Lcy04g001490 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g001490
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionBromo domain-containing protein
LocationChr04: 7324160 .. 7324444 (-)
RNA-Seq ExpressionLcy04g001490
SyntenyLcy04g001490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGAGGATAAGATTTTTGTGCAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGTGTAGGTGTTACTCCTTCTGAGCTATTTGGATCATCTTCTAATGTATGTGATCTTGAGCGTCGTCTTAACGAGTCTGAACAACCTCTTCAAGAATCTGAACAACAAGGAAAAGTCGAGGTACTAGCACTCAAAGATCAAATTGTCGAATTAGAAAATCGTTTTGAGGATAAATTTCAAACAATGATGACAGAGATGCGTAAACAATTTGCTAAATAA

mRNA sequence

ATGAACGAGGATAAGATTTTTGTGCAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGTGTAGGTGTTACTCCTTCTGAGCTATTTGGATCATCTTCTAATGTATGTGATCTTGAGCGTCGTCTTAACGAGTCTGAACAACCTCTTCAAGAATCTGAACAACAAGGAAAAGTCGAGGTACTAGCACTCAAAGATCAAATTGTCGAATTAGAAAATCGTTTTGAGGATAAATTTCAAACAATGATGACAGAGATGCGTAAACAATTTGCTAAATAA

Coding sequence (CDS)

ATGAACGAGGATAAGATTTTTGTGCAAGTTTTTGGACCAGAGAAACATGGACGTGTTCGTGGTTATGGTGTAGGTGTTACTCCTTCTGAGCTATTTGGATCATCTTCTAATGTATGTGATCTTGAGCGTCGTCTTAACGAGTCTGAACAACCTCTTCAAGAATCTGAACAACAAGGAAAAGTCGAGGTACTAGCACTCAAAGATCAAATTGTCGAATTAGAAAATCGTTTTGAGGATAAATTTCAAACAATGATGACAGAGATGCGTAAACAATTTGCTAAATAA

Protein sequence

MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVCDLERRLNESEQPLQESEQQGKVEVLALKDQIVELENRFEDKFQTMMTEMRKQFAK
Homology
BLAST of Lcy04g001490 vs. ExPASy TrEMBL
Match: A0A6J5VGW3 (Bromo domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45002 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 1   MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFG----SSSNVCDLERRLNESEQPLQESE 60
           M ED+IFV+VFGPE+  RVRGYG GVTP EL+G    SSS V +L R+L ES+Q  +ESE
Sbjct: 486 MTEDEIFVKVFGPERSSRVRGYGNGVTPKELWGPSSSSSSTVSELRRQLEESKQRQEESE 545

Query: 61  QQGKVEVLALKDQIVELE-------NRFEDKFQTMMTEM 89
           Q+   EV  LK+Q+  +E       NRFE     +M+ M
Sbjct: 546 QRSAAEVQGLKEQLGRVEGLLSVQMNRFEGLLVQLMSHM 584

BLAST of Lcy04g001490 vs. ExPASy TrEMBL
Match: A0A2N9HCP8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40018 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 44/92 (47.83%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 1    MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSN-VCDLERRLNESEQPLQESEQQG 60
            M+ED++FV+VFGPE+HGRVRGYG GVT ++L+GSSS+ + DLE+RL ESEQ   E+  + 
Sbjct: 996  MSEDQMFVEVFGPERHGRVRGYGAGVTATKLWGSSSSKINDLEKRLQESEQMRLEANAKA 1055

Query: 61   KVEVLALKDQIVELENRFEDKFQTMMTEMRKQ 92
              +V  L++Q+++L++  E++     T+M +Q
Sbjct: 1056 NAKVELLEEQVIQLKDLLEER----STQMEQQ 1083

BLAST of Lcy04g001490 vs. ExPASy TrEMBL
Match: A0A2N9GUC6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30960 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 44/92 (47.83%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 1   MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSN-VCDLERRLNESEQPLQESEQQG 60
           M+ED++FV+VFGPE+HGRVRGYG GVT ++L+GSSS+ + DLE+RL ESEQ   E+  + 
Sbjct: 17  MSEDQMFVEVFGPERHGRVRGYGAGVTATKLWGSSSSKINDLEKRLQESEQMRLEANAKA 76

Query: 61  KVEVLALKDQIVELENRFEDKFQTMMTEMRKQ 92
             +V  L++Q+++L++  E++     T+M +Q
Sbjct: 77  NAKVELLEEQVIQLKDLLEER----STQMEQQ 104

BLAST of Lcy04g001490 vs. ExPASy TrEMBL
Match: A0A2N9HCE0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37447 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.7e-13
Identity = 44/92 (47.83%), Postives = 69/92 (75.00%), Query Frame = 0

Query: 1   MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSN-VCDLERRLNESEQPLQESEQQG 60
           M+ED++FV+VFGPE+HGRVRGYG GVT ++L+GSSS+ + DLE+RL ESEQ   E+  + 
Sbjct: 282 MSEDQMFVEVFGPERHGRVRGYGAGVTATKLWGSSSSKINDLEKRLQESEQMRLEANAKA 341

Query: 61  KVEVLALKDQIVELENRFEDKFQTMMTEMRKQ 92
             +V  L++Q+++L++  E++     T+M +Q
Sbjct: 342 NAKVELLEEQVIQLKDLLEER----STQMEQQ 369

BLAST of Lcy04g001490 vs. ExPASy TrEMBL
Match: A0A5A7U8E9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00340 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.9e-13
Identity = 44/56 (78.57%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVCDLERRLNESEQPLQESE 57
           MNED IFVQVFGPEKHG VRGYGVGVTP ELF SSS V DLE  LNE E  L ESE
Sbjct: 60  MNEDDIFVQVFGPEKHGCVRGYGVGVTPYELFRSSSKVHDLEHGLNEFELRLHESE 115

BLAST of Lcy04g001490 vs. NCBI nr
Match: XP_038904040.1 (uncharacterized protein LOC120090445 [Benincasa hispida])

HSP 1 Score: 127.1 bits (318), Expect = 8.0e-26
Identity = 70/99 (70.71%), Postives = 76/99 (76.77%), Query Frame = 0

Query: 1   MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVCDLERRLNESEQPLQESEQQGK 60
           MNED+ FV+VFGPEKHG V GYGVGVTPSELFGSSS + D ERRLNESEQ LQE EQQ K
Sbjct: 81  MNEDETFVRVFGPEKHGHVHGYGVGVTPSELFGSSSTIRDHERRLNESEQRLQEFEQQRK 140

Query: 61  -------VEVLALKDQIVELENRFEDKFQTMMTEMRKQF 93
                  +EV  LK QI ELENRFED+FQ MM EM K+F
Sbjct: 141 EFEQQRELEVEVLKRQISELENRFEDRFQKMMAEMCKKF 179

BLAST of Lcy04g001490 vs. NCBI nr
Match: CAB4287154.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 85.1 bits (209), Expect = 3.5e-13
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 0

Query: 1   MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFG----SSSNVCDLERRLNESEQPLQESE 60
           M ED+IFV+VFGPE+  RVRGYG GVTP EL+G    SSS V +L R+L ES+Q  +ESE
Sbjct: 486 MTEDEIFVKVFGPERSSRVRGYGNGVTPKELWGPSSSSSSTVSELRRQLEESKQRQEESE 545

Query: 61  QQGKVEVLALKDQIVELE-------NRFEDKFQTMMTEM 89
           Q+   EV  LK+Q+  +E       NRFE     +M+ M
Sbjct: 546 QRSAAEVQGLKEQLGRVEGLLSVQMNRFEGLLVQLMSHM 584

BLAST of Lcy04g001490 vs. NCBI nr
Match: XP_023893229.1 (uncharacterized protein LOC112005206 [Quercus suber])

HSP 1 Score: 85.1 bits (209), Expect = 3.5e-13
Identity = 41/91 (45.05%), Postives = 67/91 (73.63%), Query Frame = 0

Query: 1   MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVC-DLERRLNESEQPLQESEQQG 60
           M++D++F +VFGPE+HGRVRGYG G+TP++L GSSS++  DLE+RL ESEQ   E++ + 
Sbjct: 363 MSQDQMFTEVFGPERHGRVRGYGAGITPTKLKGSSSSIMHDLEKRLQESEQKRVEADAEA 422

Query: 61  KVEVLALKDQIVELENRFEDKFQTMMTEMRK 91
             +V +LK ++ +L++  E +   M+ + R+
Sbjct: 423 NAKVESLKGEVDQLKSVLEQQASQMVEQSRR 453

BLAST of Lcy04g001490 vs. NCBI nr
Match: XP_023907200.1 (uncharacterized protein LOC112018907 [Quercus suber] >XP_023907201.1 uncharacterized protein LOC112018907 [Quercus suber])

HSP 1 Score: 85.1 bits (209), Expect = 3.5e-13
Identity = 41/91 (45.05%), Postives = 67/91 (73.63%), Query Frame = 0

Query: 1   MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVC-DLERRLNESEQPLQESEQQG 60
           M++D++F +VFGPE+HGRVRGYG G+TP++L GSSS++  DLE+RL ESEQ   E++ + 
Sbjct: 363 MSQDQMFTEVFGPERHGRVRGYGAGITPTKLKGSSSSIMHDLEKRLQESEQKRVEADAEA 422

Query: 61  KVEVLALKDQIVELENRFEDKFQTMMTEMRK 91
             +V +LK ++ +L++  E +   M+ + R+
Sbjct: 423 NAKVESLKGEVDQLKSVLEQQASQMVEQSRR 453

BLAST of Lcy04g001490 vs. NCBI nr
Match: KAA0049895.1 (uncharacterized protein E6C27_scaffold13G00470 [Cucumis melo var. makuwa] >TYK07633.1 uncharacterized protein E5676_scaffold105G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 6.0e-13
Identity = 44/56 (78.57%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 1   MNEDKIFVQVFGPEKHGRVRGYGVGVTPSELFGSSSNVCDLERRLNESEQPLQESE 57
           MNED IFVQVFGPEKHG VRGYGVGVTP ELF SSS V DLE  LNE E  L ESE
Sbjct: 60  MNEDDIFVQVFGPEKHGCVRGYGVGVTPYELFRSSSKVHDLEHGLNEFELRLHESE 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J5VGW31.7e-1350.51Bromo domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS4500... [more]
A0A2N9HCP81.7e-1347.83Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40018 PE=4 SV=1[more]
A0A2N9GUC61.7e-1347.83Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30960 PE=4 SV=1[more]
A0A2N9HCE01.7e-1347.83Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37447 PE=4 SV=1[more]
A0A5A7U8E92.9e-1378.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_038904040.18.0e-2670.71uncharacterized protein LOC120090445 [Benincasa hispida][more]
CAB4287154.13.5e-1350.51unnamed protein product [Prunus armeniaca][more]
XP_023893229.13.5e-1345.05uncharacterized protein LOC112005206 [Quercus suber][more]
XP_023907200.13.5e-1345.05uncharacterized protein LOC112018907 [Quercus suber] >XP_023907201.1 uncharacter... [more]
KAA0049895.16.0e-1378.57uncharacterized protein E6C27_scaffold13G00470 [Cucumis melo var. makuwa] >TYK07... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g001490.1Lcy04g001490.1mRNA