Lcy04g004390 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g004390
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	NADH:ubiquinone oxidoreductase, ESSS subunit
Location	Chr04: 29128484 .. 29129272 (-)
RNA-Seq Expression	Lcy04g004390
Synteny	Lcy04g004390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGAATCCCTCTCCTTCTCCCTTTCTCTTTCGCTCTCGCAGGATCGGTCGCAGAGTCGCTGAAATCGAAGATCAACTCAAAATGCCATCGCCAACGCCCTTTACGACCGCCTCAAATATGCTCCGGCACCGCCTTCTCCCTTCTCTTCGGACCCGCGGCGGCGCCTCCGCCGGCCAGAGCCGATGGACCAGTCCTGGCCACGAGGAGCGGCCTAAGGGCTATCTTTTCAATCGGACGCCGTCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAGCTCGGTATCTCTGCCTCTGGATCATCTGAATCTGATTGAATTTCGTGGTTCTTATGCACTTTTGGGAACTGGGTTGTCTGATTTTAATTCCTCCGTTGAAAAGGGGTTTCGGATGTATGGTGGGATTTATGAGATGTTGTCGATATTCTGTAGTTCAATAAGTTTTCCTACATGTTCTTATTGGCTCTTTTGGAGCTTCAGTAACAGTTTTATTTTTTGTTAGCTTTGGACATATTTGACGTCGTATATGTCAAGTACTTGAGAATTTTAACTTTCTGCTATGTTTCAATTCAGTTGCCGATGTTGAGTTATGTATACGGATTCTCTAATAATTTAGTTTTGTTGCATGTCTTGTGACAATGATTATCGTGGCAATCTATTAT

mRNA sequence

CAAGAATCCCTCTCCTTCTCCCTTTCTCTTTCGCTCTCGCAGGATCGGTCGCAGAGTCGCTGAAATCGAAGATCAACTCAAAATGCCATCGCCAACGCCCTTTACGACCGCCTCAAATATGCTCCGGCACCGCCTTCTCCCTTCTCTTCGGACCCGCGGCGGCGCCTCCGCCGGCCAGAGCCGATGGACCAGTCCTGGCCACGAGGAGCGGCCTAAGGGCTATCTTTTCAATCGGACGCCGTCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAGCTCGGTATCTCTGCCTCTGGATCATCTGAATCTGATTGAATTTCGTGGTTCTTATGCACTTTTGGGAACTGGGTTGTCTGATTTTAATTCCTCCGTTGAAAAGGGGTTTCGGATGTATGGTGGGATTTATGAGATGTTGTCGATATTCTGTAGTTCAATAAGTTTTCCTACATGTTCTTATTGGCTCTTTTGGAGCTTCAGTAACAGTTTTATTTTTTGTTAGCTTTGGACATATTTGACGTCGTATATGTCAAGTACTTGAGAATTTTAACTTTCTGCTATGTTTCAATTCAGTTGCCGATGTTGAGTTATGTATACGGATTCTCTAATAATTTAGTTTTGTTGCATGTCTTGTGACAATGATTATCGTGGCAATCTATTAT

Coding sequence (CDS)

ATGCCATCGCCAACGCCCTTTACGACCGCCTCAAATATGCTCCGGCACCGCCTTCTCCCTTCTCTTCGGACCCGCGGCGGCGCCTCCGCCGGCCAGAGCCGATGGACCAGTCCTGGCCACGAGGAGCGGCCTAAGGGCTATCTTTTCAATCGGACGCCGTCTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAGCTCGGTATCTCTGCCTCTGGATCATCTGAATCTGATTGA

Protein sequence

MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSESD

Homology

[Close]

BLAST of Lcy04g004390 vs. ExPASy TrEMBL
Match: A0A6J1DCT8 (uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019565 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.6e-59
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPSP PFT ASNMLRHRLLP+LRTRGGA+AGQSRWTSPGHEERPKGYLFNRTP PPGQSR
Sbjct: 1   MPSPAPFTRASNMLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME +GISASGSSESD
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

[Close]

BLAST of Lcy04g004390 vs. ExPASy TrEMBL
Match: A0A6J1HPH2 (uncharacterized protein LOC111466129 OS=Cucurbita maxima OX=3661 GN=LOC111466129 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 112/120 (93.33%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPSPTPF TASNMLRHRLLPSLRTRGGA+ GQSRWTSPGHEE+PKGYLFNRTP PPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L IS SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

[Close]

BLAST of Lcy04g004390 vs. ExPASy TrEMBL
Match: A0A6J1EGU8 (uncharacterized protein LOC111432424 OS=Cucurbita moschata OX=3662 GN=LOC111432424 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.2e-58
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPSPTPF TASNMLRHRLLPSLRTRGGA+ GQSRWTSPGHEE+PKGYLFNRTP PPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +S SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120

[Close]

BLAST of Lcy04g004390 vs. ExPASy TrEMBL
Match: A0A067KZT1 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06813 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.2e-53
Identity = 104/118 (88.14%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPSP PFTTAS MLR RL  SLRTRGG +AG SRWTSPGHEERPKGYLFNRTP P GQSR
Sbjct: 1   MPSPQPFTTASTMLRQRLASSLRTRGGGAAGTSRWTSPGHEERPKGYLFNRTPPPAGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+S SG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGLSGSGESE 118

[Close]

BLAST of Lcy04g004390 vs. ExPASy TrEMBL
Match: A0A2C9V8P2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G030500 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 104/118 (88.14%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPSP PFTTAS+MLR RL  SLR RGGA+AG SRWTSPGHEERPKGYLFNRTP PPGQSR
Sbjct: 1   MPSPQPFTTASSMLRQRLASSLRIRGGAAAGPSRWTSPGHEERPKGYLFNRTPLPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSE 119
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKLG S SG SE
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLGASGSGESE 118

[Close]

BLAST of Lcy04g004390 vs. NCBI nr
Match: XP_038881129.1 (uncharacterized protein LOC120072731 [Benincasa hispida])

HSP 1 Score: 241.1 bits (614), Expect = 4.9e-60
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPSPTPFT ASNMLRHRLLPSLRTRGGA+AGQSRWTSPGHE+RPKGYLFNRTP PPGQSR
Sbjct: 1   MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+S SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGVSGSGSSESD 120

[Close]

BLAST of Lcy04g004390 vs. NCBI nr
Match: XP_022151653.1 (uncharacterized protein LOC111019565 [Momordica charantia])

HSP 1 Score: 237.7 bits (605), Expect = 5.4e-59
Identity = 112/120 (93.33%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPSP PFT ASNMLRHRLLP+LRTRGGA+AGQSRWTSPGHEERPKGYLFNRTP PPGQSR
Sbjct: 1   MPSPAPFTRASNMLRHRLLPTLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSESD 120
           KWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME +GISASGSSESD
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENMGISASGSSESD 120

[Close]

BLAST of Lcy04g004390 vs. NCBI nr
Match: XP_023517134.1 (uncharacterized protein LOC111780983 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 7.0e-59
Identity = 113/120 (94.17%), Postives = 115/120 (95.83%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPSPTPF TASNMLRHRLLPSLRTRGGA+ GQSRWTSPGHEERPKGYLFNRTP PPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEERPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +SASGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSASGSSESD 120

[Close]

BLAST of Lcy04g004390 vs. NCBI nr
Match: XP_022966491.1 (uncharacterized protein LOC111466129 [Cucurbita maxima])

HSP 1 Score: 235.3 bits (599), Expect = 2.7e-58
Identity = 112/120 (93.33%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPSPTPF TASNMLRHRLLPSLRTRGGA+ GQSRWTSPGHEE+PKGYLFNRTP PPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEQPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L IS SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAISGSGSSESD 120

[Close]

BLAST of Lcy04g004390 vs. NCBI nr
Match: XP_022925065.1 (uncharacterized protein LOC111432424 [Cucurbita moschata] >KAG6595653.1 hypothetical protein SDJN03_12206, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027613.1 hypothetical protein SDJN02_11627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.6 bits (597), Expect = 4.5e-58
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPSPTPF TASNMLRHRLLPSLRTRGGA+ GQSRWTSPGHEE+PKGYLFNRTP PPGQSR
Sbjct: 1   MPSPTPFATASNMLRHRLLPSLRTRGGAATGQSRWTSPGHEEKPKGYLFNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGSSESD 120
           KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEME L +S SGSSESD
Sbjct: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLAMSGSGSSESD 120

[Close]

BLAST of Lcy04g004390 vs. TAIR 10
Match: AT2G42310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 170.6 bits (431), Expect = 7.5e-43
Identity = 82/116 (70.69%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           MPS    T A+  LR+R+       G  SAG SRW +PGHEERPKGY  NRTP  PGQSR
Sbjct: 1   MPSTQSLTVAAKTLRNRI---FSRSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGS 117
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKL  +   S
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

[Close]

BLAST of Lcy04g004390 vs. TAIR 10
Match: AT3G57785.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 168.3 bits (425), Expect = 3.7e-42
Identity = 82/116 (70.69%), Postives = 90/116 (77.59%), Query Frame = 0


Query: 1   MPSPTPFTTASNMLRHRLLPSLRTRGGASAGQSRWTSPGHEERPKGYLFNRTPSPPGQSR 60
           M S  P   A+  LR+R+    R+ G  S G SRW +PGHEERPKGY  NRTP PPGQSR
Sbjct: 1   MASTKPLIVAAKTLRNRI--HFRS-GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSR 60

Query: 61  KWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISASGS 117
           KWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKL  +   S
Sbjct: 61  KWEDWELPCYITSFLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLASAGDSS 113

The following BLAST results are available for this feature:

BLAST of Lcy04g004390 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g004390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCT8	2.6e-59	93.33	uncharacterized protein LOC111019565 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1HPH2	1.3e-58	93.33	uncharacterized protein LOC111466129 OS=Cucurbita maxima OX=3661 GN=LOC111466129...	[more]
A0A6J1EGU8	2.2e-58	92.50	uncharacterized protein LOC111432424 OS=Cucurbita moschata OX=3662 GN=LOC1114324...	[more]
A0A067KZT1	1.2e-53	88.14	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06813 PE=4 SV=1	[more]
A0A2C9V8P2	1.6e-53	88.14	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G030500 PE=4 SV=...	[more]

BLAST of Lcy04g004390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881129.1	4.9e-60	95.00	uncharacterized protein LOC120072731 [Benincasa hispida]	[more]
XP_022151653.1	5.4e-59	93.33	uncharacterized protein LOC111019565 [Momordica charantia]	[more]
XP_023517134.1	7.0e-59	94.17	uncharacterized protein LOC111780983 [Cucurbita pepo subsp. pepo]	[more]
XP_022966491.1	2.7e-58	93.33	uncharacterized protein LOC111466129 [Cucurbita maxima]	[more]
XP_022925065.1	4.5e-58	92.50	uncharacterized protein LOC111432424 [Cucurbita moschata] >KAG6595653.1 hypothet...	[more]

BLAST of Lcy04g004390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42310.1	7.5e-43	70.69	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57785.1	3.7e-42	70.69	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..60
None	No IPR available	PANTHER	PTHR40637	ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEIN	coord: 10..111
None	No IPR available	PANTHER	PTHR40637:SF3	BNAA03G19790D PROTEIN	coord: 10..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g004390.1	Lcy04g004390.1	mRNA