Lcy04g002390 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g002390
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 16908741 .. 16909088 (-)
RNA-Seq ExpressionLcy04g002390
SyntenyLcy04g002390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCGGAACGTCGTTCTTTCGTTTTCATCTCCTTTCTCATCCTTACCATGTGTTTTCCTTTCACACTCACAACAACTTCTAGAGTCATCCTCGCTTCAGTACCAAACCAAAAAGTTTTAAAAGCAACAACACCTTCTAATGCAACACCATTCAATGAATTATCATCTCAATACGTAACTAATGAGGCTCCAAGTTCTAATGATTTCAACACTTTAAAAGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTTTAAGTTCCAAGCCTCAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCATGTGCTAA

mRNA sequence

ATGACTTCGGAACGTCGTTCTTTCGTTTTCATCTCCTTTCTCATCCTTACCATGTGTTTTCCTTTCACACTCACAACAACTTCTAGAGTCATCCTCGCTTCAGTACCAAACCAAAAAGTTTTAAAAGCAACAACACCTTCTAATGCAACACCATTCAATGAATTATCATCTCAATACGTAACTAATGAGGCTCCAAGTTCTAATGATTTCAACACTTTAAAAGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTTTAAGTTCCAAGCCTCAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCATGTGCTAA

Coding sequence (CDS)

ATGACTTCGGAACGTCGTTCTTTCGTTTTCATCTCCTTTCTCATCCTTACCATGTGTTTTCCTTTCACACTCACAACAACTTCTAGAGTCATCCTCGCTTCAGTACCAAACCAAAAAGTTTTAAAAGCAACAACACCTTCTAATGCAACACCATTCAATGAATTATCATCTCAATACGTAACTAATGAGGCTCCAAGTTCTAATGATTTCAACACTTTAAAAGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTTTAAGTTCCAAGCCTCAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCATGTGCTAA

Protein sequence

MTSERRSFVFISFLILTMCFPFTLTTTSRVILASVPNQKVLKATTPSNATPFNELSSQYVTNEAPSSNDFNTLKVSEIASTSPQIDHSAILSSKPQGPIRWSAPNPIHNNNVPMC
Homology
BLAST of Lcy04g002390 vs. ExPASy TrEMBL
Match: A0A0A0L2F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.7e-04
Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 0

Query: 1   MTSERRSFVFI-SFLILTMCFPFTLTTTSRVILASVPNQKVLKATTPSNATPFNELSSQY 60
           MT     F+FI  F +  M  P TL  TSR IL   P       T  ++A  F + SS++
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEP------TTLTNDALSFVQRSSRH 60

Query: 61  V-TNEAPSSNDFNTLKVS----EIASTSPQIDHSAILSSKPQGPIRWSAPNPIHNN 111
           + T   P+S   N+LK+S    E  ST     HS + S KP+GPIRWS+P+P+ NN
Sbjct: 61  LATTTTPTSRRSNSLKLSKGRHEQTSTK---THSTLQSCKPKGPIRWSSPSPLRNN 107

BLAST of Lcy04g002390 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 0

Query: 11  ISFLILTMCFPFTLTTTSRVILASVPNQKVLKATTPSNATPFNELSSQYVTNEAPSSNDF 70
           I FL++ +  P T+  TSR +L                A    E   Q   ++ P+SNDF
Sbjct: 12  IFFLLIVISSPSTIIATSRHML----------------ALDTKESPPQPPMDKPPTSNDF 71

Query: 71  NTLKVSEIASTSPQIDHSAILSSKPQGPIRWSAPNPIHNNNVPMC 116
           +TL +       P +  SA+ S KP+GP+RWS+P+PI  NN+P+C
Sbjct: 72  DTLSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPI-RNNLPIC 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2F68.7e-0439.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6595583.11.6e-0435.24hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g002390.1Lcy04g002390.1mRNA