Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAGCATGGAATTTTCTACAAGATGTGAAGAAAAGGAAGCCAGATACCAAAAAAATTTTATGTCCGTGCAAAGAATGTAGAAATATGAGACATTGTGATCTTCAAATTGTATATGAGCATTTAGTCATTAAGGGCATAGATCCTACATACAATGTGTGGTATCATCACGGAGAAGTATGTTATCAGGGGGATGAAGTTGAGAATGAACTTGAGGATGCTTTTATGTTTGAAGCAACTAACTTTTATAAGAGCACATTTATGGGATATGAGGACAATATTGATCCTCTTATATCAACGAATCAGAAAAACTTTTCTCAGAATGTGCAAGAGGCAAACACTCCATTGTATGAAAGATGCACAAAATACACAAAGATGTCAGCAGTTGTAGTATTATATAAACTTAAAACTTTCAATGGTTGGTCAGATACAAGTTTCACTAGTCTTTTGGAGTTGTTGCATGACATGCTCCCAACAGATAATGTTATCCCAAGATCCATTTATGAAGTTAGAAAATTATTCAAGACATTTGATTTAGGCTACCAAAAAATTCATGCATGTGTTAAGGATTGTTGCCTATTTAGAAATGAGAATGAAAAGTTAGAAAATTGCCCTCACTGTGCGACTTAA
mRNA sequence
ATGGAAGGAGCATGGAATTTTCTACAAGATGTGAAGAAAAGGAAGCCAGATACCAAAAAAATTTTATGTCCGTGCAAAGAATGTAGAAATATGAGACATTGTGATCTTCAAATTGTATATGAGCATTTAGTCATTAAGGGCATAGATCCTACATACAATGTGTGGTATCATCACGGAGAAGTATGTTATCAGGGGGATGAAGTTGAGAATGAACTTGAGGATGCTTTTATGTTTGAAGCAACTAACTTTTATAAGAGCACATTTATGGGATATGAGGACAATATTGATCCTCTTATATCAACGAATCAGAAAAACTTTTCTCAGAATGTGCAAGAGGCAAACACTCCATTGTATGAAAGATGCACAAAATACACAAAGATGTCAGCAGTTGTAGTATTATATAAACTTAAAACTTTCAATGGTTGGTCAGATACAAGTTTCACTAGTCTTTTGGAGTTGTTGCATGACATGCTCCCAACAGATAATGTTATCCCAAGATCCATTTATGAAGTTAGAAAATTATTCAAGACATTTGATTTAGGCTACCAAAAAATTCATGCATGTGTTAAGGATTGTTGCCTATTTAGAAATGAGAATGAAAAGTTAGAAAATTGCCCTCACTGTGCGACTTAA
Coding sequence (CDS)
ATGGAAGGAGCATGGAATTTTCTACAAGATGTGAAGAAAAGGAAGCCAGATACCAAAAAAATTTTATGTCCGTGCAAAGAATGTAGAAATATGAGACATTGTGATCTTCAAATTGTATATGAGCATTTAGTCATTAAGGGCATAGATCCTACATACAATGTGTGGTATCATCACGGAGAAGTATGTTATCAGGGGGATGAAGTTGAGAATGAACTTGAGGATGCTTTTATGTTTGAAGCAACTAACTTTTATAAGAGCACATTTATGGGATATGAGGACAATATTGATCCTCTTATATCAACGAATCAGAAAAACTTTTCTCAGAATGTGCAAGAGGCAAACACTCCATTGTATGAAAGATGCACAAAATACACAAAGATGTCAGCAGTTGTAGTATTATATAAACTTAAAACTTTCAATGGTTGGTCAGATACAAGTTTCACTAGTCTTTTGGAGTTGTTGCATGACATGCTCCCAACAGATAATGTTATCCCAAGATCCATTTATGAAGTTAGAAAATTATTCAAGACATTTGATTTAGGCTACCAAAAAATTCATGCATGTGTTAAGGATTGTTGCCTATTTAGAAATGAGAATGAAAAGTTAGAAAATTGCCCTCACTGTGCGACTTAA
Protein sequence
MEGAWNFLQDVKKRKPDTKKILCPCKECRNMRHCDLQIVYEHLVIKGIDPTYNVWYHHGEVCYQGDEVENELEDAFMFEATNFYKSTFMGYEDNIDPLISTNQKNFSQNVQEANTPLYERCTKYTKMSAVVVLYKLKTFNGWSDTSFTSLLELLHDMLPTDNVIPRSIYEVRKLFKTFDLGYQKIHACVKDCCLFRNENEKLENCPHCAT
Homology
BLAST of Lcy04g001400 vs. ExPASy TrEMBL
Match:
A0A5D3DLF1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001200 PE=4 SV=1)
HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79
Identity = 145/181 (80.11%), Postives = 158/181 (87.29%), Query Frame = 0
Query: 31 MRHCDLQIVYEHLVIKGIDPTYNVWYHHGEVCYQGDEVENELEDAFMFEATNFYKSTFMG 90
M HCD QI+YEHLVIKG+DPTYN WYHHGEVC +GDE+ENE++D+FM EATNFY+ST+MG
Sbjct: 1 MAHCDFQIIYEHLVIKGMDPTYNFWYHHGEVC-EGDEMENEVDDSFMCEATNFYESTYMG 60
Query: 91 YEDNI-DPLISTNQKNFSQNVQEANTPLYERCTKYTKMSAVVVLYKLKTFNGWSDTSFTS 150
ED I D S + FSQ V+EANTPLY CTKYTKMSAVV LYKLKTFNGWSDTSFTS
Sbjct: 61 KEDIIHDNSTSRKENKFSQKVEEANTPLYGGCTKYTKMSAVVALYKLKTFNGWSDTSFTS 120
Query: 151 LLELLHDMLPTDNVIPRSIYEVRKLFKTFDLGYQKIHACVKDCCLFRNENEKLENCPHCA 210
LL LLHDMLP DNVI RSIYEVRKLFK FDLGYQKIHACVKDCCLFRNENEKLE+CPHCA
Sbjct: 121 LLGLLHDMLPMDNVISRSIYEVRKLFKEFDLGYQKIHACVKDCCLFRNENEKLESCPHCA 180
BLAST of Lcy04g001400 vs. ExPASy TrEMBL
Match:
A0A5D3C984 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00690 PE=4 SV=1)
HSP 1 Score: 305.8 bits (782), Expect = 1.4e-79
Identity = 145/181 (80.11%), Postives = 158/181 (87.29%), Query Frame = 0
Query: 31 MRHCDLQIVYEHLVIKGIDPTYNVWYHHGEVCYQGDEVENELEDAFMFEATNFYKSTFMG 90
M HCD QI+YEHLVIKG+DPTYN WYHHGEVC +GDE+ENE++D+FM EATNFY+ST+MG
Sbjct: 1 MAHCDFQIIYEHLVIKGMDPTYNFWYHHGEVC-EGDEMENEVDDSFMCEATNFYESTYMG 60
Query: 91 YEDNI-DPLISTNQKNFSQNVQEANTPLYERCTKYTKMSAVVVLYKLKTFNGWSDTSFTS 150
ED I D S + FSQ V+EANTPLY CTKYTKMSAVV LYKLKTFNGWSDTSFTS
Sbjct: 61 KEDIIHDNSTSRKENKFSQKVEEANTPLYGGCTKYTKMSAVVALYKLKTFNGWSDTSFTS 120
Query: 151 LLELLHDMLPTDNVIPRSIYEVRKLFKTFDLGYQKIHACVKDCCLFRNENEKLENCPHCA 210
LL LLHDMLP DNVI RSIYEVRKLFK FDLGYQKIHACVKDCCLFRNENEKLE+CPHCA
Sbjct: 121 LLGLLHDMLPMDNVISRSIYEVRKLFKEFDLGYQKIHACVKDCCLFRNENEKLESCPHCA 180
BLAST of Lcy04g001400 vs. ExPASy TrEMBL
Match:
A0A1S8ADG1 (Transpos_assoc domain-containing protein OS=Citrus limon OX=2708 PE=4 SV=1)
HSP 1 Score: 233.0 bits (593), Expect = 1.1e-57
Identity = 106/208 (50.96%), Postives = 143/208 (68.75%), Query Frame = 0
Query: 1 MEGAWNFLQDVKKRKPDTKKILCPCKECRNMRHCDLQIVYEHLVIKGIDPTYNVWYHHGE 60
M+ A NF+ K+ + KILCPCK+CRN+ H ++ VYEHL+ KG+D Y W+HHGE
Sbjct: 1 MQAASNFVNLAKRNAGNVDKILCPCKDCRNLSHHLVETVYEHLIFKGMDLAYTTWFHHGE 60
Query: 61 VCYQGDEVENELEDAFMFEATNFYKSTFMGYEDNIDPLISTNQKNFSQNVQEANTPLYER 120
++ ++ M + N Y + +M ED + P + ++ +F+Q +++A TPLY
Sbjct: 61 KL----SIDENPKEVKMSDTHNLYANAYMENEDYVTPALGKDE-DFAQKLEDAETPLYPS 120
Query: 121 CTKYTKMSAVVVLYKLKTFNGWSDTSFTSLLELLHDMLPTDNVIPRSIYEVRKLFKTFDL 180
CT+YTK+SA+V LYK K N WS+ SF LLELLHDMLP DNV+ RS+Y VRKL KTFDL
Sbjct: 121 CTRYTKLSAIVALYKHKAVNKWSNKSFDGLLELLHDMLPVDNVLLRSVYLVRKLLKTFDL 180
Query: 181 GYQKIHACVKDCCLFRNENEKLENCPHC 209
GY+KIHACV DCCLFR ENE +++CP C
Sbjct: 181 GYEKIHACVNDCCLFRRENENMDSCPTC 203
BLAST of Lcy04g001400 vs. ExPASy TrEMBL
Match:
A0A803PSE2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 225.7 bits (574), Expect = 1.8e-55
Identity = 101/209 (48.33%), Postives = 142/209 (67.94%), Query Frame = 0
Query: 2 EGAWNFLQDVKKRKPDTKKILCPCKECRNMRHCDLQIVYEHLVIKGIDPTYNVWYHHGEV 61
EGA +F++ ++K +K+LCPCK CRN+ H + ++YEHLVI GIDPTY +W+HHGE
Sbjct: 66 EGARSFVETIEKEANYPEKLLCPCKFCRNLSHQKVNLLYEHLVINGIDPTYTIWFHHGEE 125
Query: 62 CYQGDEVENELEDAFMFEATNFYKSTFMGYEDNIDPLISTNQKNFSQNVQEANTPLYERC 121
+ D++ E+ F+A N + +T + D+ +P + NF + +++A LY +C
Sbjct: 126 APRSDDI----EEMNSFDAFNLFSATNIDVCDSEEP-VEGPDDNFIKKLEDAQIALYPQC 185
Query: 122 TKYTKMSAVVVLYKLKTFNGWSDTSFTSLLELLHDMLPTDNVIPRSIYEVRKLFKTFDLG 181
T YTK+SA++ LYK+KT NGWSD SF +L L HDMLP DN + +S + RK +TFDLG
Sbjct: 186 TNYTKLSAIIALYKVKTTNGWSDKSFDEILNLFHDMLPCDNALLKSTHSARKYLQTFDLG 245
Query: 182 YQKIHACVKDCCLFRNENEKLENCPHCAT 211
Y+KIHACV +CCLFR + EKLE CP C T
Sbjct: 246 YEKIHACVNNCCLFRKDKEKLEECPTCGT 269
BLAST of Lcy04g001400 vs. ExPASy TrEMBL
Match:
A0A5D3DCM2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00300 PE=4 SV=1)
HSP 1 Score: 222.6 bits (566), Expect = 1.5e-54
Identity = 108/141 (76.60%), Postives = 119/141 (84.40%), Query Frame = 0
Query: 31 MRHCDLQIVYEHLVIKGIDPTYNVWYHHGEVCYQGDEVENELEDAFMFEATNFYKSTFMG 90
M HCD QI+YEHLVIKG+DPTYN WYHHGEVC +GDE+ENE++D+FM EATNFY+ST+MG
Sbjct: 1 MAHCDFQIIYEHLVIKGMDPTYNFWYHHGEVC-EGDEMENEVDDSFMCEATNFYESTYMG 60
Query: 91 YEDNI-DPLISTNQKNFSQNVQEANTPLYERCTKYTKMSAVVVLYKLKTFNGWSDTSFTS 150
ED I D S + FSQ V+EANTPLY CTKYTKMSAVV LYKLKTFNGWSDTSFTS
Sbjct: 61 KEDIIHDNSTSRKENKFSQKVEEANTPLYGGCTKYTKMSAVVALYKLKTFNGWSDTSFTS 120
Query: 151 LLELLHDMLPTDNVIPRSIYE 171
LL LLHDMLP DNVI RSIYE
Sbjct: 121 LLGLLHDMLPMDNVISRSIYE 140
BLAST of Lcy04g001400 vs. NCBI nr
Match:
TYK08453.1 (uncharacterized protein E5676_scaffold654G00690 [Cucumis melo var. makuwa])
HSP 1 Score: 305.8 bits (782), Expect = 2.8e-79
Identity = 145/181 (80.11%), Postives = 158/181 (87.29%), Query Frame = 0
Query: 31 MRHCDLQIVYEHLVIKGIDPTYNVWYHHGEVCYQGDEVENELEDAFMFEATNFYKSTFMG 90
M HCD QI+YEHLVIKG+DPTYN WYHHGEVC +GDE+ENE++D+FM EATNFY+ST+MG
Sbjct: 1 MAHCDFQIIYEHLVIKGMDPTYNFWYHHGEVC-EGDEMENEVDDSFMCEATNFYESTYMG 60
Query: 91 YEDNI-DPLISTNQKNFSQNVQEANTPLYERCTKYTKMSAVVVLYKLKTFNGWSDTSFTS 150
ED I D S + FSQ V+EANTPLY CTKYTKMSAVV LYKLKTFNGWSDTSFTS
Sbjct: 61 KEDIIHDNSTSRKENKFSQKVEEANTPLYGGCTKYTKMSAVVALYKLKTFNGWSDTSFTS 120
Query: 151 LLELLHDMLPTDNVIPRSIYEVRKLFKTFDLGYQKIHACVKDCCLFRNENEKLENCPHCA 210
LL LLHDMLP DNVI RSIYEVRKLFK FDLGYQKIHACVKDCCLFRNENEKLE+CPHCA
Sbjct: 121 LLGLLHDMLPMDNVISRSIYEVRKLFKEFDLGYQKIHACVKDCCLFRNENEKLESCPHCA 180
BLAST of Lcy04g001400 vs. NCBI nr
Match:
TYK24342.1 (uncharacterized protein E5676_scaffold205G001200 [Cucumis melo var. makuwa])
HSP 1 Score: 305.8 bits (782), Expect = 2.8e-79
Identity = 145/181 (80.11%), Postives = 158/181 (87.29%), Query Frame = 0
Query: 31 MRHCDLQIVYEHLVIKGIDPTYNVWYHHGEVCYQGDEVENELEDAFMFEATNFYKSTFMG 90
M HCD QI+YEHLVIKG+DPTYN WYHHGEVC +GDE+ENE++D+FM EATNFY+ST+MG
Sbjct: 1 MAHCDFQIIYEHLVIKGMDPTYNFWYHHGEVC-EGDEMENEVDDSFMCEATNFYESTYMG 60
Query: 91 YEDNI-DPLISTNQKNFSQNVQEANTPLYERCTKYTKMSAVVVLYKLKTFNGWSDTSFTS 150
ED I D S + FSQ V+EANTPLY CTKYTKMSAVV LYKLKTFNGWSDTSFTS
Sbjct: 61 KEDIIHDNSTSRKENKFSQKVEEANTPLYGGCTKYTKMSAVVALYKLKTFNGWSDTSFTS 120
Query: 151 LLELLHDMLPTDNVIPRSIYEVRKLFKTFDLGYQKIHACVKDCCLFRNENEKLENCPHCA 210
LL LLHDMLP DNVI RSIYEVRKLFK FDLGYQKIHACVKDCCLFRNENEKLE+CPHCA
Sbjct: 121 LLGLLHDMLPMDNVISRSIYEVRKLFKEFDLGYQKIHACVKDCCLFRNENEKLESCPHCA 180
BLAST of Lcy04g001400 vs. NCBI nr
Match:
XP_028058301.1 (uncharacterized protein LOC114262143 [Camellia sinensis])
HSP 1 Score: 226.9 bits (577), Expect = 1.7e-55
Identity = 106/211 (50.24%), Postives = 143/211 (67.77%), Query Frame = 0
Query: 1 MEGAWNFLQDVKKRKPDTKKILCPCKECRNMRHCDLQIVYEHLVIKGIDPTYNVWYHHGE 60
M+ AWNF+ K+ +KI+CPCK+CRN+ H +++VYEHLVIKG+D TY W+HHGE
Sbjct: 1 MKAAWNFVDMAKRNAGYPEKIICPCKDCRNLSHHCIEVVYEHLVIKGMDETYTNWFHHGE 60
Query: 61 VCYQGDEVENELEDAFMFEATNFYKSTFM---GYEDNIDPLISTNQKNFSQNVQEANTPL 120
+ D+ + E M + N +K+ YE ++D + ++F + +++A TPL
Sbjct: 61 QPHVSDKPDME-----MLGSYNLFKAACARDDNYEKSVD---ESGDEDFFKLLEDAETPL 120
Query: 121 YERCTKYTKMSAVVVLYKLKTFNGWSDTSFTSLLELLHDMLPTDNVIPRSIYEVRKLFKT 180
Y C KYTK+SA+V LYKLK N WSD SF LLE+LHDMLP NVI +S+Y V+K K
Sbjct: 121 YLGCEKYTKLSAIVALYKLKAVNEWSDNSFNKLLEILHDMLPMGNVILKSVYSVKKFVKA 180
Query: 181 FDLGYQKIHACVKDCCLFRNENEKLENCPHC 209
FDLGY+KIHACV DCCLFR EN ++E+CP C
Sbjct: 181 FDLGYEKIHACVNDCCLFRKENAEMESCPKC 203
BLAST of Lcy04g001400 vs. NCBI nr
Match:
XP_028095771.1 (uncharacterized protein LOC114295665 [Camellia sinensis])
HSP 1 Score: 224.9 bits (572), Expect = 6.3e-55
Identity = 106/211 (50.24%), Postives = 142/211 (67.30%), Query Frame = 0
Query: 1 MEGAWNFLQDVKKRKPDTKKILCPCKECRNMRHCDLQIVYEHLVIKGIDPTYNVWYHHGE 60
M+ AWNF+ K+ +KI+CPCK+CRN+ H +++VYEHLVIKG+D TY W+HHGE
Sbjct: 1 MKAAWNFVDMAKRNAGYPEKIICPCKDCRNLSHHCIEVVYEHLVIKGMDETYTNWFHHGE 60
Query: 61 VCYQGDEVENELEDAFMFEATNFYKSTFM---GYEDNIDPLISTNQKNFSQNVQEANTPL 120
D+ + E M + N +K+ YE ++D + ++F + +++A TPL
Sbjct: 61 QPNVSDKPDME-----MLGSYNLFKAACARDDNYEKSVD---ESGDEDFFKLLEDAETPL 120
Query: 121 YERCTKYTKMSAVVVLYKLKTFNGWSDTSFTSLLELLHDMLPTDNVIPRSIYEVRKLFKT 180
Y C KYTK+SA+V LYKLK N WSD SF LLE+LHDMLP NVI +S+Y V+K K
Sbjct: 121 YLGCEKYTKLSAIVALYKLKAVNEWSDNSFNKLLEMLHDMLPMGNVILKSVYSVKKFVKA 180
Query: 181 FDLGYQKIHACVKDCCLFRNENEKLENCPHC 209
FDLGY+KIHACV DCCLFR EN ++E+CP C
Sbjct: 181 FDLGYKKIHACVNDCCLFRKENAEMESCPKC 203
BLAST of Lcy04g001400 vs. NCBI nr
Match:
TYK07512.1 (uncharacterized protein E5676_scaffold1702G00300 [Cucumis melo var. makuwa] >TYK21220.1 uncharacterized protein E5676_scaffold359G00290 [Cucumis melo var. makuwa])
HSP 1 Score: 222.6 bits (566), Expect = 3.1e-54
Identity = 108/141 (76.60%), Postives = 119/141 (84.40%), Query Frame = 0
Query: 31 MRHCDLQIVYEHLVIKGIDPTYNVWYHHGEVCYQGDEVENELEDAFMFEATNFYKSTFMG 90
M HCD QI+YEHLVIKG+DPTYN WYHHGEVC +GDE+ENE++D+FM EATNFY+ST+MG
Sbjct: 1 MAHCDFQIIYEHLVIKGMDPTYNFWYHHGEVC-EGDEMENEVDDSFMCEATNFYESTYMG 60
Query: 91 YEDNI-DPLISTNQKNFSQNVQEANTPLYERCTKYTKMSAVVVLYKLKTFNGWSDTSFTS 150
ED I D S + FSQ V+EANTPLY CTKYTKMSAVV LYKLKTFNGWSDTSFTS
Sbjct: 61 KEDIIHDNSTSRKENKFSQKVEEANTPLYGGCTKYTKMSAVVALYKLKTFNGWSDTSFTS 120
Query: 151 LLELLHDMLPTDNVIPRSIYE 171
LL LLHDMLP DNVI RSIYE
Sbjct: 121 LLGLLHDMLPMDNVISRSIYE 140
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DLF1 | 1.4e-79 | 80.11 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3C984 | 1.4e-79 | 80.11 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S8ADG1 | 1.1e-57 | 50.96 | Transpos_assoc domain-containing protein OS=Citrus limon OX=2708 PE=4 SV=1 | [more] |
A0A803PSE2 | 1.8e-55 | 48.33 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A5D3DCM2 | 1.5e-54 | 76.60 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
TYK08453.1 | 2.8e-79 | 80.11 | uncharacterized protein E5676_scaffold654G00690 [Cucumis melo var. makuwa] | [more] |
TYK24342.1 | 2.8e-79 | 80.11 | uncharacterized protein E5676_scaffold205G001200 [Cucumis melo var. makuwa] | [more] |
XP_028058301.1 | 1.7e-55 | 50.24 | uncharacterized protein LOC114262143 [Camellia sinensis] | [more] |
XP_028095771.1 | 6.3e-55 | 50.24 | uncharacterized protein LOC114295665 [Camellia sinensis] | [more] |
TYK07512.1 | 3.1e-54 | 76.60 | uncharacterized protein E5676_scaffold1702G00300 [Cucumis melo var. makuwa] >TYK... | [more] |
Match Name | E-value | Identity | Description | |