Lcy04g002350 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g002350
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 16461829 .. 16462169 (+)
RNA-Seq ExpressionLcy04g002350
SyntenyLcy04g002350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTGCAACGTCGTTCTTTCCTTTTCATCTCCTTTCTCCTCCTTACCATGTGTTTTCCTTTCACACTCACGGAAACTTCTAGAGTCATCCTCGCTTCAGTACCCAACCGGAAAGTTTTAAAAACAACAACACCTGTTAATGCAACACCATTCAATGAATTATCATCTCAACGGGTAACTAATGAGGCTCCAACTTCTAATGATTTCAACACTATAAACGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTCTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCAT

mRNA sequence

ATGACTTTGCAACGTCGTTCTTTCCTTTTCATCTCCTTTCTCCTCCTTACCATGTGTTTTCCTTTCACACTCACGGAAACTTCTAGAGTCATCCTCGCTTCAGTACCCAACCGGAAAGTTTTAAAAACAACAACACCTGTTAATGCAACACCATTCAATGAATTATCATCTCAACGGGTAACTAATGAGGCTCCAACTTCTAATGATTTCAACACTATAAACGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTCTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCAT

Coding sequence (CDS)

ATGACTTTGCAACGTCGTTCTTTCCTTTTCATCTCCTTTCTCCTCCTTACCATGTGTTTTCCTTTCACACTCACGGAAACTTCTAGAGTCATCCTCGCTTCAGTACCCAACCGGAAAGTTTTAAAAACAACAACACCTGTTAATGCAACACCATTCAATGAATTATCATCTCAACGGGTAACTAATGAGGCTCCAACTTCTAATGATTTCAACACTATAAACGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTCTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCAT

Protein sequence

MTLQRRSFLFISFLLLTMCFPFTLTETSRVILASVPNRKVLKTTTPVNATPFNELSSQRVTNEAPTSNDFNTINVSEIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNNNVP
Homology
BLAST of Lcy04g002350 vs. ExPASy TrEMBL
Match: A0A0A0L2F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.5e-05
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 0

Query: 1   MTLQRRSFLFI-SFLLLTMCFPFTLTETSRVILASVPNRKVLKTTTPVNATPFNELSSQR 60
           MT +   FLFI  F L  M  P TL  TSR IL   P      TT   +A  F + SS+ 
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEP------TTLTNDALSFVQRSSRH 60

Query: 61  V-TNEAPTSNDFNTINVS----EIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNN 111
           + T   PTS   N++ +S    E  ST     HS + SCKPKGPIRWS+P+P+ NN
Sbjct: 61  LATTTTPTSRRSNSLKLSKGRHEQTSTK---THSTLQSCKPKGPIRWSSPSPLRNN 107

BLAST of Lcy04g002350 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-06
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query: 11  ISFLLLTMCFPFTLTETSRVILASVPNRKVLKTTTPVNATPFNELSSQRVTNEAPTSNDF 70
           I FLL+ +  P T+  TSR +LA       L T          E   Q   ++ PTSNDF
Sbjct: 12  IFFLLIVISSPSTIIATSRHMLA-------LDT---------KESPPQPPMDKPPTSNDF 71

Query: 71  NTINVSEIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNN 111
           +T+++       P +  SA+ SCKPKGP+RWS+P+PI NN
Sbjct: 72  DTLSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPIRNN 95

BLAST of Lcy04g002350 vs. NCBI nr
Match: KGN54792.1 (hypothetical protein Csa_012277 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 7.2e-05
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 0

Query: 1   MTLQRRSFLFI-SFLLLTMCFPFTLTETSRVILASVPNRKVLKTTTPVNATPFNELSSQR 60
           MT +   FLFI  F L  M  P TL  TSR IL   P      TT   +A  F + SS+ 
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEP------TTLTNDALSFVQRSSRH 60

Query: 61  V-TNEAPTSNDFNTINVS----EIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNN 111
           + T   PTS   N++ +S    E  ST     HS + SCKPKGPIRWS+P+P+ NN
Sbjct: 61  LATTTTPTSRRSNSLKLSKGRHEQTSTK---THSTLQSCKPKGPIRWSSPSPLRNN 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2F63.5e-0543.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6595583.12.2e-0640.00hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN54792.17.2e-0543.10hypothetical protein Csa_012277 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g002350.1Lcy04g002350.1mRNA