHNYSNFKKTTNNDD--HKGKAPQNKN-----------SKSVENQ 180
           R  GRGR       G +NY N+    N+D   HKGK    K            SK +EN 
Sbjct: 121 RSHGRGRG-----CGRYNYRNY-GNDNHDSFYHKGKQSLQKKGDFSEKRLRKFSKDIENL 180

Query: 181 CFRCGMKGHWSRTCRTSKHLVDLYQASKKKKDTNVEANFA-----YQEDDVFDPSNMTHL 240
           CFRCG KGHWSR CRT KHLV+LYQAS KKK+ NVE NF      +  D+  +  ++ HL
Sbjct: 181 CFRCGSKGHWSRICRTPKHLVELYQASLKKKNKNVETNFTNSINNFDNDNDTNDIDIAHL 240

Query: 241 DVADFFETPEEKIESTEGVANTSFN 242
           DVADFFE PE+KI+   G  N   N
Sbjct: 241 DVADFFEHPEDKIDHLIGNGNVQKN 259

BLAST of Lcy04g004950 vs. ExPASy TrEMBL
Match: A0A2G9IB18 (CCHC-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_00296 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 2.0e-53
Identity = 129/261 (49.43%), Postives = 159/261 (60.92%), Query Frame = 0

Query: 1   MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTSNQEKAKAMIFLRHH 60
           M NL K EFV LDI+G NYLSWV+DA++HL+AM L  TI E+N T+ Q + KAMIFLRHH
Sbjct: 1   MANLAKFEFVPLDISGKNYLSWVVDAKMHLNAMGLENTIVEKNKTTIQNRVKAMIFLRHH 60

Query: 61  LHESRVDIFYFSR---------------LLVAEQNNELLMKNHESRLTGATPFPKVNAIT 120
           L ES + I Y ++               LLVAEQNNELLMKN ESR TG++PFP+ NAI 
Sbjct: 61  LDES-LKIEYLTQYREKGFKKYSELISCLLVAEQNNELLMKNRESRPTGSSPFPETNAIN 120

Query: 121 SNNHGRGRGRDRGRGRNNYSFRGGHHNYSNFKKTTNNDDHKGKAPQNKNSKSVENQCFRC 180
            +N GRGRGR+ GRGR                                  + +EN CFRC
Sbjct: 121 FSNFGRGRGRNHGRGR---------------------------------GRDIENLCFRC 180

Query: 181 GMKGHWSRTCRTSKHLVDLYQASKKKKDTNVEANFA-----YQEDDVFDPSNMTHLDVAD 240
             KGHWSR CRT KHLV+LYQAS KKK+ +VEANF      +  D+  + +++THLDVA+
Sbjct: 181 DSKGHWSRICRTPKHLVELYQASLKKKNESVEANFTNSINNFDNDNDTNDTDITHLDVAN 227

Query: 241 FFETPEEKIESTEGVANTSFN 242
           FFE PE+KI+   G  N   N
Sbjct: 241 FFEHPEDKIDHLIGNENIQRN 227

BLAST of Lcy04g004950 vs. ExPASy TrEMBL
Match: A0A6J1BE53 (uncharacterized protein LOC110426814 OS=Herrania umbratica OX=108875 GN=LOC110426814 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-52
Identity = 133/271 (49.08%), Postives = 168/271 (61.99%), Query Frame = 0

Query: 1   MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTSNQEKAKAMIFLRHH 60
           M+NLTKLEFVALDI G NYLSW+LDAEI+LDAM LG+TIK +N  SNQ+K KAMIFLRHH
Sbjct: 28  MSNLTKLEFVALDITGKNYLSWILDAEIYLDAMGLGDTIKGKNEASNQDKVKAMIFLRHH 87

Query: 61  LHE----------SRVDIF------YFSRLLV-------AEQNNELLMKNHESRLTGATP 120
           LHE            VD++      Y  + +V         +NNELLMKN ES+  G+ P
Sbjct: 88  LHEGLKIEYLTIKDPVDLWKSLKERYDHQKIVILRLQDFKTENNELLMKNRESQPIGSAP 147

Query: 121 FPKVNAITSNNHGRG----RGRDRGRGR--NNYSFRGGHHNYSNFKKTT-----NNDDHK 180
           FP+VNA +  N  RG     GR+ GRG+  +NY  RGG+ NY +  K T     N++  +
Sbjct: 148 FPEVNATSFRNSDRGCDRNHGRNCGRGKSPHNYHSRGGYINYYSDNKNTHQKWMNSEKIQ 207

Query: 181 GKAPQNKNSKSVENQCFRCGMKGHWSRTCRTSKHLVDLYQASKKKKDTNVEANFAYQEDD 238
            K    ++ K +EN C++CGMKGHWSRTCRT KHLV+LYQAS K K  N+E  F      
Sbjct: 208 EKDKGGQSKKKIENACYQCGMKGHWSRTCRTPKHLVELYQASLKDKGKNIETTFVKDNSQ 267

BLAST of Lcy04g004950 vs. ExPASy TrEMBL
Match: A0A2G9HMQ1 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08517 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-51
Identity = 141/302 (46.69%), Postives = 169/302 (55.96%), Query Frame = 0

Query: 1   MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTSNQEKAKAMIFLRHH 60
           M+NLTKLEF ALDI G NYLSWVLDAEIHLD   LG  I  EN  S+Q+K KAMIFLRHH
Sbjct: 1   MSNLTKLEFEALDITGKNYLSWVLDAEIHLDTKGLGAAIIAENEISSQDKVKAMIFLRHH 60

Query: 61  LHES-------------------------------RVDIFYF------------------ 120
           LHE                                R DI  F                  
Sbjct: 61  LHEGLKVEYLTVKDPLELWNNLKECLTTRKQRELIRKDISIFHASDVLLQQQYCEKDFKK 120

Query: 121 -----SRLLVAEQNNELLMKNHESRLTGATPFPKVNAITSNNHGRGRGRD------RGRG 180
                S +LVAEQNNELLMKN+E+R T + PFP+VNA   N  G G+ R       RGRG
Sbjct: 121 YAELISCMLVAEQNNELLMKNYEARPTSSAPFPEVNAAVLNKPGGGQNRGHNNTHRRGRG 180

Query: 181 RNNYSFRGGHHNYSNFKKTTNNDD-HKGKAPQNKNSKSVENQCFRCGMKGHWSRTCRTSK 229
           RNNY +   ++  S+ +K  NND+  K K  Q+ +SK  EN C++CG KGHWSRTCRT K
Sbjct: 181 RNNYCYLSDNNYNSHHQKWNNNDEKEKDKGCQSNSSKDKENVCYQCG-KGHWSRTCRTPK 240

BLAST of Lcy04g004950 vs. NCBI nr
Match: XP_031276865.1 (uncharacterized protein LOC116135296 [Pistacia vera])

HSP 1 Score: 268.1 bits (684), Expect = 7.6e-68
Identity = 163/305 (53.44%), Postives = 190/305 (62.30%), Query Frame = 0

Query: 1   MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTSNQEKAKAMIFLRHH 60
           MTNLTKLEFVALDI G NYLSW+LD EIHLDAM LG+TIKE N +SNQ+KAKAMIFLRHH
Sbjct: 1   MTNLTKLEFVALDITGKNYLSWILDGEIHLDAMGLGDTIKEGNESSNQDKAKAMIFLRHH 60

Query: 61  LHE----------------------------------------------SRVDIFY---- 120
           LHE                                              S V + Y    
Sbjct: 61  LHEGLKIEYLTVKDPLLWENLKESSQLKVCRENITDEDMLEKTFSTFHASNVLLQYQYRE 120

Query: 121 ---------FSRLLVAEQNNELLMKNHESRLTGATPFPKVNAITSNNHGRGRGRDRGRG- 180
                     S LLV EQNNELLMKNHE+R TG+TPFPKVN   SNNHGRGRGR RGRG 
Sbjct: 121 KGFQKYSKLISCLLVVEQNNELLMKNHEARPTGSTPFPKVNVTISNNHGRGRGRGRGRGR 180

Query: 181 ---RNNYSFRGGHHNYSNFK--KTTNNDD---HKGKAPQNKNSKSVENQCFRCGMKGHWS 226
              RNN++    ++N SN+K  +  NND+    KGK+ Q+KNSK+ EN C+RCGMKGHWS
Sbjct: 181 SQSRNNHNRGNYNYNSSNYKSHQKLNNDEEKKEKGKSGQHKNSKNAENLCYRCGMKGHWS 240

BLAST of Lcy04g004950 vs. NCBI nr
Match: XP_017974461.1 (PREDICTED: uncharacterized protein LOC108661545 [Theobroma cacao])

HSP 1 Score: 242.3 bits (617), Expect = 4.5e-60
Identity = 145/282 (51.42%), Postives = 177/282 (62.77%), Query Frame = 0

Query: 1   MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTSNQEKAKAMIFLRHH 60
           M+NLTKLEFVALDI G NYLSW+LDAEIHL+AM LG+TIKEEN   NQ+KAKAMIFLRHH
Sbjct: 1   MSNLTKLEFVALDITGKNYLSWILDAEIHLNAMGLGDTIKEENKAFNQDKAKAMIFLRHH 60

Query: 61  LH----------ESRVDIF------------------------YFSRLLVAEQNNELLMK 120
           LH          +  VD++                          S LLVA++NNELLMK
Sbjct: 61  LHKGLKIEYLTIKDPVDLWKSLNERYDHQKTQYREKGFKKYSELISCLLVAKENNELLMK 120

Query: 121 NHESRLTGATPFPKVNAITSNNHGRGRGRDRGR------GRNNYSFRGGHHNYSNFKKTT 180
           NHESR  G+TPFP+VNA +  N GRG GR+RGR      GR+NY   GG+ NY +  K T
Sbjct: 121 NHESRPIGSTPFPEVNATSFRNSGRGLGRNRGRNHGRRKGRHNYRSIGGYTNYYSNNKNT 180

Query: 181 -----NNDDHKGKAPQNKNSKSVENQCFRCGMKGHWSRTCRTSKHLVDLYQASKKKKDTN 238
                N+++   K    ++ ++ EN C+RCGMKGHWSRTCRT KHLV+LYQAS K K  N
Sbjct: 181 HQKWMNSEEIHEKDKGGQSKRNTENVCYRCGMKGHWSRTCRTPKHLVELYQASLKDKGKN 240

BLAST of Lcy04g004950 vs. NCBI nr
Match: XP_038970581.1 (uncharacterized protein LOC120104123 [Phoenix dactylifera])

HSP 1 Score: 233.8 bits (595), Expect = 1.6e-57
Identity = 157/347 (45.24%), Postives = 185/347 (53.31%), Query Frame = 0

Query: 1   MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTSNQEKAKAMIFLRHH 60
           M+NLTKLEFVALDI+G NYLSW LDAEIHLDAMNLGETIKE N  S Q++AK MIFLRHH
Sbjct: 1   MSNLTKLEFVALDISGKNYLSWTLDAEIHLDAMNLGETIKEGNDASLQDRAKTMIFLRHH 60

Query: 61  LHES----------------------------------------RVDIF----------- 120
           LHES                                        R+  F           
Sbjct: 61  LHESLKAEYLTVKDPYVLWTNLKERYDHQKYTILPKAHYEWIHLRLQDFKTVSEYNSAVF 120

Query: 121 -----------------------------------------------YFSRLLVAEQNNE 180
                                                            S LLVAEQNNE
Sbjct: 121 RITSQLKLCGEKITEQDLLEKTYSTFHASNVLLQRQYRERGFKRYSELISCLLVAEQNNE 180

Query: 181 LLMKNHESRLTGATPFPKVNAITS--------NNHGRGRGRDRGRGRNNYSFRGGHHNYS 240
           LLMKNH+SR TG+ PFP+VNA +S        ++HGRGRGR RGRGRN + +RGG+H   
Sbjct: 181 LLMKNHQSRPTGSDPFPEVNAASSVHHRHDRGHSHGRGRGRSRGRGRNKHWYRGGYHGI- 240

Query: 241 NFKKTTNNDDHKGKAPQNKNSKSVENQCFRCGMKGHWSRTCRTSKHLVDLYQASKKKKDT 242
           NFKK+ N    K + P N +SK+ E+ C+RCGMK HWSRTCRT+KHLVDLYQAS K K  
Sbjct: 241 NFKKSAN----KEEKPHN-SSKNKESDCYRCGMKEHWSRTCRTAKHLVDLYQASLKGKGN 300

BLAST of Lcy04g004950 vs. NCBI nr
Match: XP_030478151.1 (uncharacterized protein LOC115695209 [Cannabis sativa])

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-56
Identity = 144/288 (50.00%), Postives = 177/288 (61.46%), Query Frame = 0

Query: 1   MTNLTKLEFVALDINGNNYLSWVLDAEIHLDAMNLGETIKEENTTSNQEKAKAMIFLRHH 60
           MTNL KL+FVALDI+G NYLSW+LDAEIHLDAM LG+TIK +NT + Q KAKAMIFLRHH
Sbjct: 1   MTNLAKLDFVALDISGKNYLSWILDAEIHLDAMGLGDTIKYQNTETKQNKAKAMIFLRHH 60

Query: 61  LHESRVDIFYFS---------------------------------RLLVAEQNNELLMKN 120
           LHE R+   Y +                                 RL   + NNELLMKN
Sbjct: 61  LHE-RLKSEYLTVKDPLVLWQNLKERYDHQKTVILPKAKNDWLHMRLQDFKSNNELLMKN 120

Query: 121 HESRLTGATPFPKVNAITSNNHGRGRGRD------RGR--GRNNYSFRGGH--HNYSNFK 180
           HESR TG+ PFP+VNA   +NH   R RD      RGR   R+N   R G   ++Y+  K
Sbjct: 121 HESRPTGSAPFPEVNATIVDNHNHSRSRDHNRSNRRGRDHNRSNVWHRNGQNKNSYTPMK 180

Query: 181 KTTNNDDHKGKAPQNKNSKSVENQCFRCGMKGHWSRTCRTSKHLVDLYQASKKKKDTNVE 240
            TT   ++KGK PQN N ++ EN C RCG+KGHW+R CRT+KHL +LYQAS K K+  +E
Sbjct: 181 STTT--ENKGKCPQNNNHRNSENLCSRCGIKGHWARACRTAKHLANLYQASVKGKE-KIE 240

Query: 241 ANFAYQEDDVF-DPSNMTHLDVADFFETPEEKIESTEGVANTSFNYEN 245
           ANFAYQ+D    +P ++THLDVADFF   E+ I +   + N   N  N
Sbjct: 241 ANFAYQDDGFLKEPLDITHLDVADFFN--EDLINNNMNIDNGDVNVHN 282

BLAST of Lcy04g004950 vs. NCBI nr
Match: XP_022152405.1 (uncharacterized protein LOC111020141 [Momordica charantia])

HSP 1 Score: 226.1 bits (575), Expect = 3.3e-55
Identity = 118/183 (64.48%), Postives = 142/183 (77.60%), Query Frame = 0

Query: 72  SRLLVAEQNNELLMKNHESRLTGATPFPKVNAITSNN----HGRGRGRDRGRGRNNYSFR 131
           S LLVAEQNNELLMKN ESR TGATPF + NA+  NN     GRGRGRDRGRGRNN+SF 
Sbjct: 69  SCLLVAEQNNELLMKNRESRPTGATPFLEANAVNFNNRGRGRGRGRGRDRGRGRNNFSFL 128

Query: 132 GGHHNYSNFKKTTNNDDHKGKAPQNKNSKSVENQCFRCGMKGHWSRTCRTSKHLVDLYQA 191
           GG +N  NFK+TT N DHKGK PQ++NS+SVEN+CFRCGM GHW+  CRT KHLVDLYQA
Sbjct: 129 GGRYNRPNFKRTTRNVDHKGKTPQDQNSRSVENKCFRCGMTGHWAHICRTLKHLVDLYQA 188

Query: 192 SKKKKDTNVEANFAYQEDDVFDPSNMTHLDVADFFETPEEKI---ESTEGVANTSFNYEN 248
           S K+K  NVEAN AY + D+FD +N+T LDV DF E+P E+I    + +G+A+ SF++ N
Sbjct: 189 SLKEKGNNVEANLAYHDGDIFDAANITSLDVTDFLESPGEQIGTLSTMDGIASASFDFGN 248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DDU81.6e-5564.48uncharacterized protein LOC111020141 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A2G9GZZ82.3e-5450.94CCHC-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=C... [more]
A0A2G9IB182.0e-5349.43CCHC-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=C... [more]
A0A6J1BE531.7e-5249.08uncharacterized protein LOC110426814 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
A0A2G9HMQ11.4e-5146.69Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08517 P... [more]
Match NameE-valueIdentityDescription
XP_031276865.17.6e-6853.44uncharacterized protein LOC116135296 [Pistacia vera][more]
XP_017974461.14.5e-6051.42PREDICTED: uncharacterized protein LOC108661545 [Theobroma cacao][more]
XP_038970581.11.6e-5745.24uncharacterized protein LOC120104123 [Phoenix dactylifera][more]
XP_030478151.11.8e-5650.00uncharacterized protein LOC115695209 [Cannabis sativa][more]
XP_022152405.13.3e-5564.48uncharacterized protein LOC111020141 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 161..177
e-value: 0.0081
score: 24.1
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 162..176
score: 9.520856
NoneNo IPR availableGENE3D4.10.60.10coord: 151..195
e-value: 9.2E-7
score: 30.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..152
NoneNo IPR availablePANTHERPTHR33325:SF5ZINC FINGER, CCHC-TYPE-RELATEDcoord: 1..64
NoneNo IPR availablePANTHERPTHR33325:SF5ZINC FINGER, CCHC-TYPE-RELATEDcoord: 72..198
NoneNo IPR availablePANTHERPTHR33325ZINC FINGER, CCHC-TYPE-RELATEDcoord: 72..198
NoneNo IPR availablePANTHERPTHR33325ZINC FINGER, CCHC-TYPE-RELATEDcoord: 1..64
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 143..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g004950.1Lcy04g004950.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding