Lcy04g001510 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g001510
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptioncysteine proteinase inhibitor A-like
LocationChr04: 7339027 .. 7339668 (+)
RNA-Seq ExpressionLcy04g001510
SyntenyLcy04g001510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTCACATCCTTAGGAAGTATCTCAAAAACTATCTAGCAAAGGTATTGCAATGAGTTGTGAGGGAGGAATTCTGAGTTCTCCTGAACCGATTAAGGATATCGATAATCCATATGTGCAAGAAATCGGAAGGTTTGCAGTGAAGGAAAGTGGGGAAAATCTGAAGTTCAAGCGCGTGTTGAATGGTCTGAAACGGACGGCTCTTCTACCTGGGTTTCGTGAAAAGAGAGTGTTTCGTCTTGTGTTGGAGGCCGAAAATGCAAGCCAAATTAATTGGACCTATGAGACTGAGGTGGAGGAGTGTGACGGTTTGGGTTCCCTGCCTATGATTCGTGTCCTCAAATCTTTCCAGTCTGTCCTCAACTATTAGTAGTAATATCAGACTCCTACCTCTCTAGTGAGTATATGCTGATATAAGTTAAAAATAAAATAATAAAAAATGGTTATCTATTATTTGGTCTTTGTGCATGCTGCTTTTCTCTATCTTTCTATTTAATTTCTCTCCAATTTTGTCAACTCCATTGCAGTTTAAAAAGTGATTAGGAGAGAATCTTAGGGTCCGTTTGGTAACGTTCTCGTTTCTTGTTTCCGTTTCTTCATTTTTAATAAAGAAAAATAGAATTTCATGACCCTAACATTTATA

mRNA sequence

AATTCACATCCTTAGGAAGTATCTCAAAAACTATCTAGCAAAGGTATTGCAATGAGTTGTGAGGGAGGAATTCTGAGTTCTCCTGAACCGATTAAGGATATCGATAATCCATATGTGCAAGAAATCGGAAGGTTTGCAGTGAAGGAAAGTGGGGAAAATCTGAAGTTCAAGCGCGTGTTGAATGGTCTGAAACGGACGGCTCTTCTACCTGGGTTTCGTGAAAAGAGAGTGTTTCGTCTTGTGTTGGAGGCCGAAAATGCAAGCCAAATTAATTGGACCTATGAGACTGAGGTGGAGGAGTGTGACGGTTTGGGTTCCCTGCCTATGATTCGTGTCCTCAAATCTTTCCAGTCTGTCCTCAACTATTAGTAGTAATATCAGACTCCTACCTCTCTAGTGAGTATATGCTGATATAAGTTAAAAATAAAATAATAAAAAATGGTTATCTATTATTTGGTCTTTGTGCATGCTGCTTTTCTCTATCTTTCTATTTAATTTCTCTCCAATTTTGTCAACTCCATTGCAGTTTAAAAAGTGATTAGGAGAGAATCTTAGGGTCCGTTTGGTAACGTTCTCGTTTCTTGTTTCCGTTTCTTCATTTTTAATAAAGAAAAATAGAATTTCATGACCCTAACATTTATA

Coding sequence (CDS)

ATGAGTTGTGAGGGAGGAATTCTGAGTTCTCCTGAACCGATTAAGGATATCGATAATCCATATGTGCAAGAAATCGGAAGGTTTGCAGTGAAGGAAAGTGGGGAAAATCTGAAGTTCAAGCGCGTGTTGAATGGTCTGAAACGGACGGCTCTTCTACCTGGGTTTCGTGAAAAGAGAGTGTTTCGTCTTGTGTTGGAGGCCGAAAATGCAAGCCAAATTAATTGGACCTATGAGACTGAGGTGGAGGAGTGTGACGGTTTGGGTTCCCTGCCTATGATTCGTGTCCTCAAATCTTTCCAGTCTGTCCTCAACTATTAG

Protein sequence

MSCEGGILSSPEPIKDIDNPYVQEIGRFAVKESGENLKFKRVLNGLKRTALLPGFREKRVFRLVLEAENASQINWTYETEVEECDGLGSLPMIRVLKSFQSVLNY
Homology
BLAST of Lcy04g001510 vs. ExPASy TrEMBL
Match: A0A0A0KZ98 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508510 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.1e-12
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 0

Query: 12  EPIKDIDNPYVQEIGRFAV-----KESGENLKFKRVLNGLKRTALL-PGFREKRVFRLVL 71
           +PI DI++P+VQ +G  AV     K SGE LKF RV+NGLK    + PGF E  ++ LVL
Sbjct: 11  KPIIDINDPHVQALGELAVENLYSKNSGEKLKFVRVVNGLKSDKYIGPGFTEVILYHLVL 70

Query: 72  EAENASQINWTYETEVEECDGLGSLPMIR-VLKSFQSVLNY 106
           EA+   +INWTY T++EE  G     +IR V  SF+ VL Y
Sbjct: 71  EAKTNEEINWTYATKLEEVSG----GLIRHVFLSFEPVLPY 107

BLAST of Lcy04g001510 vs. ExPASy TrEMBL
Match: A0A0A0L191 (Cystatin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G508520 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.0e-10
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 0

Query: 12  EPIKDIDNPYVQEIGRFAVKE-----SGENLKFKRVLNGLKRTALL-PGFREKRVFRLVL 71
           +PI DI++P+VQ IG+ AV++      GE LKF RV+NGLK    + PGF E  ++ LVL
Sbjct: 11  KPIIDINDPHVQIIGKLAVEDHDSHNPGEKLKFVRVVNGLKSDKYIGPGFTEVILYHLVL 70

Query: 72  EAENASQINWTYETEVEECDGLGSLPMIR-VLKSFQSVLNY 106
           EA+   +INWTY T++E+   + S  +IR V  SF+ VL Y
Sbjct: 71  EAKTNEEINWTYATKLEK---VYSGCLIRHVFLSFEPVLPY 108

BLAST of Lcy04g001510 vs. ExPASy TrEMBL
Match: A0A5A7TJK0 (Cysteine proteinase inhibitor A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001140 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 0

Query: 7   ILSSPEPIKDI-DNPYVQEIGRFAV----KESGENLKFKRVLNGLKRTALLPGFREKRV- 66
           I+S+ +PI+DI DN  VQ++G   V    K++GENLKF RV+NGL  +   P      V 
Sbjct: 3   IMSAFKPIEDINDNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGGVL 62

Query: 67  FRLVLEAENASQINWTYETEVEECDGLGSLPMIRVLKSFQS---VLNY 106
           + LVLEA   S+INWTY+  V +   +   P   +L SFQS   VL Y
Sbjct: 63  YELVLEAITTSKINWTYKARVSKSKAI--TPPFHMLYSFQSFKPVLEY 108

BLAST of Lcy04g001510 vs. ExPASy TrEMBL
Match: A0A1S3B5B9 (cysteine proteinase inhibitor A-like OS=Cucumis melo OX=3656 GN=LOC103486185 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 0

Query: 7   ILSSPEPIKDI-DNPYVQEIGRFAV----KESGENLKFKRVLNGLKRTALLPGFREKRV- 66
           I+S+ +PI+DI DN  VQ++G   V    K++GENLKF RV+NGL  +   P      V 
Sbjct: 3   IMSAFKPIEDINDNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGGVL 62

Query: 67  FRLVLEAENASQINWTYETEVEECDGLGSLPMIRVLKSFQS---VLNY 106
           + LVLEA   S+INWTY+  V +   +   P   +L SFQS   VL Y
Sbjct: 63  YELVLEAITTSKINWTYKARVSKSKAI--TPPFHMLYSFQSFKPVLEY 108

BLAST of Lcy04g001510 vs. ExPASy TrEMBL
Match: A0A5A7TFU6 (Cystatin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00010 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.8e-06
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 1  MSCEGGILSSPEPIKDIDNPYVQEIGRFAVK----ESGENLKFKRVLNGLKRTALLPGFR 60
          MS E      P PIKD+D+  +Q +G FAV+    E GENL+F +V+NG ++     G R
Sbjct: 1  MSSEDLSNLDPVPIKDVDSEEIQGLGEFAVREHNEEKGENLEFVKVINGFEQ-----GRR 60

Query: 61 EKR-VFRLVLEAENASQINWTYETEV 82
            R +F +VL A+N + I WTY+ +V
Sbjct: 61 GVRIIFTIVLSAKNCNGIIWTYKAKV 81

BLAST of Lcy04g001510 vs. NCBI nr
Match: KGN54823.1 (hypothetical protein Csa_012607 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-12
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 0

Query: 12  EPIKDIDNPYVQEIGRFAV-----KESGENLKFKRVLNGLKRTALL-PGFREKRVFRLVL 71
           +PI DI++P+VQ +G  AV     K SGE LKF RV+NGLK    + PGF E  ++ LVL
Sbjct: 11  KPIIDINDPHVQALGELAVENLYSKNSGEKLKFVRVVNGLKSDKYIGPGFTEVILYHLVL 70

Query: 72  EAENASQINWTYETEVEECDGLGSLPMIR-VLKSFQSVLNY 106
           EA+   +INWTY T++EE  G     +IR V  SF+ VL Y
Sbjct: 71  EAKTNEEINWTYATKLEEVSG----GLIRHVFLSFEPVLPY 107

BLAST of Lcy04g001510 vs. NCBI nr
Match: KAE8649716.1 (hypothetical protein Csa_012476 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-11
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 0

Query: 12  EPIKDIDNPYVQEIGRFAV----KESGENLKFKRVLNGLKRTALLPGFREK------RVF 71
           EPIKDI++P VQEIG   V    K++GENLKF RV+NG     L  GF +        V+
Sbjct: 8   EPIKDINDPQVQEIGNLTVDDHNKKTGENLKFVRVVNG-----LFAGFVDPFSPLGGTVY 67

Query: 72  RLVLEAENASQINWTYETEVEECDGLGSLPMIRVLKSFQSVLNY 106
            LVLEA NA +INWTY+ +V     +  L ++   +SF+ VL Y
Sbjct: 68  ELVLEAINAGKINWTYKVKVSASTTIRPLGVVYNFQSFEPVLQY 106

BLAST of Lcy04g001510 vs. NCBI nr
Match: XP_008442277.1 (PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo] >KAA0041897.1 cysteine proteinase inhibitor A-like [Cucumis melo var. makuwa] >TYK05422.1 cysteine proteinase inhibitor A-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-07
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 0

Query: 7   ILSSPEPIKDI-DNPYVQEIGRFAV----KESGENLKFKRVLNGLKRTALLPGFREKRV- 66
           I+S+ +PI+DI DN  VQ++G   V    K++GENLKF RV+NGL  +   P      V 
Sbjct: 3   IMSAFKPIEDINDNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGGVL 62

Query: 67  FRLVLEAENASQINWTYETEVEECDGLGSLPMIRVLKSFQS---VLNY 106
           + LVLEA   S+INWTY+  V +   +   P   +L SFQS   VL Y
Sbjct: 63  YELVLEAITTSKINWTYKARVSKSKAI--TPPFHMLYSFQSFKPVLEY 108

BLAST of Lcy04g001510 vs. NCBI nr
Match: XP_038897049.1 (cysteine proteinase inhibitor 5-like [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 0

Query: 12 EPIKDIDNPYVQEIGRFAV----KESGENLKFKRVLNGLKRTALLPGFREKRVFRLVLEA 71
          EPI++I++PYVQE+GRF+V    K++G NLKF RV+NG K+  ++ G      +RL +EA
Sbjct: 28 EPIENIEDPYVQEMGRFSVMEHNKQTGANLKFIRVVNGEKQ--VVAGIN----YRLRIEA 87

Query: 72 ENASQINWTYETEVEE 84
           N   + WTYE  V +
Sbjct: 88 RNEMNLVWTYEAMVND 97

BLAST of Lcy04g001510 vs. NCBI nr
Match: XP_038891087.1 (uncharacterized protein LOC120080488 isoform X2 [Benincasa hispida])

HSP 1 Score: 61.2 bits (147), Expect = 6.0e-06
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 11 PEPIKDIDNPYVQEIGRFAVKE----SGENLKFKRVLNGLKRTALLPGFREKR-VFRLVL 70
          P PIKD+ +  +Q  G FAV+E    +GE L+F+RV+NGL++     G R  R VF LVL
Sbjct: 14 PVPIKDVYSEEIQGCGSFAVREHNETTGEKLEFERVINGLEQ-----GRRSIRIVFTLVL 73

Query: 71 EAENASQINWTYETEVEECDG 87
           A+N+  INWTY T  E+C G
Sbjct: 74 VAKNSCGINWTY-TAKEKCVG 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZ982.1e-1248.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G508510 PE=4 SV=1[more]
A0A0A0L1912.0e-1046.53Cystatin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G508520 PE... [more]
A0A5A7TJK02.0e-0743.52Cysteine proteinase inhibitor A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3B5B92.0e-0743.52cysteine proteinase inhibitor A-like OS=Cucumis melo OX=3656 GN=LOC103486185 PE=... [more]
A0A5A7TFU63.8e-0641.86Cystatin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00010 PE=4 S... [more]
Match NameE-valueIdentityDescription
KGN54823.14.3e-1248.51hypothetical protein Csa_012607 [Cucumis sativus][more]
KAE8649716.12.1e-1145.19hypothetical protein Csa_012476 [Cucumis sativus][more]
XP_008442277.14.2e-0743.52PREDICTED: cysteine proteinase inhibitor A-like [Cucumis melo] >KAA0041897.1 cys... [more]
XP_038897049.11.2e-0646.05cysteine proteinase inhibitor 5-like [Benincasa hispida][more]
XP_038891087.16.0e-0648.15uncharacterized protein LOC120080488 isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000010Cystatin domainPFAMPF16845SQAPIcoord: 14..101
e-value: 3.4E-8
score: 33.7
NoneNo IPR availableGENE3D3.10.450.10coord: 5..102
e-value: 1.3E-10
score: 43.3
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 14..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g001510.1Lcy04g001510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity