Lcy04g002720 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g002720
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptiontranscription factor bHLH139-like
LocationChr04: 21011764 .. 21013054 (+)
RNA-Seq ExpressionLcy04g002720
SyntenyLcy04g002720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCTGCCTTTTCCTTCCTTCTTTCATTTTCTTGTGTTTTTGGAGCAAATTGGAGAGAAGAAAGTAATGATAATAATGCTGCTGATCAATTTCCTTGTGTTGGTGCTGCTGATTATCATATGTCGATGTCTGGTGGCGCGATTGAAGAGAAGAAGATGGAGTCTGTTTTCTCCGCTTGTAATGACATTTTGTTGGAAGAGATCAATGGCTTTTGCGGTGAAGATAGATTTTTAAACGTGGATGTTGAAACCCATCAAGGGGATAATGCTAGCAATCTTGCAAATGCATTGCACCACAAAAGGAAGTCCATTGTTGTCGTTGGTGATGATGATCTTGATCACAACAAGCTCAACAACGACCCCAATAAGAGCATTCATGCTTCAAACAATGTAAGTAAATTTATCGTAACCCATCAACTTAAAATTTTAAATTCATTAGTTTTTTCAAGTGTTAAAGATAACGAGTTCGATCTTCATGCATATTCTTGTGATAGTATGATATTGTCCACTCTAAACTAATTTCAGTACTCAAAGTTCCATATCATTGAAATATTACCACGTGGAACATTATTTGTTTTTCCAATGTTAATATACATGATATAAGATTAGGATGACATCTAGGTTTAGGTAGGTTTAAAGATTTGTAAATTTCTAGTTTGGGATAAACAAATATGTATACTAATCCTAAGTTTGTGTTTTGGGTTTAGAAAGGGTCATTTTGATATTATGATATGATTATGTTTTGTCTATTTAACTTGCTAGAGGAAGGGAAGGACATGAGAAAAAGTAGTGTAAGACAATGAGGAAGGGAAGGGCATGAGAAAAAGTAGTGAAGACAGTAGTCTTCGAGAGAATTCAACCCTCTCGAATTGGTTGAAATCTAACCGAAACCCAAAAAGAGTGATGAATTTGACCAAACTATAGAGCTCCATTGATTGGTTTTGAAAGTATATATATATATTTTCTAGAGCATAAAACTGAAAAATAAAGATCGATTCAGTTTGGATAGATTTTGTTTGTTTTAGTCGGTTTGATTCACCTAGTTCAGCTCCATTGGGTTGCTGCATTTCTCTTGGTTATTGGGTGATTAACAATTGTGTCCAGTTAGATTTTCATTAACTTTTGGGGCTTGGTAATGATTAATGGAATTTAAGGATGTTGAGTTAGTTTTGTATTTTGATGTCATGTGGTATTTGGATATTTGCAGGCAACAATGGAATATGGAGAGGCTGAGTCATTTTCTCTGTTATTGGTCCTCGAAGCATTCACCTTTCTGGTTATTTTCTAA

mRNA sequence

ATGTTTTCTGCCTTTTCCTTCCTTCTTTCATTTTCTTGTGTTTTTGGAGCAAATTGGAGAGAAGAAAGTAATGATAATAATGCTGCTGATCAATTTCCTTGTGTTGGTGCTGCTGATTATCATATGTCGATGTCTGGTGGCGCGATTGAAGAGAAGAAGATGGAGTCTGTTTTCTCCGCTTGTAATGACATTTTGTTGGAAGAGATCAATGGCTTTTGCGGTGAAGATAGATTTTTAAACGTGGATGTTGAAACCCATCAAGGGGATAATGCTAGCAATCTTGCAAATGCATTGCACCACAAAAGGAAGTCCATTGTTGTCGTTGGTGATGATGATCTTGATCACAACAAGCTCAACAACGACCCCAATAAGAGCATTCATGCTTCAAACAATGCAACAATGGAATATGGAGAGGCTGAGTCATTTTCTCTGTTATTGGTCCTCGAAGCATTCACCTTTCTGGTTATTTTCTAA

Coding sequence (CDS)

ATGTTTTCTGCCTTTTCCTTCCTTCTTTCATTTTCTTGTGTTTTTGGAGCAAATTGGAGAGAAGAAAGTAATGATAATAATGCTGCTGATCAATTTCCTTGTGTTGGTGCTGCTGATTATCATATGTCGATGTCTGGTGGCGCGATTGAAGAGAAGAAGATGGAGTCTGTTTTCTCCGCTTGTAATGACATTTTGTTGGAAGAGATCAATGGCTTTTGCGGTGAAGATAGATTTTTAAACGTGGATGTTGAAACCCATCAAGGGGATAATGCTAGCAATCTTGCAAATGCATTGCACCACAAAAGGAAGTCCATTGTTGTCGTTGGTGATGATGATCTTGATCACAACAAGCTCAACAACGACCCCAATAAGAGCATTCATGCTTCAAACAATGCAACAATGGAATATGGAGAGGCTGAGTCATTTTCTCTGTTATTGGTCCTCGAAGCATTCACCTTTCTGGTTATTTTCTAA

Protein sequence

MFSAFSFLLSFSCVFGANWREESNDNNAADQFPCVGAADYHMSMSGGAIEEKKMESVFSACNDILLEEINGFCGEDRFLNVDVETHQGDNASNLANALHHKRKSIVVVGDDDLDHNKLNNDPNKSIHASNNATMEYGEAESFSLLLVLEAFTFLVIF
Homology
BLAST of Lcy04g002720 vs. ExPASy TrEMBL
Match: A0A6J1IQF1 (transcription factor bHLH54-like OS=Cucurbita maxima OX=3661 GN=LOC111477249 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 27  NAADQFPCVGAADYHMSMSGGAIEEKKMESVFSACNDILLEEINGFCGEDRFLNVDVETH 86
           NA DQFPC+ AAD++MSMS  AIEE +M+S+FSAC D+LL+EI+ F GEDR+LN+DV+T 
Sbjct: 57  NAIDQFPCIAAADHYMSMSNAAIEENEMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQ 116

Query: 87  QG--DNASNLANALHHKRKSIVVVGDDDLDHNKLNNDPNKSIHASNN 132
            G  +NA+N A A HHKRKSIVV  DD   HN LNN P K I  SNN
Sbjct: 117 IGNDNNATNSAKAFHHKRKSIVVADDDHHHHNNLNN-PTKKIRTSNN 162

BLAST of Lcy04g002720 vs. ExPASy TrEMBL
Match: A0A6J1FEZ9 (transcription factor bHLH139-like OS=Cucurbita moschata OX=3662 GN=LOC111443476 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 27  NAADQFPCVGAADYHMSMSGGAIEEKKMESVFSACNDILLEEINGFCGEDRFLNVDVETH 86
           NA DQFPC+ AAD++MSMS  AIEE KM+S+FSAC D+LL+EI+ F GEDR+LN+DV+T 
Sbjct: 57  NAIDQFPCIAAADHYMSMSNAAIEENKMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQ 116

Query: 87  QGD--NASNLANALHHKRKSIVVVGDDDLDHNKLNNDPNKSIHASNN 132
            G+  NA+N A A HHKRKSI VV DDD  HN LNN P K I  SNN
Sbjct: 117 IGNDHNATNSAKAFHHKRKSI-VVADDDHHHNNLNN-PTKKIRTSNN 161

BLAST of Lcy04g002720 vs. ExPASy TrEMBL
Match: A0A0A0L533 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642470 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.8e-10
Identity = 60/136 (44.12%), Postives = 79/136 (58.09%), Query Frame = 0

Query: 17  ANWREESNDNNAADQ--FPCVGAA-----DY----HMSMSGGAIEEKKMESVFSACN-DI 76
           A W   + D+N  DQ  FPC+ AA     DY    HMSMS    +   +ES+FSA + + 
Sbjct: 48  AAWFCSNLDSNGVDQYPFPCIAAAAAVYDDYYGHNHMSMSIIDEDNNNLESIFSASSTEF 107

Query: 77  LLEEIN--GFCGEDRFLNVD-VETHQGDNASNLANAL-HHKRKSIVVVGDD-DLDHNKLN 136
           LL+EI+  GF  + +FLN+D V+TH GD   +  N L HHKRKS +V  DD D D N+L 
Sbjct: 108 LLQEISSTGFSEDHKFLNMDIVQTHLGDEDDD--NPLFHHKRKSSIVAPDDHDHDQNQLI 167

BLAST of Lcy04g002720 vs. ExPASy TrEMBL
Match: A0A5D3D9B7 (Transcription factor bHLH85-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002780 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 0

Query: 31  QFPCVGAA------DY----HMSMSGGAIEEKKMESVFSACN-DILLEEIN--GFCGED- 90
           QFPC+ AA      DY    HMSMS    + K +ES+FSA + DILL+ I+  GF  ED 
Sbjct: 61  QFPCIAAAAAAAYDDYYGHNHMSMSIIDEDNKNLESIFSASSADILLQGISGTGFSSEDH 120

Query: 91  RFLNVD-VETHQGDNASNLANAL-HHKRKSIVVVGDD-DLDHNKLNND---PNKSIHASN 136
           +FLN+D V+TH G    +  N L HHKRKS +V  DD D DH+   N    PNK I  SN
Sbjct: 121 KFLNMDIVQTHLGVGDEDDDNPLFHHKRKSSIVAADDHDHDHDHDQNQLIKPNKKIRTSN 180

BLAST of Lcy04g002720 vs. ExPASy TrEMBL
Match: A0A1S3BU96 (transcription factor bHLH85-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493599 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-09
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = 0

Query: 31  QFPCVGAA------DY----HMSMSGGAIEEKKMESVFSACN-DILLEEIN--GFCGED- 90
           QFPC+ AA      DY    HMSMS    + K +ES+FSA + DILL+ I+  GF  ED 
Sbjct: 67  QFPCIAAAAAAAYDDYYGHNHMSMSIIDEDNKNLESIFSASSADILLQGISGTGFSSEDH 126

Query: 91  RFLNVD-VETHQGDNASNLANAL-HHKRKSIVVVGDD-DLDHNKLNND---PNKSIHASN 136
           +FLN+D V+TH G    +  N L HHKRKS +V  DD D DH+   N    PNK I  SN
Sbjct: 127 KFLNMDIVQTHLGVGDEDDDNPLFHHKRKSSIVAADDHDHDHDHDQNQLIKPNKKIRTSN 186

BLAST of Lcy04g002720 vs. NCBI nr
Match: KAG7024298.1 (Transcription factor bHLH84 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-29
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 0

Query: 27  NAADQFPCVGAADYHMSMSGGAIEEKKMESVFSACNDILLEEINGFCGEDRFLNVDVETH 86
           NA DQFPC+ AAD++MSMS  AIEE KM+S+FSAC D+LL+EI+ F GEDR+LN+DV+T 
Sbjct: 57  NAIDQFPCIAAADHYMSMSNAAIEENKMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQ 116

Query: 87  QGD--NASNLANALHHKRKSIVVVGDDDLDHNKLNNDPNKSIHASNN 132
            G+  NA+N A A HHKRKSIVV  DDD  HNKLNN P K I  SNN
Sbjct: 117 IGNDHNATNSAKAFHHKRKSIVVADDDDHHHNKLNN-PTKKIRTSNN 162

BLAST of Lcy04g002720 vs. NCBI nr
Match: KAG6591418.1 (Transcription factor basic helix-loop-helix 85, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.3 bits (342), Expect = 2.2e-28
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 27  NAADQFPCVGAADYHMSMSGGAIEEKKMESVFSACNDILLEEINGFCGEDRFLNVDVETH 86
           NA DQFPC+ AAD++MSMS  AIEE KM+S+FSAC D+LL+EI+ F GEDR+LN+DV+T 
Sbjct: 57  NAIDQFPCIAAADHYMSMSNAAIEENKMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQ 116

Query: 87  QGD--NASNLANALHHKRKSIVVVGDDDLDHNKLNNDPNKSIHASNN 132
            G+  NA+N A A HHKRKSIVV  DD   HNKLNN P K I  SNN
Sbjct: 117 IGNDHNATNSAKAFHHKRKSIVVADDDHHHHNKLNN-PTKKIRTSNN 162

BLAST of Lcy04g002720 vs. NCBI nr
Match: XP_022977069.1 (transcription factor bHLH54-like [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 27  NAADQFPCVGAADYHMSMSGGAIEEKKMESVFSACNDILLEEINGFCGEDRFLNVDVETH 86
           NA DQFPC+ AAD++MSMS  AIEE +M+S+FSAC D+LL+EI+ F GEDR+LN+DV+T 
Sbjct: 57  NAIDQFPCIAAADHYMSMSNAAIEENEMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQ 116

Query: 87  QG--DNASNLANALHHKRKSIVVVGDDDLDHNKLNNDPNKSIHASNN 132
            G  +NA+N A A HHKRKSIVV  DD   HN LNN P K I  SNN
Sbjct: 117 IGNDNNATNSAKAFHHKRKSIVVADDDHHHHNNLNN-PTKKIRTSNN 162

BLAST of Lcy04g002720 vs. NCBI nr
Match: XP_022937063.1 (transcription factor bHLH139-like [Cucurbita moschata])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 27  NAADQFPCVGAADYHMSMSGGAIEEKKMESVFSACNDILLEEINGFCGEDRFLNVDVETH 86
           NA DQFPC+ AAD++MSMS  AIEE KM+S+FSAC D+LL+EI+ F GEDR+LN+DV+T 
Sbjct: 57  NAIDQFPCIAAADHYMSMSNAAIEENKMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQ 116

Query: 87  QGD--NASNLANALHHKRKSIVVVGDDDLDHNKLNNDPNKSIHASNN 132
            G+  NA+N A A HHKRKSI VV DDD  HN LNN P K I  SNN
Sbjct: 117 IGNDHNATNSAKAFHHKRKSI-VVADDDHHHNNLNN-PTKKIRTSNN 161

BLAST of Lcy04g002720 vs. NCBI nr
Match: XP_023536485.1 (transcription factor bHLH84-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.3 bits (329), Expect = 7.1e-27
Identity = 66/107 (61.68%), Postives = 80/107 (74.77%), Query Frame = 0

Query: 27  NAADQFPCVGAADYHMSMSGGAIEEKKMESVFSACNDILLEEINGFCGEDRFLNVDVETH 86
           NA DQFPC+ AAD++M MS  AI+E KM+S+FSAC D+LL+EI+ F GEDR+LN+DV+T 
Sbjct: 57  NAIDQFPCIAAADHYMPMSNAAIDENKMDSIFSACTDVLLQEISVFSGEDRYLNMDVQTQ 116

Query: 87  QGD--NASNLANALHHKRKSIVVVGDDDLDHNKLNNDPNKSIHASNN 132
            G+  NA+N A A HHKRKSIVV  DD   HN LNN P K I  SNN
Sbjct: 117 IGNDHNATNSAKAFHHKRKSIVVADDDHHHHNNLNN-PTKKIRTSNN 162

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IQF11.2e-2762.62transcription factor bHLH54-like OS=Cucurbita maxima OX=3661 GN=LOC111477249 PE=... [more]
A0A6J1FEZ91.2e-2764.49transcription factor bHLH139-like OS=Cucurbita moschata OX=3662 GN=LOC111443476 ... [more]
A0A0A0L5333.8e-1044.12BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G642470 PE=4 S... [more]
A0A5D3D9B71.1e-0946.40Transcription factor bHLH85-like isoform X1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BU961.1e-0946.40transcription factor bHLH85-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493... [more]
Match NameE-valueIdentityDescription
KAG7024298.13.4e-2965.42Transcription factor bHLH84 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6591418.12.2e-2864.49Transcription factor basic helix-loop-helix 85, partial [Cucurbita argyrosperma ... [more]
XP_022977069.12.4e-2762.62transcription factor bHLH54-like [Cucurbita maxima][more]
XP_022937063.12.4e-2764.49transcription factor bHLH139-like [Cucurbita moschata][more]
XP_023536485.17.1e-2761.68transcription factor bHLH84-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g002720.1Lcy04g002720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding