Lcy04g001940 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g001940
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibonuclease H-like superfamily protein
LocationChr04: 11474462 .. 11475103 (+)
RNA-Seq ExpressionLcy04g001940
SyntenyLcy04g001940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAGACTTTTCACAAATCCAACTTTATTGGTGTCGAGGTTGATAAAAGGAAGGTACTCTAATCAGACGTCTTTGTTACATGCTCCAATTAAATCTAATTGTTCAGTGTTTTGGAGGGGCTTTGTGTGGGCACGGGATCTTTTAACAGGTGGCTTGCGGAAACGAATTGGAAATGGAAAATCCACCTTTTTCTTTACTGATCCATGGATTCCAAAGGAAAGCACTTTCAAACCAATTCCATTAGCAGGCACAGATTACCAAGAAACTGCTTTAGTTTCTGATTTTCTTACTCCAACAATAGGATGGGATTTGAGTAAGTTGAGTACTGTGGTCACGAAGGAGGATGTAAATATTATTGAGACAATTCCTATAAGTATTTCCAATGCAGATGACCAGTGGATTTGGCATTACTGCTCGAATGGTTTGTATAATGTTCGTAGCGGCTACAAGCGTGCGACAATTTTGCCAGTTGATCGAGAATCTACTAGCACTAATGATCAACGAGCATGGTGGACTACTCTGTGGAAATTGAAAATTCCTCAAAAAATTAAAATTTTTATGTGGAAAGCATATCATGGATGCCTTCCAACTAATTTTGATCTTTGGAAGCGAGGAGTTGATATTTCACCCATGTGCTAG

mRNA sequence

ATGTGGAGACTTTTCACAAATCCAACTTTATTGGTGTCGAGGTTGATAAAAGGAAGGTACTCTAATCAGACGTCTTTGTTACATGCTCCAATTAAATCTAATTGTTCAGTGTTTTGGAGGGGCTTTGTGTGGGCACGGGATCTTTTAACAGGTGGCTTGCGGAAACGAATTGGAAATGGAAAATCCACCTTTTTCTTTACTGATCCATGGATTCCAAAGGAAAGCACTTTCAAACCAATTCCATTAGCAGGCACAGATTACCAAGAAACTGCTTTAGTTTCTGATTTTCTTACTCCAACAATAGGATGGGATTTGAGTAAGTTGAGTACTGTGGTCACGAAGGAGGATGTAAATATTATTGAGACAATTCCTATAAGTATTTCCAATGCAGATGACCAGTGGATTTGGCATTACTGCTCGAATGGTTTGTATAATGTTCGTAGCGGCTACAAGCGTGCGACAATTTTGCCAGTTGATCGAGAATCTACTAGCACTAATGATCAACGAGCATGGTGGACTACTCTGTGGAAATTGAAAATTCCTCAAAAAATTAAAATTTTTATGTGGAAAGCATATCATGGATGCCTTCCAACTAATTTTGATCTTTGGAAGCGAGGAGTTGATATTTCACCCATGTGCTAG

Coding sequence (CDS)

ATGTGGAGACTTTTCACAAATCCAACTTTATTGGTGTCGAGGTTGATAAAAGGAAGGTACTCTAATCAGACGTCTTTGTTACATGCTCCAATTAAATCTAATTGTTCAGTGTTTTGGAGGGGCTTTGTGTGGGCACGGGATCTTTTAACAGGTGGCTTGCGGAAACGAATTGGAAATGGAAAATCCACCTTTTTCTTTACTGATCCATGGATTCCAAAGGAAAGCACTTTCAAACCAATTCCATTAGCAGGCACAGATTACCAAGAAACTGCTTTAGTTTCTGATTTTCTTACTCCAACAATAGGATGGGATTTGAGTAAGTTGAGTACTGTGGTCACGAAGGAGGATGTAAATATTATTGAGACAATTCCTATAAGTATTTCCAATGCAGATGACCAGTGGATTTGGCATTACTGCTCGAATGGTTTGTATAATGTTCGTAGCGGCTACAAGCGTGCGACAATTTTGCCAGTTGATCGAGAATCTACTAGCACTAATGATCAACGAGCATGGTGGACTACTCTGTGGAAATTGAAAATTCCTCAAAAAATTAAAATTTTTATGTGGAAAGCATATCATGGATGCCTTCCAACTAATTTTGATCTTTGGAAGCGAGGAGTTGATATTTCACCCATGTGCTAG

Protein sequence

MWRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGKSTFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNIIETIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKIPQKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC
Homology
BLAST of Lcy04g001940 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-07
Identity = 26/79 (32.91%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 2   WRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGK 61
           +R+   P  L+SRL++ RY   +S++   + +  S  WR  +  R+LL+ GL + IG+G 
Sbjct: 75  FRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGI 134

Query: 62  STFFFTDPWIPKESTFKPI 81
            T  + D WI  E+   P+
Sbjct: 135 HTKVWLDRWIMDETPLPPL 153

BLAST of Lcy04g001940 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 2.4e-47
Identity = 92/213 (43.19%), Postives = 129/213 (60.56%), Query Frame = 0

Query: 1    MWRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNG 60
            +WR   +P LLVS+++K +Y   TSLL A   S  S FW+GF+W RDLL  GLR R+GNG
Sbjct: 963  VWRFLQHPNLLVSKVLKHKYFKDTSLLQASNNSKSSYFWKGFLWGRDLLVKGLRLRVGNG 1022

Query: 61   KSTFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNII 120
             +   F+DPW+P+ +TFKP+         T  V+ F+T    WD++ +S     ED ++I
Sbjct: 1023 STIKAFSDPWLPRPTTFKPLRFNNGALDTT--VASFITADGNWDVTSISHSFCNEDRDLI 1082

Query: 121  ETIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKI 180
             ++PIS  N  D W+WHY   G Y+VRSGYK    L  +  S STN +   W ++WKL +
Sbjct: 1083 LSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNSIWKLTV 1142

Query: 181  PQKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC 214
            P KIKIF+W++ H  +PT  +L  RG+   P C
Sbjct: 1143 PTKIKIFIWRSAHEHIPTAQNLLLRGIGELPAC 1173

BLAST of Lcy04g001940 vs. ExPASy TrEMBL
Match: A0A803NU77 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 90/212 (42.45%), Postives = 124/212 (58.49%), Query Frame = 0

Query: 2    WRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGK 61
            WR+F+NPT L+SR++K RY + +S L +   S  S+ W+G VW ++LL  GLR ++G+G 
Sbjct: 1191 WRVFSNPTSLLSRILKARYYSISSFLDSRKGSYPSLTWQGIVWGKELLLKGLRWKVGDGH 1250

Query: 62   STFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNIIE 121
            S    +DPWIP  + FKP+  AGT   +   VS  +TP   W+L  L       DV+ I 
Sbjct: 1251 SILCVSDPWIPGITNFKPLQSAGTTINQQ--VSSLITPERQWNLELLHATFLNSDVDKIL 1310

Query: 122  TIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKIP 181
             IP++I  A DQ IWHY +NG Y V+SGY  AT L     + S    + WW   W L +P
Sbjct: 1311 QIPLTIFPAGDQLIWHYETNGAYTVKSGYALATSLEEQLPTVSGLQSQNWWNKFWSLTLP 1370

Query: 182  QKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC 214
             K++IF+W+A + CLPT   L  R    SPMC
Sbjct: 1371 SKVRIFLWRAINDCLPTAATLHHRHNADSPMC 1400

BLAST of Lcy04g001940 vs. ExPASy TrEMBL
Match: A0A803NM27 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 3.3e-41
Identity = 85/212 (40.09%), Postives = 122/212 (57.55%), Query Frame = 0

Query: 2    WRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGK 61
            WRLF NP  L+ R++KGRY +++  L A      S+ W+GF W R+LL  GLR ++GNG 
Sbjct: 1293 WRLFQNPESLLFRVLKGRYFSRSDFLSAATCGVSSLTWQGFCWGRELLKKGLRLQVGNGF 1352

Query: 62   STFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNIIE 121
                 TDPWIP  S F PI   G     T  V+D++TP   W++SKL+   +  DV  I 
Sbjct: 1353 DIACATDPWIPGNSIFTPIYFTGA---PTNTVADYITPEKEWNVSKLNADFSSADVERIL 1412

Query: 122  TIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKIP 181
            ++P+S     D W+WH  + G Y V+SGY  A +L  +   + ++   +WW + W+LK+P
Sbjct: 1413 SLPLSHHAHSDYWVWH-ATGGQYEVKSGYHVACLLADENPVSVSSPNVSWWKSFWQLKLP 1472

Query: 182  QKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC 214
             K+K+F WKA H  LP   +L+KR    S  C
Sbjct: 1473 PKVKLFAWKAIHNALPVASELYKRKSLTSASC 1500

BLAST of Lcy04g001940 vs. ExPASy TrEMBL
Match: A0A803PVI9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 7.4e-41
Identity = 84/212 (39.62%), Postives = 124/212 (58.49%), Query Frame = 0

Query: 2   WRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGK 61
           WR+F+NPT L+SR+++ RY + +S L +   S  S+ W+G VW ++LL  GLR ++G+G+
Sbjct: 750 WRVFSNPTSLLSRILQARYFSVSSFLDSNKGSYPSLTWQGIVWGKELLVKGLRWKVGDGQ 809

Query: 62  STFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNIIE 121
           +  F +DPWIP  + FKP+    T   +   VS F+T    W+L  L       DV  + 
Sbjct: 810 NILFASDPWIPGFTNFKPLQSVVTSTNQ--YVSSFITADRRWNLELLYDTFLISDVEKVL 869

Query: 122 TIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKIP 181
            IP+SI  A DQ IW++ +NG Y V+SGY  AT L     + S    + WW   W L +P
Sbjct: 870 QIPLSIFPASDQLIWNFETNGAYTVKSGYALATSLEEQMPNASGLQCQTWWNKFWSLTLP 929

Query: 182 QKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC 214
            K++IF+W+A + CLPT   L  R +  SP+C
Sbjct: 930 SKVRIFLWRAINDCLPTAATLHHRHIADSPIC 959

BLAST of Lcy04g001940 vs. ExPASy TrEMBL
Match: A0A803Q6Z2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 9.7e-41
Identity = 85/212 (40.09%), Postives = 120/212 (56.60%), Query Frame = 0

Query: 2    WRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGK 61
            WR+  +P+ L++R++K RY      L A   +  S+ W+  VW ++LL  GLR RIG+G 
Sbjct: 1608 WRILEDPSSLIARVLKSRYFATGVFLEATAGAQPSLTWKSIVWGKELLLKGLRWRIGSGA 1667

Query: 62   STFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNIIE 121
                 + PWIP  S FKP+     D      V+DF+T +  WD+ KL    T  DV+ I 
Sbjct: 1668 DVNCVSQPWIPGPSNFKPLLFLSPD--RDVKVADFITHSRQWDVPKLQQFFTPPDVDRIL 1727

Query: 122  TIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKIP 181
            +IP+S+   +D  +WHY S G Y V+SGYK A+ +P D +  S++    WW   W LK+P
Sbjct: 1728 SIPLSLFPCEDVLLWHYSSAGFYTVKSGYKLASDVP-DSQPNSSHTTETWWQYFWGLKLP 1787

Query: 182  QKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC 214
             KI+IF W+AYH  LPT   L  R +  SP C
Sbjct: 1788 SKIRIFAWRAYHEALPTAAILQYRHISSSPQC 1816

BLAST of Lcy04g001940 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 4.9e-47
Identity = 92/213 (43.19%), Postives = 129/213 (60.56%), Query Frame = 0

Query: 1    MWRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNG 60
            +WR   +P LLVS+++K +Y   TSLL A   S  S FW+GF+W RDLL  GLR R+GNG
Sbjct: 963  VWRFLQHPNLLVSKVLKHKYFKDTSLLQASNNSKSSYFWKGFLWGRDLLVKGLRLRVGNG 1022

Query: 61   KSTFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNII 120
             +   F+DPW+P+ +TFKP+         T  V+ F+T    WD++ +S     ED ++I
Sbjct: 1023 STIKAFSDPWLPRPTTFKPLRFNNGALDTT--VASFITADGNWDVTSISHSFCNEDRDLI 1082

Query: 121  ETIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKI 180
             ++PIS  N  D W+WHY   G Y+VRSGYK    L  +  S STN +   W ++WKL +
Sbjct: 1083 LSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNSIWKLTV 1142

Query: 181  PQKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC 214
            P KIKIF+W++ H  +PT  +L  RG+   P C
Sbjct: 1143 PTKIKIFIWRSAHEHIPTAQNLLLRGIGELPAC 1173

BLAST of Lcy04g001940 vs. NCBI nr
Match: XP_030486845.1 (uncharacterized protein LOC115703751 [Cannabis sativa])

HSP 1 Score: 179.1 bits (453), Expect = 4.0e-41
Identity = 82/212 (38.68%), Postives = 128/212 (60.38%), Query Frame = 0

Query: 2    WRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGK 61
            WR+F+NP+ L+SR++K RY + +S L A   S  S+ W+G  W +DLL+ GLR ++G+G+
Sbjct: 883  WRIFSNPSSLLSRILKARYYSHSSFLDAGHGSYPSLTWQGIHWGKDLLSKGLRWKVGDGQ 942

Query: 62   STFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNIIE 121
            S    +DPW+P  + F+P+ LAG D  +   VS  +T    W+L+ L++     DV  I 
Sbjct: 943  SILCKSDPWLPGVTNFRPLVLAGID--DHIKVSSLITAERYWNLNLLNSYFIPSDVERIL 1002

Query: 122  TIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKIP 181
            +IP++++   D  IWH+  NG Y V+SGY  AT L   + S S    + WW   W+L +P
Sbjct: 1003 SIPLTLTPCSDALIWHHEHNGCYTVKSGYFMATNLEEQQPSISGTQSQQWWKKFWRLSLP 1062

Query: 182  QKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC 214
             K++IF+W+A + CLP    L  + +  SP+C
Sbjct: 1063 SKVRIFLWRAINDCLPATAVLHHKHIAQSPIC 1092

BLAST of Lcy04g001940 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-40
Identity = 84/212 (39.62%), Postives = 122/212 (57.55%), Query Frame = 0

Query: 2    WRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGK 61
            WR+   P  L+S L++ RY +  + L A + SN S+ WR  VW ++LL  GLR R+G+G+
Sbjct: 884  WRILEFPNSLLSNLLRHRYFSNGNYLIAGLGSNPSLTWRSLVWGKELLLKGLRWRVGSGE 943

Query: 62   STFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNIIE 121
                 TD W+P  +TFKP    G D     LV+D +T    WD+  L T   + D+N + 
Sbjct: 944  RINCKTDSWLPGHTTFKPYFFKGPD--PNLLVADLITEHRTWDMISLETNFNQADINRVL 1003

Query: 122  TIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKIP 181
            +IP+S    DD  IW+    G+YNV+SGY  A  L    +ST +N    WW+  WKLK+P
Sbjct: 1004 SIPLSPYPHDDVLIWNQSFTGVYNVKSGYHFAVSLAEQDDSTCSNSIEHWWSNFWKLKLP 1063

Query: 182  QKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC 214
             K++IF+WK +H  LP   +L++R +  SP C
Sbjct: 1064 PKVRIFVWKVFHTSLPVAAELYRRHIAFSPYC 1093

BLAST of Lcy04g001940 vs. NCBI nr
Match: XP_030509050.1 (uncharacterized protein LOC115723712 [Cannabis sativa])

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-40
Identity = 85/212 (40.09%), Postives = 120/212 (56.60%), Query Frame = 0

Query: 2    WRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGK 61
            WR+  +P+ L++R++K RY      L A   +  S+ W+  VW ++LL  GLR RIG+G 
Sbjct: 884  WRILEDPSSLIARVLKSRYFATGVFLEATAGAQPSLTWKSIVWGKELLLKGLRWRIGSGA 943

Query: 62   STFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNIIE 121
                 + PWIP  S FKP+     D      V+DF+T +  WD+ KL    T  DV+ I 
Sbjct: 944  DVNCVSQPWIPGPSNFKPLLFLSPD--RDVKVADFITHSRQWDVPKLQQFFTPPDVDRIL 1003

Query: 122  TIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKIP 181
            +IP+S+   +D  +WHY S G Y V+SGYK A+ +P D +  S++    WW   W LK+P
Sbjct: 1004 SIPLSLFPCEDVLLWHYSSAGFYTVKSGYKLASDVP-DSQPNSSHTTETWWQYFWGLKLP 1063

Query: 182  QKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC 214
             KI+IF W+AYH  LPT   L  R +  SP C
Sbjct: 1064 SKIRIFAWRAYHEALPTAAILQYRHISSSPQC 1092

BLAST of Lcy04g001940 vs. NCBI nr
Match: XP_030509336.1 (uncharacterized protein LOC115724021 [Cannabis sativa])

HSP 1 Score: 176.4 bits (446), Expect = 2.6e-40
Identity = 85/196 (43.37%), Postives = 117/196 (59.69%), Query Frame = 0

Query: 2   WRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGK 61
           WR+   P  L+SR++KGRY +    L AP     S+ W+G  W RDLL  GLR +IG+G 
Sbjct: 616 WRIIQFPHSLLSRVLKGRYFSHNDFLQAPKTGCSSLTWQGICWGRDLLVKGLRLKIGDGS 675

Query: 62  STFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPTIGWDLSKLSTVVTKEDVNIIE 121
           S    +DPWIP+ S F PI   G D Q   LVS ++T    W+L  L+   +  DV+ I 
Sbjct: 676 SVQCISDPWIPRHSEFTPICFLG-DTQN--LVSYYITDDKEWNLPLLARDFSAVDVDYIL 735

Query: 122 TIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRESTSTNDQRAWWTTLWKLKIP 181
           +IP+S S+  DQWIWH+ ++  Y V+SGY  A  L     S S+N+Q  WW   W L++P
Sbjct: 736 SIPLSSSSVSDQWIWHFTNSNEYTVQSGYHLANDLEDSDLSNSSNNQHTWWKYFWNLQLP 795

Query: 182 QKIKIFMWKAYHGCLP 198
            K+KIF+WKA+H  +P
Sbjct: 796 SKVKIFVWKAFHCAIP 808

BLAST of Lcy04g001940 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-17
Identity = 63/206 (30.58%), Postives = 93/206 (45.15%), Query Frame = 0

Query: 16  IKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGKSTFFFTDPWIPKES 75
           +K RY    S+L A ++   S  W   +    LL  G R  IG+G++     D  +    
Sbjct: 1   MKARYFKDVSILDAKVRKQQSYGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIV---D 60

Query: 76  TFKPIPLAGTD-YQETALVSDF--LTPTIGWDLSKLSTVVTKEDVNIIETIPISISNADD 135
           +  P PL   + Y+E  + + F        WD SK+S  V + D   I  I ++ S   D
Sbjct: 61  SHPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPD 120

Query: 136 QWIWHYCSNGLYNVRSGY-----KRATILPVDRESTSTNDQRAWWTTLWKLKIPQKIKIF 195
           + IW+Y + G Y VRSGY       +T +P       + D +   T +W L I  K+K F
Sbjct: 121 KIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLK---TRIWNLPIMPKLKHF 180

Query: 196 MWKAYHGCLPTNFDLWKRGVDISPMC 214
           +W+A    L T   L  RG+ I P C
Sbjct: 181 LWRALSQALATTERLTTRGMRIDPSC 200

BLAST of Lcy04g001940 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 52/207 (25.12%), Postives = 91/207 (43.96%), Query Frame = 0

Query: 1   MWRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNG 60
           MWR+ + P  L++++ K RY +++  L+AP+ S  S  W+    ++++L  G R  +GNG
Sbjct: 73  MWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNG 132

Query: 61  KSTFFFTDPWIPKESTFKPIPLAGTDYQETALVSDFLTPT-------IGWDLSKLSTVVT 120
           +    +   W+  +     + +     QE A VS  L  +         W    +  +  
Sbjct: 133 EDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFP 192

Query: 121 KEDVNIIETIPISISNADDQWIWHYCSNGLYNVRSGYKRATILPVDRES---TSTNDQRA 180
           + +  +I  +        D + W Y S+G Y V+SGY   T +   R S    S      
Sbjct: 193 EVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNP 252

Query: 181 WWTTLWKLKIPQKIKIFMWKAYHGCLP 198
            +  +WK +   KI+ F+WK     LP
Sbjct: 253 IYQKIWKSQTSPKIQHFLWKCLSNSLP 279

BLAST of Lcy04g001940 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 58.2 bits (139), Expect = 9.6e-09
Identity = 26/79 (32.91%), Postives = 44/79 (55.70%), Query Frame = 0

Query: 2   WRLFTNPTLLVSRLIKGRYSNQTSLLHAPIKSNCSVFWRGFVWARDLLTGGLRKRIGNGK 61
           +R+   P  L+SRL++ RY   +S++   + +  S  WR  +  R+LL+ GL + IG+G 
Sbjct: 75  FRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGI 134

Query: 62  STFFFTDPWIPKESTFKPI 81
            T  + D WI  E+   P+
Sbjct: 135 HTKVWLDRWIMDETPLPPL 153

BLAST of Lcy04g001940 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-05
Identity = 27/74 (36.49%), Postives = 37/74 (50.00%), Query Frame = 0

Query: 146 VRSGYKRATILPVDREST------STNDQRAWWTTLWKLKIPQKIKIFMWKAYHGCLPTN 205
           +RSGY  AT   +  E        ST  ++A    +WKL +  KIK F+W+   G L TN
Sbjct: 6   LRSGYWVATHEDLLEEEAIQPPPGSTEVKQA----IWKLHVAPKIKHFLWRCVTGALATN 65

Query: 206 FDLWKRGVDISPMC 214
             L  R +D  P+C
Sbjct: 66  TRLRSRNIDADPIC 75

BLAST of Lcy04g001940 vs. TAIR 10
Match: AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-05
Identity = 18/43 (41.86%), Postives = 23/43 (53.49%), Query Frame = 0

Query: 171 WWTTLWKLKIPQKIKIFMWKAYHGCLPTNFDLWKRGVDISPMC 214
           W   +W LKI  KIK+ +WKA +  LP    L  R + I P C
Sbjct: 5   WIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFC 47

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P932951.4e-0732.91Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A6J1DX302.4e-4743.19uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803NU772.1e-4342.45Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NM273.3e-4140.09Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PVI97.4e-4139.62Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q6Z29.7e-4140.09Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022158377.14.9e-4743.19uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_030486845.14.0e-4138.68uncharacterized protein LOC115703751 [Cannabis sativa][more]
XP_030508852.11.2e-4039.62uncharacterized protein LOC115723496 [Cannabis sativa][more]
XP_030509050.12.0e-4040.09uncharacterized protein LOC115723712 [Cannabis sativa][more]
XP_030509336.12.6e-4043.37uncharacterized protein LOC115724021 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT3G09510.12.5e-1730.58Ribonuclease H-like superfamily protein [more]
AT4G29090.11.3e-1625.12Ribonuclease H-like superfamily protein [more]
ATMG00310.19.6e-0932.91RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT2G02650.12.2e-0536.49Ribonuclease H-like superfamily protein [more]
AT3G26855.12.2e-0541.86RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 163..213
e-value: 2.2E-10
score: 41.1
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 40..213
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 40..213

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g001940.1Lcy04g001940.1mRNA