Lcy04g001630 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g001630
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotrans_gag domain-containing protein
LocationChr04: 9162217 .. 9165693 (+)
RNA-Seq ExpressionLcy04g001630
SyntenyLcy04g001630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTAAGCCGATTCGCCGAAGTCTTCCGTGCGAACAACGCCGCCACTGTCAACACGATGATGAGGATCTTTCCGGTGACATTAGAGGGTGAGGTAGCGCTTTGGTATGACTTGAACATTGAACCGTACCCTCCGATTTCTTGGGAAGAATTGAAGGCTTCGTTCTTGGACGCTTATAATAAAATCGAATTGGCTAATCAGTTGCGATCGGAGCTTATGACGATCAATCAACAGCCGGAGGAGAATGTACGTTCGTATTTTCTAAGGCTGCAACTGATTTTGAAGAAATGGTCGCTGCGTAATGAACTTTCCGATGGCTTGTTGAAAGCGATTTTCATGGATGGATTGAGGGAAGATTTTAAGAAAGTGGGAGAAGAGAGAAGAAGAAGAGAAGAGGAGGAAAAAAAAAAAAGTAACGCCAGCGGTTAAAGATGAATGATGGTGGTTGAGGTTGAGAGAAAGAAGATGATGATGGTTGGGTTTGAGAAGAAGAAGAAAGAAGGGGAAAAAGAGGAGGGAAAATGAAAAAAAAAATTATGTTTTTTAATTAATTTATTATTATTTTATTTTTAAAATTTAAAAGATACGTGCACGTCAGCAAACCGTTAGTTTTTGACGAAAAAATTGATGGAGGGACTAAAATGCAACTAAAATCAAACCTCAGGGACTAAATTGTTTAGTTTGAAAAGTCAAGGGACCAAAATGAAACCTAACCCAAACCTGAGAGACTACAAGTGTATTTTTCCCTAATTATTAATAATAATAAATATATTTTTTCCCTAAAAAATAAAAGCCACGTCAGCTTTCTGTTAAGAGTTAACAGAAAAATGGATGGAAGGACTAAAACAAAACGATATCCAAACCTCAGGGACTAAATTGTCGAGTTTGAAAACTCGGGAACTAAAATGAAACTTAACCCAAACCTCAAGGACGAAAAGTTTATTTTTTCTTAAATATTAACAATTATAATTATAAATTATTTTTTAAAAAAATGAACTTATTTGTCAATTGATGGTTAACGTAAATATTCGTCGATGTATCGCTAACATGAGTATAGCTCTAACGACCAAGAGATCTGTGGTCCGAATACCCCCACTCCTACACGTTGTCAAAAAAATAAAAAATCATTGATATATCAATATTTTATCAATGCATCCATCGATGTATTTGTAACATTAAGATTAGAATGTTTTTATTGACATGAATATTTTAATCACCATAGATGCTTAAAATGGACTAATATTATACAAAATTTGGATATATATAGTGTAGTGACTTGAGCTTAAAATGAACTAATATCATACACGTGATATGTAATTCACTAAAATATTTGGAGATATTTTAATTTAAATTGTGTTATTAAATATATAATGGGAAAAAATCAATTTTGACCCCTAAACTTAGCCTGTTGTATCAATTTTAACCCTAAACTTTCAATTTCATCAAATTGAACCCTAAACTTAACAAATTGTATCAATTTGAACCTCAAACTTGCATAAATGTTGCAATGTAGACCTTTGGTCAAATTTTCATTTGAATTGCTATTAAAACATGTAATTGACAATTTTCTTTTCCTTTTTTTAATTCATATTGCACCTGAGTTAATGTTTTGTAAGAATTTTTTTGGAAAAACCAAAAGAAATCAAATATCCCAAACTATTCTTCTCATTGTTATCCAAAAAAGAATCACAAATTTATTGGCAACAAGAAAAATCCAACAAATATGTGAAATAAAAAACTCTAAATTTCTTTATTTTCGTTTCCTTCATTTGTACATTCTTCTAATCAGCAATAAAAAAAAACCGTAAAAGAAGAAAAAAAATCCCACAAAATTCTTAACAACAATAAAAAAACCAGCAAATATTTGAAGATAAAAAAACCTCCAAAGTTTTTTTGCTTTCATAATCTTAAATAGTAGCGAAAAAATCCTCACAATTGAAGTTCTCAACAACGAGAAAAAATCATTTAAAATAAAGATTCTCCAATATTTTATTTATAAGAAACCAATTCAGGTGTAGTGTGAATTAAGAAAAAAAAATGAAGAAATAATCAATTACGTACAGTGATTCAAACAGAAAGTTAACCAAAAGTATACATTGTAACACTTATGCAAGTTTGAGGTTAAAATCGATACAATCTGATAAGTATGAGGTTCAATTTGATAAAATTGAAAGTTCAGGGTTAAAATTGATACAACTTGTTAAGTTTAGGGTTTAATTTGATGAAATTGAAAGTTCAGGGTTAAAATTGATACAACCCCCAAAGTTTAGGGTTAAAAATGTTTTTTTCCCCATATATAATTTAGGCCATGTTTGATAACCATTTGGTTTTTTAAAATTAAGTTTAAAAACACTACTCTCACACATAAGTTTCTTGATTTAATTTTGTTATCTACCTTCTTCTTATGTTTTAAAAAACCAAGCCAAAATTTGAAAACTAAAAAAAGTAGTTTCCAAAAACTTGTTTTTTGTTTTTGGAATTTGACTAGGAAGTTAAATGTGTGATTGACAAAGATTCAAACCATGATAACAAAATTGGGGAAAAACAAGCATAATTTTCAAAAACCAAAAACCAAAAATCAAATGGTTATCAAACGGGACCTTAATAATTATTTACAATTAATTAATTGTGAGCAACATCCGTTCTGTTATTTTTAAATACAAAAAAGAAAAAGAAAGATGTTTTATTTGTTGATTGGCTAAAAGATTTTAACTCCTAGTCTTGAAGTAAATAAAATATTGAATTCTAGTACAATTAAAATAATATGGAAAAGCAATGGATAAAACCCTGTACCTCTCGCATGCAAAGCGAGTGCTCTATCGTTTGACCTACATCCCCAATTTCATTTACTAAAATATTTTAAGATGTAATTTCATAGTTATTAATCGAAGCTTCAAAAATCTCCATTATAAATTGTGATGGACAATAGTTTCAAAATATAAAGGTGCAGAAAATGAGAGGCAATCTATATATAATTTATTACCAAATGATATTCTGAGAAAATACAGAGGACAACATACCTGTTAAGGGACTACCGGACACACACATATCTCCACAATGGTATGATATTGTCCACTTTGGGCATAAGCCCTCATGACTTTGTTTTTGGATCACCCCAAAAGGCCTCATACCAATGGAGATACTTGTCCTCCCTTATATACCCATGATCATCCCCTTATCTAGCCAATGTGGGACTTTGGTCGCACTCCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCGCTCAAATAGTCATCTATCCGTCCAACTCTCTAGGCTTCACCGTTTTACCGAGAGTTCTTGCTCTTATCTAGGACGACTCCTCTTCTCCGGAGTATACCCGCCTACCCAGAGCTCAACCACGGACCTCCCCATGACTATTTCAAGGCTCACACAACTTCTTTGTTCGGCACCCGAGGATTCCACCCGACACGGCTACACCCGGGGCATGGCTCTGATACCAACTGA

mRNA sequence

ATGCATTTAAGCCGATTCGCCGAAGTCTTCCGTGCGAACAACGCCGCCACTGTCAACACGATGATGAGGATCTTTCCGGTGACATTAGAGGGTGAGGTAGCGCTTTGGTATGACTTGAACATTGAACCGTACCCTCCGATTTCTTGGGAAGAATTGAAGGCTTCGTTCTTGGACGCTTATAATAAAATCGAATTGGCTAATCAGTTGCGATCGGAGCTTATGACGATCAATCAACAGCCGGAGGAGAATGTACGTTCGACGACTCCTCTTCTCCGGAGTATACCCGCCTACCCAGAGCTCAACCACGGACCTCCCCATGACTATTTCAAGGCTCACACAACTTCTTTGTTCGGCACCCGAGGATTCCACCCGACACGGCTACACCCGGGGCATGGCTCTGATACCAACTGA

Coding sequence (CDS)

ATGCATTTAAGCCGATTCGCCGAAGTCTTCCGTGCGAACAACGCCGCCACTGTCAACACGATGATGAGGATCTTTCCGGTGACATTAGAGGGTGAGGTAGCGCTTTGGTATGACTTGAACATTGAACCGTACCCTCCGATTTCTTGGGAAGAATTGAAGGCTTCGTTCTTGGACGCTTATAATAAAATCGAATTGGCTAATCAGTTGCGATCGGAGCTTATGACGATCAATCAACAGCCGGAGGAGAATGTACGTTCGACGACTCCTCTTCTCCGGAGTATACCCGCCTACCCAGAGCTCAACCACGGACCTCCCCATGACTATTTCAAGGCTCACACAACTTCTTTGTTCGGCACCCGAGGATTCCACCCGACACGGCTACACCCGGGGCATGGCTCTGATACCAACTGA

Protein sequence

MHLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYNKIELANQLRSELMTINQQPEENVRSTTPLLRSIPAYPELNHGPPHDYFKAHTTSLFGTRGFHPTRLHPGHGSDTN
Homology
[Close]
BLAST of Lcy04g001630 vs. ExPASy TrEMBL
Match: A0A6A6K9V2 (Retrotrans_gag domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_005688 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.3e-26
Identity = 58/85 (68.24%), Postives = 74/85 (87.06%), Query Frame = 0 

Query: 2   HLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYN 61
           HLSRF +V RANNA++ +TMMRIFPVTLE E ALWYDLNIEPYP +SW+E+K SFL+AY+
Sbjct: 101 HLSRFVKVCRANNASSTDTMMRIFPVTLENEAALWYDLNIEPYPSLSWDEIKISFLEAYH 160

Query: 62  KIELANQLRSELMTINQQPEENVRS 87
           +IE  +QLRSEL+ +NQ+ +E+VRS
Sbjct: 161 RIEFVDQLRSELLMLNQESDESVRS 185

[Close]
BLAST of Lcy04g001630 vs. ExPASy TrEMBL
Match: A0A2C9W9V9 (Retrotrans_gag domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G153000 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 58/85 (68.24%), Postives = 73/85 (85.88%), Query Frame = 0 

Query: 2   HLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYN 61
           HLSRF +V RANNA++ +TM+RIFPVTLE E ALWYDLNIEPYP +SW+E+K SFL+AY 
Sbjct: 96  HLSRFVKVCRANNASSTDTMVRIFPVTLENEAALWYDLNIEPYPSLSWDEIKLSFLEAYY 155

Query: 62  KIELANQLRSELMTINQQPEENVRS 87
           +IE  +QLRSEL+ +NQ+ EE+VRS
Sbjct: 156 RIETVDQLRSELLMLNQESEESVRS 180

[Close]
BLAST of Lcy04g001630 vs. ExPASy TrEMBL
Match: A0A061DJI4 (Retrotrans_gag domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_001704 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 65/110 (59.09%), Postives = 80/110 (72.73%), Query Frame = 0 

Query: 2   HLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYN 61
           HLSRFA+V RANN ++V+ MMRIFPVTLE E  LWYDLNIEPYP + WEE+K+SFL AY+
Sbjct: 144 HLSRFAKVCRANNVSSVDMMMRIFPVTLENEAGLWYDLNIEPYPSLRWEEIKSSFLQAYH 203

Query: 62  KIELANQLRSELMTINQQPEENVRSTTPLLR-SIPAYPELNHGPPHDYFK 111
           K ++  QLR ELM INQ  EE VRS    L+ S+  +P+  HG P +  K
Sbjct: 204 KTQVTEQLRHELMMINQGSEERVRSYFLRLQWSLQRWPD--HGIPENLLK 251

[Close]
BLAST of Lcy04g001630 vs. ExPASy TrEMBL
Match: A0A7N2R9A7 (Retrotrans_gag domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 0 

Query: 2   HLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYN 61
           H+SRFA+V  ANN +T + MMRIFPVTLE E ALWYDLNIEPYP ++WEE+K+SFL AY+
Sbjct: 140 HVSRFAKVCVANNVSTTDMMMRIFPVTLEDEAALWYDLNIEPYPSLTWEEIKSSFLHAYH 199

Query: 62  KIELANQLRSELMTINQQPEENVRS 87
           KIE+ +QLRSELM INQ  EE+VRS
Sbjct: 200 KIEVVDQLRSELMMINQGDEESVRS 224

[Close]
BLAST of Lcy04g001630 vs. ExPASy TrEMBL
Match: W9R9S0 (Retrotrans_gag domain-containing protein OS=Morus notabilis OX=981085 GN=L484_004813 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 6.2e-25
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 0 

Query: 2   HLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYN 61
           HLSRFA+V RANN ++++ MM+IFPVTLE E ALWYDLN+EPY  +SWEE+K+SF  AY 
Sbjct: 134 HLSRFAKVCRANNVSSIDMMMKIFPVTLEDEAALWYDLNVEPYEELSWEEIKSSFYHAYG 193

Query: 62  KIELANQLRSELMTINQQPEENVRSTTPLLRSI-PAYPELNHGPPHDYFK 111
           KIEL  QLRS+LMTINQ   E+VRS    L+ I   +PE  HG   D  K
Sbjct: 194 KIELTEQLRSQLMTINQGDAESVRSYFLRLQWILKKWPE--HGLSDDLLK 241

[Close]
BLAST of Lcy04g001630 vs. NCBI nr
Match: KAG6604769.1 (hypothetical protein SDJN03_02086, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 7.5e-33
Identity = 78/106 (73.58%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 2   HLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYN 61
           HLSRFA+V RANNAA+V  MMRIFPVTL+GE  LWYDLNIEPYPPISWEELK+SFLDAYN
Sbjct: 101 HLSRFAKVCRANNAASVEIMMRIFPVTLQGEALLWYDLNIEPYPPISWEELKSSFLDAYN 160

Query: 62  KIELANQLRSELMTINQQPEENVRS----TTPLLRSIPAYPELNHG 104
           KIELA QLRSELMTI+Q+PEENVRS       +L+  P   EL+ G
Sbjct: 161 KIELAEQLRSELMTISQRPEENVRSYFLRLQLILKKWPPGNELSDG 206

[Close]
BLAST of Lcy04g001630 vs. NCBI nr
Match: KAF2285592.1 (hypothetical protein GH714_005688 [Hevea brasiliensis])

HSP 1 Score: 127.9 bits (320), Expect = 6.8e-26
Identity = 58/85 (68.24%), Postives = 74/85 (87.06%), Query Frame = 0 

Query: 2   HLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYN 61
           HLSRF +V RANNA++ +TMMRIFPVTLE E ALWYDLNIEPYP +SW+E+K SFL+AY+
Sbjct: 101 HLSRFVKVCRANNASSTDTMMRIFPVTLENEAALWYDLNIEPYPSLSWDEIKISFLEAYH 160

Query: 62  KIELANQLRSELMTINQQPEENVRS 87
           +IE  +QLRSEL+ +NQ+ +E+VRS
Sbjct: 161 RIEFVDQLRSELLMLNQESDESVRS 185

[Close]
BLAST of Lcy04g001630 vs. NCBI nr
Match: OAY55424.1 (hypothetical protein MANES_03G153000v8 [Manihot esculenta])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25
Identity = 58/85 (68.24%), Postives = 73/85 (85.88%), Query Frame = 0 

Query: 2   HLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYN 61
           HLSRF +V RANNA++ +TM+RIFPVTLE E ALWYDLNIEPYP +SW+E+K SFL+AY 
Sbjct: 96  HLSRFVKVCRANNASSTDTMVRIFPVTLENEAALWYDLNIEPYPSLSWDEIKLSFLEAYY 155

Query: 62  KIELANQLRSELMTINQQPEENVRS 87
           +IE  +QLRSEL+ +NQ+ EE+VRS
Sbjct: 156 RIETVDQLRSELLMLNQESEESVRS 180

[Close]
BLAST of Lcy04g001630 vs. NCBI nr
Match: EOX92844.1 (Uncharacterized protein TCM_001704 [Theobroma cacao])

HSP 1 Score: 125.2 bits (313), Expect = 4.4e-25
Identity = 65/110 (59.09%), Postives = 80/110 (72.73%), Query Frame = 0 

Query: 2   HLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYN 61
           HLSRFA+V RANN ++V+ MMRIFPVTLE E  LWYDLNIEPYP + WEE+K+SFL AY+
Sbjct: 144 HLSRFAKVCRANNVSSVDMMMRIFPVTLENEAGLWYDLNIEPYPSLRWEEIKSSFLQAYH 203

Query: 62  KIELANQLRSELMTINQQPEENVRSTTPLLR-SIPAYPELNHGPPHDYFK 111
           K ++  QLR ELM INQ  EE VRS    L+ S+  +P+  HG P +  K
Sbjct: 204 KTQVTEQLRHELMMINQGSEERVRSYFLRLQWSLQRWPD--HGIPENLLK 251

[Close]
BLAST of Lcy04g001630 vs. NCBI nr
Match: EXB78111.1 (hypothetical protein L484_004813 [Morus notabilis])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-24
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 0 

Query: 2   HLSRFAEVFRANNAATVNTMMRIFPVTLEGEVALWYDLNIEPYPPISWEELKASFLDAYN 61
           HLSRFA+V RANN ++++ MM+IFPVTLE E ALWYDLN+EPY  +SWEE+K+SF  AY 
Sbjct: 134 HLSRFAKVCRANNVSSIDMMMKIFPVTLEDEAALWYDLNVEPYEELSWEEIKSSFYHAYG 193

Query: 62  KIELANQLRSELMTINQQPEENVRSTTPLLRSI-PAYPELNHGPPHDYFK 111
           KIEL  QLRS+LMTINQ   E+VRS    L+ I   +PE  HG   D  K
Sbjct: 194 KIELTEQLRSQLMTINQGDAESVRSYFLRLQWILKKWPE--HGLSDDLLK 241

The following BLAST results are available for this feature:
BLAST of Lcy04g001630 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g001630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A6K9V23.3e-2668.24Retrotrans_gag domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_... [more]
A0A2C9W9V91.2e-2568.24Retrotrans_gag domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_0... [more]
A0A061DJI42.1e-2559.09Retrotrans_gag domain-containing protein OS=Theobroma cacao OX=3641 GN=TCM_00170... [more]
A0A7N2R9A72.1e-2570.59Retrotrans_gag domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
W9R9S06.2e-2560.00Retrotrans_gag domain-containing protein OS=Morus notabilis OX=981085 GN=L484_00... [more]
BLAST of Lcy04g001630 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6604769.17.5e-3373.58hypothetical protein SDJN03_02086, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF2285592.16.8e-2668.24hypothetical protein GH714_005688 [Hevea brasiliensis][more]
OAY55424.12.6e-2568.24hypothetical protein MANES_03G153000v8 [Manihot esculenta][more]
EOX92844.14.4e-2559.09Uncharacterized protein TCM_001704 [Theobroma cacao][more]
EXB78111.11.3e-2460.00hypothetical protein L484_004813 [Morus notabilis][more]
BLAST of Lcy04g001630 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 24..85
e-value: 4.8E-5
score: 23.5
NoneNo IPR availablePANTHERPTHR33223FAMILY NOT NAMEDcoord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g001630.1Lcy04g001630.1mRNA