Lcy04g002140 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g002140
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr04: 12849814 .. 12855384 (+)
RNA-Seq ExpressionLcy04g002140
SyntenyLcy04g002140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATTTATAGTATCTTCCCACCCAGAAGAGCGTACTAGAATTGATATTAGAAGTCAAAATTCTAGACAAAGCAGGAAATAAAAGATCATCAAAAAAAAAAAATTCAAAACAGAAGTCCAAAAATCACTATTCAATTCCCTTTCGACACATAGGCGTCGAAATTTTACTCATTTAGAAAAAGCGATTAACATATCTAGAAAATGGAAACCGAAAAAAGAAAAACACGAACAAGTTGATATACTACAGCTGTAACAAGTTGATATACCTAAACCGCCTCGAATACGTGCTGGTTTGTGTTCGAATTAATTCCAACAACCAAGTTCTCAAGCTGACGAGTTATGAGTAACTCAATTTAAGGTCGTTCGGGTTATGGGCATTAGTCAAACACCAATTTCGAGCCCAAACGCTCACTGGTTGGCTTTCAAAGAACATTTATAGAAGCCTTCAGTAAATGGGTAATCTAAAATTGAATCCGAATAAGCATGGGTTCAAGCTAAACTTACCGAAAGCGTGAACAATGTCATTGGAGGCTGGAAATCGCGTATCTTGCTATATAGAAGCTGCTCGCGTGGGACTTGCAGTGTAGGTGTCGATTTCCGGCGAAGAACGACAGAGAGGGAGGGGCGGCGCTGTGTGGGTCTTCGTTTTCCGGCAAGAACTGACGGTGGCGCGGGAGGAAGAAGAGAAAACGAGGAAGGCGGCGTGGGTTTCTTTGCTTTTGGCCGAAGAGAAAAGAGAGACGAGGGAGAGGGATGAAGGCGGCGGCGAGGAGCGGGGCAACGGCGCGAGAGGAAAAGAGAGAGGGACGGTTGTGGCCGCGGGTCTGCTGCACGAAGAAAAGAAGCGAGAAAAGGGGCCGGACGCACGCACGAAGGAGAGAGGGAGAAAGAGAGGAAAATGGCGAGGCTTTCTTGATTTCTTCTTTTCTTTTTTTTTTTTTTAAAAAAAATCCTTTTTTAAAAAAAAAAATGTAAAAAAAATCTTAACTCCATTTTTTTTTTTGAAACAAAAAATCTTAACTCCATTGCACGGAGTTATTTTGAAAAAAAATACATTTAAAAAAAAAAATGGCAAAAGCACAGTCTTCTGAAAAAAATTGGAGAAAACATGCATTTTTTTTCCTTATTTGAATTCGTGGCTTCAGGATTCAACTTTTTAAGTTTTTTTTTTTTTTTTGTAATTTCAAATTTAATTTTCAACCATGTGAATTAATGACGGCTAATAACCGACATTGGGTATAATATTTTTCGGAAAAGTTCCGTCAAACTCCGAATTTTACGGCGCCTTTTTTCAAATTACCTTTTAATGACGGTTTGGACCCGTCATTGAACGTTAGCTTTAATGTCAGTTAGAAACCGTGATCTTTGTTAACCATCTTTAATGACGGTTAATAACTGACATTGTTGATATTATTTTCCGAAAAAGTTCCGTCAAACTCCGAATTTTACGGCGCCTTTTTAAAAACTACTTGGTAATGATGGTTTTGACCCGTCATTGAAAGTTATCTTTAATGTCGGTTTAGAACCGTGATCTTTGTGAAATATTTTCGCATCATTTTTAAAACACTTATAATGACGGTTTTAAACCGACATGGAAGGTTTTGTACTCGCAGATTTTTTTTCTCAACTTTACATGACGAACATAAACCATAATTGTACGATGGTCTTTAATAACAGTCCTAAACCGTTATCGTAGCCCAAATTTCCGAAAATTTTCGTTTTTTTTTTAAAAAGTGGCATCTTTTTAGTAATCCGTTATCTTTGAGTCAATCCGTCATTGTTTAAAAAATACAATCCGACATCGTAGCCCCAAATTGTTGTAGCGTTGTTGATGGACCAGTGCATCTAGTCAGACACATCCATCTCAATAGTTGAGAGTGTCTCGATGTAGTGGGAGGGTTGTTTTATAACCTAAACGTTACATGGGCTTGATTGAAGCCTAGGTCATCATACCTGATGATGGCATAGAGGATTCATTGTCTTTTAGAAAGAAAATGAATGATGTTGACAACGATCAGATGATTAAAGCTATGGACCTAGAAAGGAAGTCTTTTGTATCTCACTTCCATCTGGGATCTTGTAGATCTGCTTGATGAGTAACACCTATTAGTTACAAGTGGATTTACAAGAGGAAACGAGACATTCATGTCTTGACCAGAAGAGTTCATATAACAAGATCAAAAGCAAAAGGGTTTGCAAGCTTAAGTGATCCATTCATGGATTGACCTAAGCATTTCGATCTTGAAATATAAGATTTGATATAGTGACCAAATCTTTTGGCTTTAATGAAAACATTGATGAGTCTTGTGTTTACAAGTAATCATCAATAGTGTAGTAGCTTACTTAGTGTTGTATATGATTGATATCCTAATCATTGGGAATGATGTAGGTTATCTTACTGACATTAAAAGAGGCTAGTAGCTCATTTCCAAATGAAAATCTGGGAGAAGCTGAGTTGGCCTTGTCTCAAGTGTCTTATATCTACAAGATGTTAGTTAGATATAAGATGCAGAATTCCAAGAAGGGTTCACTACCTTTTAGGCATGAAATTCTTTTGTCTAAGGAACTGTGTTCTGAGACACCTCAAGATGTTGAGGACTTGAGACATAAGCCCTATGCAGTAGAGATTGTCAGTAAGTATCAATCTAATACAAGATTTGATCACTAAAAAACTGTTAAGAATATCCTCAAGTATCTGAGGAGAAAGAGGAATTGTATGCTCGTGTATGAGACTAAGGACTTCATCCTTACAGGATACACTGACACAGATTTTAAGACTGATAAGGATTTGAGGAAATCTACATCAATATCTGTGGTCACTCTTTATGATGGAGCTATAGTATGGCATAGTTACAGTCTTGACCGTATAGGCCGAAAACATAGCTGCTTGTGATGCAGCGATAGAGACTGTATGACTTAGGAAGTTCTTGATTGATTTGGAATGTGTTCCAAATGTGAACTTGCCCATCACACTTTATAGTGATATAGTGGTGTTGTGGCAAATTCAAAAGAACATCGCAGCCCAAGACAAGCAGGCACATTAAATTGAATGAAATATTGCTGGTTCATTTACAAAGACTCTCTCGGCTAAAGTGTTTGAGGGTCATCTAGAAGGTCTAGATCTACGAGTAATGTACAAAGATGAAATCTAGGGTAAGTGGGAGAAATGTAATGGGTATAGTGACACCATTATGTAATGGGTATAGTATAGTGATACCATTATGTAATGGGTATAGTAATGCCCTAGTTTATTGTATTTGTACATTGTATATGTTTTATACATGTATTTATACACCTGCTGCTGTAGAGATTATTGTACATCCCACAAAACTAGAGTTTTAGTTCAAGTGGGAGTTTGTTGGGTTTTATGCCATAAAACTCGTAGATAGTGAATGTAAACAAATTGTATACTTGTTTCAATAAAGTGTTTTTGAGTTTCTACAATAAAGTATTATTGTTAAATATTGCACAATTTGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTACATGTGACTTGAACTAGTATGTGGGGACATACGGGGATCAGTGTTCAAGTAACAACCTAAAAGGTCTATAGTACAGGGATAAGGCTGGGTACCTTTTCCTGGTAACACTATGTGATGCGGCCCGCTTTGTATTCGATACAGACATATTGATCCAAGGCGTCCATGTAAGAGACATGCGAGCGGGGTATCCGATGCAATGAGTTTGCATAAGACCGGACCATGAAATAGTAAACCACTAGATGTAACACCGTTAACTAGTTAGGTTACTGTTTCAATAGGATGACCTAGGTAACTCAGTCTTAATCCTGAGTGTGTCATGAACTCCTTCTCACGAGGGATTGTCCTTTGATTAGTATGGGTGAGAGTGGCCTGCACGCCGACTCAATAAGCCTACCTTCTTGGGGAGAAGTAGATGAGTGTTCCCTTAAGTGGTGACTCCGGGACTTGAACAAAGGGATCCCGCCCTCTCACTGGCCCGAGAGGGACTTTCTGTTTCATGGTTGGACCATAAATAGGTTGTTCATTAGAGGAGCGTTGGTACTTAAGGAGACAGATGTAACAGAGGGGTAAAACGGTAATTTGACCCAGCCGTGATTACAAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACATAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTTAGTGGAATGACCCACAGTTAATGAATATTGGTTAACCTGATTAATGAGTTTAATCGGTTAACCTCATATCATTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCCCTGCTAGCTCGTAAAGAGTAATTAGGAACAATTATATCTTGAGAGAATTTGAATATAATTCAAATTCATATTGGGAATTAAGTTAATTGTATGAGATACAAATTAATATAATGTATAATGATACATTAAAATGTAAAGTCTAATTTGAAGTTAAACTTTATTATTATGAGAGAAATAAATATTTGAAGAAGTTTAAATATTAATATGAATTTGATTCATATTAAATTTATAGGATATAAGAGAATTGGAAGGAGTTCCAATTTTAATATGAATTTGATTCATATTATAGAATTAATTAATTGAAGGCTTGAAATTAAATATATGATATTTAATTGGGTAATTAATTAATTAACTAATAGAATGTCTGAATATTTAATTGGGTGATTAATTAATTAGAAATTAATCAATTATGGAAATGATTAATCACTTATGGAAGTAATTAATCATTTATGGAAATGATTTAATCACTTATGGAAGTGATCAATCATTTATGAAAAAGATTAATTAATTATGAAATTGATTGGTTATGGAATTGATTAATTATGGAAAAGATTATTGGTTGCAGTGACCTGTTGGTCCATTTGGAATGACAGAAACCGATTAATCCATGGTGATCAAATTCCTGGCGTCGAGTTTAAAAGCCAATGGATCAACCATTATTTGGAGAAATACTTACAAGCTAATTCAAAGCCCAACCCTAGCTCCATTTCAAATCCCAGCTCCGTTTGTTCTCAAATCACCTCTAGGAACGATTGTTGGAAGCCGCCTCCATCGGGTTGGTGGAAAGTTAACGTCGACGCGGCCTGGGTTCCTTCTATTCCGGCGACTGGCATAGGAGTGATATGTCGAAGCTCCGATGGTCAAGCTATTGCAGCTTCTTCAGGTTCTCTGGATGCAGATTTGGGAGCTCCTCTTGCGGAATTGAGGGCTATTTTCGAAGGGATGATTTTTGCTAAATCTATGGGCTGTCTCCAATTGGAAGTGGAATCAGATAATAAGCTTGCTGTGGATTTTATTACTAAAAAGAGCGCATTATGGTCAGAAGTGGAAAGCTTAGTCGAATCTATTTGGGCTTTAATTCCAGTGTTTAGGGAGGTGGTCTTTCTCTATAATTCTAGAAAATGTAATTCTGTTGCGGACAAATTAGCTAAATATGCCAGAGAATCTGGTTTGAGTGAAATCTGGGTGGGAAATTTCCCAGATTGGTTATGTACTTCGGTCGAATTTGACCGCTCTCGTTTTGCCCTTGTGGCGTTATAA

mRNA sequence

ATGGTGTCGATTTCCGGCGAAGAACGACAGAGAGGGAGGGGCGGCGCTGTGTGGGTCTTCGTTTTCCGGCAAGAACTGACGGTGGCGCGGGAGGAAGAAGAGAAAACGAGGAAGGCGGCGTGGGTTTCTTTGCTTTTGGCCGAAGAGAAAAGAGAGACGAGGGAGAGGGATGAAGGCGGCGGCGAGGAGCGGGGCAACGGCGCGAGAGGAAAAGAGAGAGGGACGGTTGTGGCCGCGGTGACCTGTTGGTCCATTTGGAATGACAGAAACCGATTAATCCATGGTGATCAAATTCCTGGCGTCGAGTTTAAAAGCCAATGGATCAACCATTATTTGGAGAAATACTTACAAGCTAATTCAAAGCCCAACCCTAGCTCCATTTCAAATCCCAGCTCCGTTTGTTCTCAAATCACCTCTAGGAACGATTGTTGGAAGCCGCCTCCATCGGGTTGGTGGAAAGTTAACGTCGACGCGGCCTGGGTTCCTTCTATTCCGGCGACTGGCATAGGAGTGATATGTCGAAGCTCCGATGGTCAAGCTATTGCAGCTTCTTCAGGTTCTCTGGATGCAGATTTGGGAGCTCCTCTTGCGGAATTGAGGGCTATTTTCGAAGGGATGATTTTTGCTAAATCTATGGGCTGTCTCCAATTGGAAGTGGAATCAGATAATAAGCTTGCTGTGGATTTTATTACTAAAAAGAGCGCATTATGGTCAGAAGTGGAAAGCTTAGTCGAATCTATTTGGGCTTTAATTCCAGTGTTTAGGGAGGTGGTCTTTCTCTATAATTCTAGAAAATGTAATTCTGTTGCGGACAAATTAGCTAAATATGCCAGAGAATCTGGTTTGAGTGAAATCTGGGTGGGAAATTTCCCAGATTGGTTATGTACTTCGGTCGAATTTGACCGCTCTCGTTTTGCCCTTGTGGCGTTATAA

Coding sequence (CDS)

ATGGTGTCGATTTCCGGCGAAGAACGACAGAGAGGGAGGGGCGGCGCTGTGTGGGTCTTCGTTTTCCGGCAAGAACTGACGGTGGCGCGGGAGGAAGAAGAGAAAACGAGGAAGGCGGCGTGGGTTTCTTTGCTTTTGGCCGAAGAGAAAAGAGAGACGAGGGAGAGGGATGAAGGCGGCGGCGAGGAGCGGGGCAACGGCGCGAGAGGAAAAGAGAGAGGGACGGTTGTGGCCGCGGTGACCTGTTGGTCCATTTGGAATGACAGAAACCGATTAATCCATGGTGATCAAATTCCTGGCGTCGAGTTTAAAAGCCAATGGATCAACCATTATTTGGAGAAATACTTACAAGCTAATTCAAAGCCCAACCCTAGCTCCATTTCAAATCCCAGCTCCGTTTGTTCTCAAATCACCTCTAGGAACGATTGTTGGAAGCCGCCTCCATCGGGTTGGTGGAAAGTTAACGTCGACGCGGCCTGGGTTCCTTCTATTCCGGCGACTGGCATAGGAGTGATATGTCGAAGCTCCGATGGTCAAGCTATTGCAGCTTCTTCAGGTTCTCTGGATGCAGATTTGGGAGCTCCTCTTGCGGAATTGAGGGCTATTTTCGAAGGGATGATTTTTGCTAAATCTATGGGCTGTCTCCAATTGGAAGTGGAATCAGATAATAAGCTTGCTGTGGATTTTATTACTAAAAAGAGCGCATTATGGTCAGAAGTGGAAAGCTTAGTCGAATCTATTTGGGCTTTAATTCCAGTGTTTAGGGAGGTGGTCTTTCTCTATAATTCTAGAAAATGTAATTCTGTTGCGGACAAATTAGCTAAATATGCCAGAGAATCTGGTTTGAGTGAAATCTGGGTGGGAAATTTCCCAGATTGGTTATGTACTTCGGTCGAATTTGACCGCTCTCGTTTTGCCCTTGTGGCGTTATAA

Protein sequence

MVSISGEERQRGRGGAVWVFVFRQELTVAREEEEKTRKAAWVSLLLAEEKRETRERDEGGGEERGNGARGKERGTVVAAVTCWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQANSKPNPSSISNPSSVCSQITSRNDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADLGAPLAELRAIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVESIWALIPVFREVVFLYNSRKCNSVADKLAKYARESGLSEIWVGNFPDWLCTSVEFDRSRFALVAL
Homology
BLAST of Lcy04g002140 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-28
Identity = 91/236 (38.56%), Postives = 125/236 (52.97%), Query Frame = 0

Query: 77   VAAVTCWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQAN-SKPNPSSISNPSSVCS 136
            +AA+T W IWNDRN LIHG Q+  VEFK +W+  +L+ + QA  S  +P + SN   V  
Sbjct: 1233 LAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQ 1292

Query: 137  QITSRNDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADLGAP 196
                    W+P  S   K+N DAA   +  +T  G I R S    +AA+S  +   L   
Sbjct: 1293 Y-------WRPSSSVSLKLNTDAACRGA--STSFGCIIRDSSCSLVAATSIRVPFPLSPL 1352

Query: 197  LAELRAIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVESIWALIPVFR 256
            LAE+R I EG+ FA +     LEVESD+ LA+  I  +     + ++ V  I AL   F 
Sbjct: 1353 LAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFA 1412

Query: 257  EVVFLYNSRKCNSVADKLAKYARES-GLSEIWVGNFPDWLCTSVEFD-RSRFALVA 310
             + F ++SR+CN  A  LAK+   S   +  W+ NFP WL   V+ D  S FA VA
Sbjct: 1413 FISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNFPTWLLDLVQRDFPSNFAHVA 1459

BLAST of Lcy04g002140 vs. ExPASy TrEMBL
Match: A0A7N2QY29 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-18
Identity = 70/225 (31.11%), Postives = 106/225 (47.11%), Query Frame = 0

Query: 82  CWSIWNDRNRLIH-GDQIPGVEFKSQWINHYLEKYLQANSKPNPSSISNPSSVCSQITSR 141
           CW IW  RN + H G + PG       +   LE Y  AN KP+ SS SN  ++       
Sbjct: 102 CWGIWKSRNEVWHGGKKRPGSIIVINALT-LLEDYHFANVKPSQSS-SNTQNIA------ 161

Query: 142 NDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADLGAPLAELR 201
               KPPP  ++KVNVD A       + +GVI R  DG  +AA    LD  LG    E +
Sbjct: 162 --ICKPPPPSYFKVNVDGALFAKSKQSDVGVIMRDEDGNVVAAMCRKLDLPLGVLETEAK 221

Query: 202 AIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVESIWALIPVFREVVFL 261
           A+  GM FA+ +G   +  E D++L ++ +       S V ++++ +      FR   FL
Sbjct: 222 ALEIGMTFAEEVGLRDMVFEGDSQLIINAVHGTGEAVSSVLNIIQGVLRKAQCFRTFDFL 281

Query: 262 YNSRKCNSVADKLAKYARESGLSEIWVGNFPDWLCTSVEFDRSRF 306
           +  R+ N  A  LA++A++     +W+   P  +  +   D S F
Sbjct: 282 HTKRQGNVSAHLLAQHAQKVESLAVWLEECPSQVAHACAKDISLF 316

BLAST of Lcy04g002140 vs. ExPASy TrEMBL
Match: A0A6P5RZ31 (uncharacterized protein LOC110751579 OS=Prunus avium OX=42229 GN=LOC110751579 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-17
Identity = 68/231 (29.44%), Postives = 108/231 (46.75%), Query Frame = 0

Query: 80  VTCWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQANS---KPNPSSISNPSSVCSQ 139
           V  W IW D+N  +HG +    +      +    +++ ANS   + +P S ++       
Sbjct: 27  VLSWLIWLDQNARMHGQKGRHPDDLYAIAHRLSVEFIFANSVHVRTHPPSSTH------- 86

Query: 140 ITSRNDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADLGAPL 199
                  W PPP G  K+NVD A   S+   G+G + R+  G  + A S  +     A +
Sbjct: 87  -------WCPPPPGKLKLNVDGACSTSVWKRGLGAVVRNVHGDLMGAISVPITGCFSAKV 146

Query: 200 AELRAIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVESIWALIPVFRE 259
            EL AI EG+ F    G   L VE+D K A++ I   +  +     ++  I  L   F  
Sbjct: 147 TELLAIREGLQFTWETGYDSLVVETDAKNAINDIISGTEAFGVAGGIINDIHMLSRNFDS 206

Query: 260 VVFLYNSRKCNSVADKLAKYARESGLSEIWVGNFPDWLCTSVEFDRSRFAL 308
           + F+++ R CN+VAD+LAK+A  S   ++W+   P WL   ++ D  R  L
Sbjct: 207 LSFVFSPRLCNTVADRLAKFALGSVSIDVWLEEGPPWLNVFLQADADRLEL 243

BLAST of Lcy04g002140 vs. ExPASy TrEMBL
Match: A0A803P623 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-17
Identity = 68/213 (31.92%), Postives = 104/213 (48.83%), Query Frame = 0

Query: 81   TCWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQANSKPNPSSISNPSSVCSQITSR 140
            T W IW++RN+++H  +       + +   YL+ Y  A  K  P + S  S V S  T+ 
Sbjct: 1241 TLWCIWSERNQVVHSKKSRSASALAAFSLQYLDNYRAAQLKYRPPATS--SQVPSPSTAP 1300

Query: 141  NDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADLGAPLAELR 200
            +  W+PPP G  K+N+DAA+  +    G+G + R+  GQ IAA S  +  +  +   E +
Sbjct: 1301 SAPWQPPPMGTLKLNIDAAFDKTSSKIGVGAVIRNYVGQVIAALSMPIVGNFASHEMEAK 1360

Query: 201  AIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVESIWALIPVFREVVFL 260
            A+F G+ +          VE+D  L  + +   +A       L+  I  L+  F   +  
Sbjct: 1361 AMFHGINWVLQQQLSISIVETDALLVSNALKSPAAGILAFSDLIMDISYLLSFFPNTIVT 1420

Query: 261  YNSRKCNSVADKLAKYARESGLSEI--WVGNFP 292
            +  R  NSVAD LAK+A   GL EI  W  NFP
Sbjct: 1421 HVKRNANSVADSLAKFA--LGLDEICSWWENFP 1449

BLAST of Lcy04g002140 vs. ExPASy TrEMBL
Match: A0A6P5S7Q3 (uncharacterized protein LOC110753261 OS=Prunus avium OX=42229 GN=LOC110753261 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-17
Identity = 63/221 (28.51%), Postives = 106/221 (47.96%), Query Frame = 0

Query: 82  CWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQANSKPNPSSISNPSSVCSQITSRN 141
           CW++W +RN+++       +E +S   N    + +    +        P      I  + 
Sbjct: 8   CWNLWQNRNKVV-------IEGRSSAQNVIFNRAIFLADEYESLVKGEP----KLIVEKP 67

Query: 142 DCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADLGAPLAELRA 201
             W PPP G +K+NVDAA++P    +GIG + R+  G+ +AA +  L     +  AE+ A
Sbjct: 68  SKWSPPPVGRYKLNVDAAFIPETGVSGIGAVVRNDKGEVMAAMALPLANATSSKHAEIMA 127

Query: 202 IFEGMIFAKSMGCLQLEVESDNKLAVDFITK-KSALWSEVESLVESIWALIPVFREVVFL 261
           +  GM FA+  G     +ESD++  V+ + K +   W+    L++ I   +  F EV   
Sbjct: 128 LQFGMNFARDAGFSSFLMESDSQGVVNDVKKDEEESWASDGHLIDDIKRSLQHFEEVTIS 187

Query: 262 YNSRKCNSVADKLAKYARESGLSEIWVGNFPDWLCTSVEFD 302
           ++ R+CN VA  LA++A        W+   P WL + V  D
Sbjct: 188 FSPRRCNQVAHFLARHALNCDNMVTWIEEVPFWLDSVVNDD 217

BLAST of Lcy04g002140 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 137.1 bits (344), Expect = 2.6e-28
Identity = 91/236 (38.56%), Postives = 125/236 (52.97%), Query Frame = 0

Query: 77   VAAVTCWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQAN-SKPNPSSISNPSSVCS 136
            +AA+T W IWNDRN LIHG Q+  VEFK +W+  +L+ + QA  S  +P + SN   V  
Sbjct: 1233 LAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTPFLDSHSQAQMSNYSPRTQSNHRPVVQ 1292

Query: 137  QITSRNDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADLGAP 196
                    W+P  S   K+N DAA   +  +T  G I R S    +AA+S  +   L   
Sbjct: 1293 Y-------WRPSSSVSLKLNTDAACRGA--STSFGCIIRDSSCSLVAATSIRVPFPLSPL 1352

Query: 197  LAELRAIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVESIWALIPVFR 256
            LAE+R I EG+ FA +     LEVESD+ LA+  I  +     + ++ V  I AL   F 
Sbjct: 1353 LAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRNEIHTRGDEQNWVMEIQALTCCFA 1412

Query: 257  EVVFLYNSRKCNSVADKLAKYARES-GLSEIWVGNFPDWLCTSVEFD-RSRFALVA 310
             + F ++SR+CN  A  LAK+   S   +  W+ NFP WL   V+ D  S FA VA
Sbjct: 1413 FISFSHSSRQCNRAAHGLAKWGITSPSATYAWLFNFPTWLLDLVQRDFPSNFAHVA 1459

BLAST of Lcy04g002140 vs. NCBI nr
Match: XP_023891465.1 (uncharacterized protein LOC112003484 [Quercus suber])

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-19
Identity = 68/238 (28.57%), Postives = 111/238 (46.64%), Query Frame = 0

Query: 76  VVAAVTCWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQAN---SKPNPSSISNPSS 135
           V+ AVT WS+WN+RN +IHG Q  G E   +++   +E+    N    + +PSS      
Sbjct: 83  VLFAVTAWSLWNNRNSVIHGGQSKGKEGFIKFVAMNVEETKGENVTQRRAHPSSTQQ--- 142

Query: 136 VCSQITSRNDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADL 195
                      W P   GW+KVN D A      + GIGV+ R+  GQ +      L   L
Sbjct: 143 -----------WSPLKQGWYKVNTDGAIFRETGSWGIGVVVRNEKGQIMGTLCKRLGLSL 202

Query: 196 GAPLAELRAIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVESIWALIP 255
           GA     +A+ EG  FA+ +   Q+ +E D+++ V  +  +  + S V+ ++E     + 
Sbjct: 203 GALEVGAKAMEEGFQFARDLSLAQIVIECDSQVVVSSLCNQGLVQSSVQKVIEGTRLGLC 262

Query: 256 VFREVVFLYNSRKCNSVADKLAKYARESGLSEIWVGNFPDWLCTSVEFDRSRFALVAL 311
            F         R CNS    +A++A+     +IWV + P  +   V+ D S  A +++
Sbjct: 263 WFAAWEVANTCRGCNSTTHIMARHAKFVNECDIWVEDIPSMIVDEVQNDVSCMAPISI 306

BLAST of Lcy04g002140 vs. NCBI nr
Match: XP_023891683.1 (uncharacterized protein LOC112003714 [Quercus suber])

HSP 1 Score: 106.7 bits (265), Expect = 3.7e-19
Identity = 67/212 (31.60%), Postives = 98/212 (46.23%), Query Frame = 0

Query: 80  VTCWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQANSKPNPSSISNPSSVCSQITS 139
           +T W IW +RN + HG         ++WIN+YLE YL AN    P   S  ++       
Sbjct: 89  MTAWGIWTNRNEVCHGKSRKPASVLARWINNYLEDYLMANHSTQPYKESTDAT------- 148

Query: 140 RNDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADLGAPLAEL 199
               W+ P   W+K N+D A        G+GV+ R   G  +A  S  L A LGA   E 
Sbjct: 149 ----WQFPKPLWYKANMDGAVFAQHREAGVGVMIRDHYGAVVATLSKKLKAPLGALKVEA 208

Query: 200 RAIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVESIWALIPVFREVVF 259
           +A+ E + F ++MG      ES++   V+ + +     S + + V    +L+P+FR V F
Sbjct: 209 KAMEEAVSFTRNMGIRDCIFESESLTVVNAMLRLIDPPSAIANNVAGSLSLLPMFRAVSF 268

Query: 260 LYNSRKCNSVADKLAKYARESGLSEIWVGNFP 292
            +  R  N VA  LA+ AR       WV   P
Sbjct: 269 SHVPRSRNKVAHTLAQVARGLSGLHTWVEETP 289

BLAST of Lcy04g002140 vs. NCBI nr
Match: XP_023880941.1 (uncharacterized protein LOC111993328 [Quercus suber])

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-19
Identity = 64/214 (29.91%), Postives = 107/214 (50.00%), Query Frame = 0

Query: 79  AVTCWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQANSKPN-PSSISNPSSVCSQI 138
           AVT WS+WN RN + HGD+       ++ I  YL++  Q N  P+ P  +S P       
Sbjct: 505 AVTAWSLWNHRNAVKHGDKCKTAARITKEIADYLKEIKQENLNPSRPPDVSVPH------ 564

Query: 139 TSRNDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADLGAPLA 198
                 W PP +GW+KVN D A    I   G+G++ R++ G  + A S  +   L A  +
Sbjct: 565 ------WSPPRNGWYKVNADGAVFKDIGCCGVGIVIRNNKGLLMGALSKLVKLPLKALES 624

Query: 199 ELRAIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVESIWALIPVFREV 258
           E RA+ EG++ A  +G  ++E+ESD+ + +  +    A+   +  ++E +   +  F+  
Sbjct: 625 EARAVQEGVLLAWDLGLREIEIESDSLVVISALLNPDAVPWAISKVIEGVLLSLRCFKAW 684

Query: 259 VFLYNSRKCNSVADKLAKYARESGLSEIWVGNFP 292
             ++  R  N+ A  +A+ AR      IWV + P
Sbjct: 685 RAVHVRRMGNAAAHIMAREARSVYDCIIWVEDTP 706

BLAST of Lcy04g002140 vs. NCBI nr
Match: XP_023880683.1 (uncharacterized protein LOC111993063 [Quercus suber])

HSP 1 Score: 102.8 bits (255), Expect = 5.3e-18
Identity = 71/238 (29.83%), Postives = 119/238 (50.00%), Query Frame = 0

Query: 66  NGARGKERGTVVAAVTCWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQANSKPNPS 125
           NG  G+++    AA T W++W++RN +  G      +  S+W   YL +Y  A     P 
Sbjct: 62  NGEAGEDK-VAHAATTAWALWHNRNEIRCGGARKSGQQLSRWATDYLREYNAAAEVKIPR 121

Query: 126 SISNPSSVCSQITSRNDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASS 185
                 SV  Q+      W PP +G +K+NVD A   +  A G+GV+ R  +G+  AA  
Sbjct: 122 -----ESVPRQVA----FWSPPRNGHFKINVDGAVFAAQKAVGVGVVIRDDEGRLEAALC 181

Query: 186 GSLDADLGAPLAELRAIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVE 245
             + A +GA  AE +A   G++FAK++G   + +E D+ +  + +   S+  S + S+V+
Sbjct: 182 RKITAPMGAVEAEAKAFEAGLLFAKAVGVRDIILEGDSLVVYNALCNISSPPSSIASIVQ 241

Query: 246 SIWALIPVFREVVFLYNSRKCNSVADKLAKYARESGLSE--IWVGNFPDWLCTSVEFD 302
            I  +   FR V + +  R+ N  A  LAK+A  SG++    W+   P  +  ++  D
Sbjct: 242 GIVDMSGEFRSVSYSHIRRQGNVPAHILAKHA--SGITNYIAWIEEDPCCIAQALSHD 287

BLAST of Lcy04g002140 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 2.1e-12
Identity = 53/214 (24.77%), Postives = 96/214 (44.86%), Query Frame = 0

Query: 65  GNGARGKERGTVVAAVTCWSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYLQA-NSKPN 124
           GNG    E+ + +     W +W +RN L+      G EF +Q +    E  L+    +  
Sbjct: 347 GNGNPQWEKASQLVPWLLWRLWKNRNELV----FRGREFNAQEVLRRAEDDLEEWRIRTE 406

Query: 125 PSSISNPSSVCSQITSRNDC--WKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAI 184
             S      V     +R+ C  W+PPP  W K N DA W       GIG + R+  G+  
Sbjct: 407 AESCGTKPQV-----NRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVK 466

Query: 185 AASSGSLDADLGAPLAELRAIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVE 244
              + +L        AEL A+   ++         +  ESD+++ ++ I     +W  ++
Sbjct: 467 WMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIE-ILNNDEIWPSLK 526

Query: 245 SLVESIWALIPVFREVVFLYNSRKCNSVADKLAK 276
             ++ +  L+  F EV F++  R+ N++A+++A+
Sbjct: 527 PTIQDLQRLLSQFTEVKFVFIPREGNTLAERVAR 550

BLAST of Lcy04g002140 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 8.2e-09
Identity = 49/198 (24.75%), Postives = 81/198 (40.91%), Query Frame = 0

Query: 83  WSIWNDRNRLIHGDQIPGVEFKSQWINHYLEKYL---QANSKPNPSSISNPSSVCSQITS 142
           W IW   N L+        +   +   +  +++L     N + N +  ++P        S
Sbjct: 49  WRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADP--------S 108

Query: 143 RNDCWKPPPSGWWKVNVDAAWVPSIPATGIGVICRSSDGQAIAASSGSLDADLGAPLAEL 202
           RN  W PP     K N DA+       +G+G I R+S G  I    G     +    AE 
Sbjct: 109 RNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAEC 168

Query: 203 RAIFEGMIFAKSMGCLQLEVESDNKLAVDFITKKSALWSEVESLVESIWALIPVFREVVF 262
             +   +  +   G  ++  E DN+     I  KS+    ++  +++I + IP F  + F
Sbjct: 169 STLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEF 228

Query: 263 LYNSRKCNSVADKLAKYA 278
            +  R+ N  AD LAK A
Sbjct: 229 SFKHREQNGCADFLAKQA 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DX301.2e-2838.56uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A7N2QY293.4e-1831.11Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A6P5RZ311.3e-1729.44uncharacterized protein LOC110751579 OS=Prunus avium OX=42229 GN=LOC110751579 PE... [more]
A0A803P6231.3e-1731.92Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6P5S7Q31.7e-1728.51uncharacterized protein LOC110753261 OS=Prunus avium OX=42229 GN=LOC110753261 PE... [more]
Match NameE-valueIdentityDescription
XP_022158377.12.6e-2838.56uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_023891465.11.7e-1928.57uncharacterized protein LOC112003484 [Quercus suber][more]
XP_023891683.13.7e-1931.60uncharacterized protein LOC112003714 [Quercus suber][more]
XP_023880941.14.8e-1929.91uncharacterized protein LOC111993328 [Quercus suber][more]
XP_023880683.15.3e-1829.83uncharacterized protein LOC111993063 [Quercus suber][more]
Match NameE-valueIdentityDescription
AT4G29090.12.1e-1224.77Ribonuclease H-like superfamily protein [more]
AT5G65005.18.2e-0924.75Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 150..279
e-value: 1.1E-16
score: 63.1
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 155..277
e-value: 8.5E-24
score: 83.7
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 176..279
score: 10.220834
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..70
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 143..302
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 154..275
e-value: 1.07064E-22
score: 89.2956
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 150..279

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g002140.1Lcy04g002140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity