Lcy04g002210 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g002210
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Transposon protein, putative, CACTA, En/Spm sub-class
Location	Chr04: 13599237 .. 13599668 (-)
RNA-Seq Expression	Lcy04g002210
Synteny	Lcy04g002210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGTTGAGAATGTGGCAAGCTAAACACGTGCGTCCTCAATATCGATCTACTATTAGTTGGAAACTAGTGAAGGTAAATTCACATTCATGATATTATACATTGAGCAAATTTACATTGAAATCTTGTATGCATACTCAATTATGTTCTTTTTCATTGTAGTGCCCTCGTCAATTAGCTTCGGTAGAGTGCATGTATTTTGTGCAAAAATATATTTGAGAAATAATGCACAACTCTAATTCCCCTATAACTAAACTTGTAAGTACTATTACTATCCTTACGCTTGATTATAATTTATGTTTCTTGTCATTCTTATATCATATAATTGTTTTTTTTTTTTTTTGTTGTAGTTTAACATAAAGAGTGAATTTACACTAGACGAAATCGACGAGGTTCGTATAGAATGGAAAAATTTTGTTGGAGGATTTGTTTAG

mRNA sequence

GGGGTTGAGAATGTGGCAAGCTAAACACGTGCGTCCTCAATATCGATCTACTATTAGTTGGAAACTAGTGAAGTTTAACATAAAGAGTGAATTTACACTAGACGAAATCGACGAGGTTCGTATAGAATGGAAAAATTTTGTTGGAGGATTTGTTTAG

Coding sequence (CDS)

GGGGTTGAGAATGTGGCAAGCTAAACACGTGCGTCCTCAATATCGATCTACTATTAGTTGGAAACTAGTGAAGTTTAACATAAAGAGTGAATTTACACTAGACGAAATCGACGAGGTTCGTATAGAATGGAAAAATTTTGTTGGAGGATTTGTTTAG

Protein sequence

GLRMWQAKHVRPQYRSTISWKLVKFNIKSEFTLDEIDEVRIEWKNFVGGFV

Homology

[Close]

BLAST of Lcy04g002210 vs. ExPASy TrEMBL
Match: A0A5D3C4L5 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00510 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1   GLRMWQAKHVRPQYRSTISWKLVKFNIKSEFTLDEIDEVRIEWKNFVGGFV 52
           GL+ WQAKH   +YRST  W+ VKFN KS +  +EIDE+R +W  FV  FV
Sbjct: 336 GLKTWQAKHDLQRYRSTPKWRPVKFNTKSAYRQEEIDEIRTKWAAFVSRFV 386

[Close]

BLAST of Lcy04g002210 vs. ExPASy TrEMBL
Match: A0A5A7UZ87 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00530 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-07
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1   GLRMWQAKHVRPQYRSTISWKLVKFNIKSEFTLDEIDEVRIEWKNFVGGFV 52
           GL+ WQAKH   +YRST  W+ VKFN KS +  +EIDE+R +W  FV  FV
Sbjct: 345 GLKTWQAKHDLQRYRSTPKWRPVKFNTKSAYRQEEIDEIRTKWAAFVSRFV 395

[Close]

BLAST of Lcy04g002210 vs. ExPASy TrEMBL
Match: A0A5A7T5X2 (Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00840 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-06
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 1   GLRMWQAKHVRPQYRSTISWKLVKFNIKSEFTLDEIDEVRIEWKNFVGGFV 52
           GL+ WQ KH   +YRST  W+ VKFN K+ +  +EIDE+R +W  FV  FV
Sbjct: 215 GLKTWQVKHDLQRYRSTPKWRPVKFNTKNAYRQEEIDEIRTKWAAFVSRFV 265

[Close]

BLAST of Lcy04g002210 vs. ExPASy TrEMBL
Match: A0A0A0KV46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056560 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.2e-06
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 2  LRMWQAKHVRPQYRSTISWKLVKFNIKSEFTLDEIDEVRIEWKNFVGGFV 52
          L+ WQ +H   QYRS I WK +KFN    +  +EID VR+EW  FVG FV
Sbjct: 20 LKHWQFEHSPKQYRSRIRWKPIKFNTIHTYEQEEIDAVRVEWAEFVGRFV 69

[Close]

BLAST of Lcy04g002210 vs. ExPASy TrEMBL
Match: A0A6J1DSK5 (uncharacterized protein LOC111024004 OS=Momordica charantia OX=3673 GN=LOC111024004 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-04
Identity = 33/82 (40.24%), Postives = 37/82 (45.12%), Query Frame = 0


Query: 2   LRMWQAKHVRPQYRSTISWKLVK--------------------------------FNIKS 52
           L+MWQAKH   Q RST  WK VK                                FN KS
Sbjct: 49  LKMWQAKHSTQQSRSTTIWKPVKCPRQLGSIECGYYLQMYIREIVRNPHAPITELFNTKS 108

[Close]

BLAST of Lcy04g002210 vs. NCBI nr
Match: KAA0061222.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 5.9e-07
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1   GLRMWQAKHVRPQYRSTISWKLVKFNIKSEFTLDEIDEVRIEWKNFVGGFV 52
           GL+ WQAKH   +YRST  W+ VKFN KS +  +EIDE+R +W  FV  FV
Sbjct: 345 GLKTWQAKHDLQRYRSTPKWRPVKFNTKSAYRQEEIDEIRTKWAAFVSRFV 395

[Close]

BLAST of Lcy04g002210 vs. NCBI nr
Match: TYK06270.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 5.9e-07
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 1   GLRMWQAKHVRPQYRSTISWKLVKFNIKSEFTLDEIDEVRIEWKNFVGGFV 52
           GL+ WQAKH   +YRST  W+ VKFN KS +  +EIDE+R +W  FV  FV
Sbjct: 336 GLKTWQAKHDLQRYRSTPKWRPVKFNTKSAYRQEEIDEIRTKWAAFVSRFV 386

[Close]

BLAST of Lcy04g002210 vs. NCBI nr
Match: KAA0038258.1 (transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa] >TYK30657.1 transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-06
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 0


Query: 1   GLRMWQAKHVRPQYRSTISWKLVKFNIKSEFTLDEIDEVRIEWKNFVGGFV 52
           GL+ WQ KH   +YRST  W+ VKFN K+ +  +EIDE+R +W  FV  FV
Sbjct: 215 GLKTWQVKHDLQRYRSTPKWRPVKFNTKNAYRQEEIDEIRTKWAAFVSRFV 265

[Close]

BLAST of Lcy04g002210 vs. NCBI nr
Match: XP_022157245.1 (uncharacterized protein LOC111024004 [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 4.7e-04
Identity = 33/82 (40.24%), Postives = 37/82 (45.12%), Query Frame = 0


Query: 2   LRMWQAKHVRPQYRSTISWKLVK--------------------------------FNIKS 52
           L+MWQAKH   Q RST  WK VK                                FN KS
Sbjct: 49  LKMWQAKHSTQQSRSTTIWKPVKCPRQLGSIECGYYLQMYIREIVRNPHAPITELFNTKS 108

The following BLAST results are available for this feature:

BLAST of Lcy04g002210 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g002210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4L5	2.9e-07	54.90	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00510 PE...	[more]
A0A5A7UZ87	2.9e-07	54.90	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00530 PE...	[more]
A0A5A7T5X2	1.9e-06	50.98	Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuw...	[more]
A0A0A0KV46	9.2e-06	52.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056560 PE=4 SV=1	[more]
A0A6J1DSK5	2.3e-04	40.24	uncharacterized protein LOC111024004 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Lcy04g002210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061222.1	5.9e-07	54.90	transposase [Cucumis melo var. makuwa]	[more]
TYK06270.1	5.9e-07	54.90	transposase [Cucumis melo var. makuwa]	[more]
KAA0038258.1	3.8e-06	50.98	transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa]...	[more]
XP_022157245.1	4.7e-04	40.24	uncharacterized protein LOC111024004 [Momordica charantia]	[more]

BLAST of Lcy04g002210 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g002210.1	Lcy04g002210.1	mRNA