Lcy03g019200 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g019200
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionF-box protein
LocationChr03: 52753440 .. 52754621 (+)
RNA-Seq ExpressionLcy03g019200
SyntenyLcy03g019200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGCGGTGATATCCCCTTTGACGTTTTATCTCGATTGCCAATTGAGACTCTTCTTGAAATGAGATGCGTTTCTAAAGGGTGGAATCAACTTATTTTAGACCGCTCATTTGTACAGGCTCAGTTCAGAAAGACCGGATTGACATTATCAGGTTTCATCTTTCAGGAAAAGTACCAAAAGTGCATTGACGATATAAAAACATTTAGCTATATGCCAGTAAAGGCAGATTATAAGGTGAAGAAAATGGTCTTCAGTTTCCTGCCCGAGGATGTTGTTATTTTGGCATCCTGTAATGGTCTGGTTTGTTGTAGAAACTGCTTCCCTACACAACACCCCACAATTTACATCTGCAATCCCTTGTTCAAGAAATGGGTGAGTTTTGAGGTGGCTCAGCTGGACAGACACAGCAACATTGCTCTGGCATTTGATCCCATCCAGGACCTTGTAAACTTGTCGACAAATTTCAAAATAGTAAGAGTTGAGCAGTTGGAGAATGAGCAAGAGGCAAGGTACTACACATTTAAAATATTCTATTCAGAAACAGGATCTTGGAAGGAATCAAATGAAGTTTGTTACTCAAATGGCAGTTTGTGCAAGAGCAAAGGCATTTATGTTAAAGGGGTCCTACATTGGCTTACTGATACAGATCAAATCCTTGCATTTGATACAGAGAAAGAACTGTCTCTGTTGATTTCATCTCCAATTCCTTCCTTGGAATTTTTCATCAATGTCCCTGGAACATGCATAGGAGAATCCAAGGGCTTACTGCATTTCATCATGATCTGTGAAGATGGAATTATTGTATGGTGTCTAGAAGACTATTTTGAGACAAAATGGATGCTCAAACATTCAAAACCGCTCCAAGTAATTGAGGAAGAGAACCCAAAGATGTTTTTCAATTTATACAAGAGCATGCAACAGAAACTTGTTGCACATATGGATCCATGGATGGATCCCTTGGGATTTAAAGATGAGGTTTTATTGATGAGGGTTTCTTCAACTATCTATTTCTACCACACTGAAACAGGCAAGGTGGTGGAAGTTTGTAGCGTTACCAGTTTGGGTCCAAACCCCTATGTTGATCCTTCAGTGCTTCCTTATTCGCTGAGTTTGGTTCCCTTGAACGTTTCTCTCACAGAATCTGACTCAAACAGCAACACAAACCCCAACGAGAACTAG

mRNA sequence

ATGAATAGCGGTGATATCCCCTTTGACGTTTTATCTCGATTGCCAATTGAGACTCTTCTTGAAATGAGATGCGTTTCTAAAGGGTGGAATCAACTTATTTTAGACCGCTCATTTGTACAGGCTCAGTTCAGAAAGACCGGATTGACATTATCAGGTTTCATCTTTCAGGAAAAGTACCAAAAGTGCATTGACGATATAAAAACATTTAGCTATATGCCAGTAAAGGCAGATTATAAGGTGAAGAAAATGGTCTTCAGTTTCCTGCCCGAGGATGTTGTTATTTTGGCATCCTGTAATGGTCTGGTTTGTTGTAGAAACTGCTTCCCTACACAACACCCCACAATTTACATCTGCAATCCCTTGTTCAAGAAATGGGTGAGTTTTGAGGTGGCTCAGCTGGACAGACACAGCAACATTGCTCTGGCATTTGATCCCATCCAGGACCTTGTAAACTTGTCGACAAATTTCAAAATAGTAAGAGTTGAGCAGTTGGAGAATGAGCAAGAGGCAAGGTACTACACATTTAAAATATTCTATTCAGAAACAGGATCTTGGAAGGAATCAAATGAAGTTTGTTACTCAAATGGCAGTTTGTGCAAGAGCAAAGGCATTTATGTTAAAGGGGTCCTACATTGGCTTACTGATACAGATCAAATCCTTGCATTTGATACAGAGAAAGAACTGTCTCTGTTGATTTCATCTCCAATTCCTTCCTTGGAATTTTTCATCAATGTCCCTGGAACATGCATAGGAGAATCCAAGGGCTTACTGCATTTCATCATGATCTGTGAAGATGGAATTATTGTATGGTGTCTAGAAGACTATTTTGAGACAAAATGGATGCTCAAACATTCAAAACCGCTCCAAGTAATTGAGGAAGAGAACCCAAAGATGTTTTTCAATTTATACAAGAGCATGCAACAGAAACTTGTTGCACATATGGATCCATGGATGGATCCCTTGGGATTTAAAGATGAGGTTTTATTGATGAGGGTTTCTTCAACTATCTATTTCTACCACACTGAAACAGGCAAGGTGGTGGAAGTTTGTAGCGTTACCAGTTTGGGTCCAAACCCCTATGTTGATCCTTCAGTGCTTCCTTATTCGCTGAGTTTGGTTCCCTTGAACGTTTCTCTCACAGAATCTGACTCAAACAGCAACACAAACCCCAACGAGAACTAG

Coding sequence (CDS)

ATGAATAGCGGTGATATCCCCTTTGACGTTTTATCTCGATTGCCAATTGAGACTCTTCTTGAAATGAGATGCGTTTCTAAAGGGTGGAATCAACTTATTTTAGACCGCTCATTTGTACAGGCTCAGTTCAGAAAGACCGGATTGACATTATCAGGTTTCATCTTTCAGGAAAAGTACCAAAAGTGCATTGACGATATAAAAACATTTAGCTATATGCCAGTAAAGGCAGATTATAAGGTGAAGAAAATGGTCTTCAGTTTCCTGCCCGAGGATGTTGTTATTTTGGCATCCTGTAATGGTCTGGTTTGTTGTAGAAACTGCTTCCCTACACAACACCCCACAATTTACATCTGCAATCCCTTGTTCAAGAAATGGGTGAGTTTTGAGGTGGCTCAGCTGGACAGACACAGCAACATTGCTCTGGCATTTGATCCCATCCAGGACCTTGTAAACTTGTCGACAAATTTCAAAATAGTAAGAGTTGAGCAGTTGGAGAATGAGCAAGAGGCAAGGTACTACACATTTAAAATATTCTATTCAGAAACAGGATCTTGGAAGGAATCAAATGAAGTTTGTTACTCAAATGGCAGTTTGTGCAAGAGCAAAGGCATTTATGTTAAAGGGGTCCTACATTGGCTTACTGATACAGATCAAATCCTTGCATTTGATACAGAGAAAGAACTGTCTCTGTTGATTTCATCTCCAATTCCTTCCTTGGAATTTTTCATCAATGTCCCTGGAACATGCATAGGAGAATCCAAGGGCTTACTGCATTTCATCATGATCTGTGAAGATGGAATTATTGTATGGTGTCTAGAAGACTATTTTGAGACAAAATGGATGCTCAAACATTCAAAACCGCTCCAAGTAATTGAGGAAGAGAACCCAAAGATGTTTTTCAATTTATACAAGAGCATGCAACAGAAACTTGTTGCACATATGGATCCATGGATGGATCCCTTGGGATTTAAAGATGAGGTTTTATTGATGAGGGTTTCTTCAACTATCTATTTCTACCACACTGAAACAGGCAAGGTGGTGGAAGTTTGTAGCGTTACCAGTTTGGGTCCAAACCCCTATGTTGATCCTTCAGTGCTTCCTTATTCGCTGAGTTTGGTTCCCTTGAACGTTTCTCTCACAGAATCTGACTCAAACAGCAACACAAACCCCAACGAGAACTAG

Protein sequence

MNSGDIPFDVLSRLPIETLLEMRCVSKGWNQLILDRSFVQAQFRKTGLTLSGFIFQEKYQKCIDDIKTFSYMPVKADYKVKKMVFSFLPEDVVILASCNGLVCCRNCFPTQHPTIYICNPLFKKWVSFEVAQLDRHSNIALAFDPIQDLVNLSTNFKIVRVEQLENEQEARYYTFKIFYSETGSWKESNEVCYSNGSLCKSKGIYVKGVLHWLTDTDQILAFDTEKELSLLISSPIPSLEFFINVPGTCIGESKGLLHFIMICEDGIIVWCLEDYFETKWMLKHSKPLQVIEEENPKMFFNLYKSMQQKLVAHMDPWMDPLGFKDEVLLMRVSSTIYFYHTETGKVVEVCSVTSLGPNPYVDPSVLPYSLSLVPLNVSLTESDSNSNTNPNEN
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FLS02.2e-1124.09F-box protein At5g07610 OS=Arabidopsis thaliana OX=3702 GN=At5g07610 PE=2 SV=1[more]
Q9LM754.1e-1027.78Putative F-box/kelch-repeat protein At1g20790 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9LIR32.7e-0926.58Putative F-box protein At3g23950 OS=Arabidopsis thaliana OX=3702 GN=At3g23950 PE... [more]
O826222.3e-0822.13Putative F-box protein At4g10190 OS=Arabidopsis thaliana OX=3702 GN=At4g10190 PE... [more]
Q9FIH17.3e-0724.60F-box protein At5g42460 OS=Arabidopsis thaliana OX=3702 GN=At5g42460 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A6J1JLZ61.7e-19284.01putative F-box protein At3g23950 OS=Cucurbita maxima OX=3661 GN=LOC111485783 PE=... [more]
A0A6J1E4Z35.0e-19284.26putative F-box protein At3g23950 OS=Cucurbita moschata OX=3662 GN=LOC111429994 P... [more]
A0A6J1BYT61.7e-18479.80F-box protein At5g07610-like OS=Momordica charantia OX=3673 GN=LOC111006988 PE=4... [more]
A0A5D3BX111.8e-18179.19F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00400... [more]
A0A1S3B9021.8e-18179.19F-box protein At5g07610-like OS=Cucumis melo OX=3656 GN=LOC103487488 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG7023450.12.7e-19284.26F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022988584.13.5e-19284.01putative F-box protein At3g23950 [Cucurbita maxima][more]
XP_023516739.11.0e-19184.01putative F-box protein At3g23950 [Cucurbita pepo subsp. pepo][more]
XP_022921853.11.0e-19184.26putative F-box protein At3g23950 [Cucurbita moschata] >KAG6589778.1 F-box protei... [more]
XP_038880354.12.0e-18781.22F-box protein At5g49610-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT5G07610.11.6e-1224.09F-box family protein [more]
AT1G20790.12.9e-1127.78F-box family protein [more]
AT3G23950.11.9e-1026.58F-box family protein [more]
AT4G10190.11.6e-0922.13F-box and associated interaction domains-containing protein [more]
AT5G42460.15.2e-0824.60F-box and associated interaction domains-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 9..38
e-value: 2.4E-5
score: 24.1
IPR017451F-box associated interaction domainTIGRFAMTIGR01640TIGR01640coord: 96..284
e-value: 9.7E-17
score: 59.0
NoneNo IPR availablePANTHERPTHR35546F-BOX PROTEIN INTERACTION DOMAIN PROTEIN-RELATEDcoord: 2..375
NoneNo IPR availablePANTHERPTHR35546:SF21F-BOX PROTEIN INTERACTION DOMAIN PROTEINcoord: 2..375
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 6..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g019200.1Lcy03g019200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding