Lcy03g018720 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g018720
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptiontetraspanin-15-like
LocationChr03: 52429791 .. 52430976 (+)
RNA-Seq ExpressionLcy03g018720
SyntenyLcy03g018720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGAACAACAACAACAATGCAAACGTTGCGGATGAAGCCGGCGCAATAGTGCCGGTAGAAGAGAAGCCCTGCAAAGACAAGGAAGCCGGAGCCCCCGCCCCAGCCCCCGCCGCCGCCCCCCCCAGCGAGTCTCCGGCGACGGGGAAAAACCCATTTCTTCAAATTAACAATGTGGACAAGATATTGGCGACAGTGACGCTGATACTGTCGATCCCGGTTCTGGGGTTTATTGTTTGGATATTTTACGTGAGGGACTCGGAATGCGAGAGCATTCTGAAGCTGCCGACTTTCCAGCTGGGGATCGGCGTTGGGCTGATATTTCTGTTTCTGATAAGCAACGGCGTCGTTTTTTTGAGGTCTCGGTTCCCTGTTTTGGGGCTTTTAATTGTGATGGTGCCGTTGCTGCTGATATTCATAATTGGGCTCGCACTTGTGGGTGCCTATAAGATGGAGAGCCGCTCCGTGGCCGCGTCGCCTAAGTGGCTGAGATTGAAGGTCTTTGACAATGCTCATTGGCAGGATATCAAAACTTGTATTTACGATACAGGGGCCTGCGATGATTTGGTCTCCAGAACTTTGATGCTTAAGTCTTATGATTTTAGTCTCAAGAAGTTGTCTTCCATTGAGGTAATAATCTCGCTCGTTTGAATAGTTTATAGACACCCTCATGCATCGTTTCTAATGATCGTGTGCGTGTGTGTGTGTTTGTGTGTTAGTCTGGGTGCTGCACACCAGCGACGATCTGTGCAATGGAGTATGTAAACGCGACGTTTTGGATGAGAAGGGACGGACCGACAATCCCATCAAACCCATACGACAGCGACTGCGATTTATGGGACAATGACAGAGGAAACTTGTGCTACAATTGTCTGTCGTGCAAAAGAGGCTTTCTGAAAACTCTGCAGGCGAAATGGTGGAAGCTCGGCGTTTTTCTCATCATCTCCTCTCTCTTGCTCTTCATCTCTCATCTCGTCTTGTTCCTCTCCTCTGTCCTCCAACAGTTTCGGACTTAGCCTCACAACAACAACCACCACCACGACAATAACGAGGATTTCCCAGTTTTGCAGCTCTTTCATTTAATGTTTTCCTCTTTCTTTCTTCGTCTTTGCATGATTTTGCATATACCTTCTTTTTTGTTCCTTCAGTCAGTCCCTCTCTTGTACATATACATTCACCTTTT

mRNA sequence

ATGGCAGAGAACAACAACAACAATGCAAACGTTGCGGATGAAGCCGGCGCAATAGTGCCGGTAGAAGAGAAGCCCTGCAAAGACAAGGAAGCCGGAGCCCCCGCCCCAGCCCCCGCCGCCGCCCCCCCCAGCGAGTCTCCGGCGACGGGGAAAAACCCATTTCTTCAAATTAACAATGTGGACAAGATATTGGCGACAGTGACGCTGATACTGTCGATCCCGGTTCTGGGGTTTATTGTTTGGATATTTTACGTGAGGGACTCGGAATGCGAGAGCATTCTGAAGCTGCCGACTTTCCAGCTGGGGATCGGCGTTGGGCTGATATTTCTGTTTCTGATAAGCAACGGCGTCGTTTTTTTGAGGTCTCGGTTCCCTGTTTTGGGGCTTTTAATTGTGATGGTGCCGTTGCTGCTGATATTCATAATTGGGCTCGCACTTGTGGGTGCCTATAAGATGGAGAGCCGCTCCGTGGCCGCGTCGCCTAAGTGGCTGAGATTGAAGGTCTTTGACAATGCTCATTGGCAGGATATCAAAACTTGTATTTACGATACAGGGGCCTGCGATGATTTGGTCTCCAGAACTTTGATGCTTAAGTCTTATGATTTTAGTCTCAAGAAGTTGTCTTCCATTGAGTCTGGGTGCTGCACACCAGCGACGATCTGTGCAATGGAGTATGTAAACGCGACGTTTTGGATGAGAAGGGACGGACCGACAATCCCATCAAACCCATACGACAGCGACTGCGATTTATGGGACAATGACAGAGGAAACTTGTGCTACAATTGTCTGTCGTGCAAAAGAGGCTTTCTGAAAACTCTGCAGGCGAAATGGTGGAAGCTCGGCGTTTTTCTCATCATCTCCTCTCTCTTGCTCTTCATCTCTCATCTCGTCTTGTTCCTCTCCTCTGTCCTCCAACAGTTTCGGACTTAGCCTCACAACAACAACCACCACCACGACAATAACGAGGATTTCCCAGTTTTGCAGCTCTTTCATTTAATGTTTTCCTCTTTCTTTCTTCGTCTTTGCATGATTTTGCATATACCTTCTTTTTTGTTCCTTCAGTCAGTCCCTCTCTTGTACATATACATTCACCTTTT

Coding sequence (CDS)

ATGGCAGAGAACAACAACAACAATGCAAACGTTGCGGATGAAGCCGGCGCAATAGTGCCGGTAGAAGAGAAGCCCTGCAAAGACAAGGAAGCCGGAGCCCCCGCCCCAGCCCCCGCCGCCGCCCCCCCCAGCGAGTCTCCGGCGACGGGGAAAAACCCATTTCTTCAAATTAACAATGTGGACAAGATATTGGCGACAGTGACGCTGATACTGTCGATCCCGGTTCTGGGGTTTATTGTTTGGATATTTTACGTGAGGGACTCGGAATGCGAGAGCATTCTGAAGCTGCCGACTTTCCAGCTGGGGATCGGCGTTGGGCTGATATTTCTGTTTCTGATAAGCAACGGCGTCGTTTTTTTGAGGTCTCGGTTCCCTGTTTTGGGGCTTTTAATTGTGATGGTGCCGTTGCTGCTGATATTCATAATTGGGCTCGCACTTGTGGGTGCCTATAAGATGGAGAGCCGCTCCGTGGCCGCGTCGCCTAAGTGGCTGAGATTGAAGGTCTTTGACAATGCTCATTGGCAGGATATCAAAACTTGTATTTACGATACAGGGGCCTGCGATGATTTGGTCTCCAGAACTTTGATGCTTAAGTCTTATGATTTTAGTCTCAAGAAGTTGTCTTCCATTGAGTCTGGGTGCTGCACACCAGCGACGATCTGTGCAATGGAGTATGTAAACGCGACGTTTTGGATGAGAAGGGACGGACCGACAATCCCATCAAACCCATACGACAGCGACTGCGATTTATGGGACAATGACAGAGGAAACTTGTGCTACAATTGTCTGTCGTGCAAAAGAGGCTTTCTGAAAACTCTGCAGGCGAAATGGTGGAAGCTCGGCGTTTTTCTCATCATCTCCTCTCTCTTGCTCTTCATCTCTCATCTCGTCTTGTTCCTCTCCTCTGTCCTCCAACAGTTTCGGACTTAG

Protein sequence

MAENNNNNANVADEAGAIVPVEEKPCKDKEAGAPAPAPAAAPPSESPATGKNPFLQINNVDKILATVTLILSIPVLGFIVWIFYVRDSECESILKLPTFQLGIGVGLIFLFLISNGVVFLRSRFPVLGLLIVMVPLLLIFIIGLALVGAYKMESRSVAASPKWLRLKVFDNAHWQDIKTCIYDTGACDDLVSRTLMLKSYDFSLKKLSSIESGCCTPATICAMEYVNATFWMRRDGPTIPSNPYDSDCDLWDNDRGNLCYNCLSCKRGFLKTLQAKWWKLGVFLIISSLLLFISHLVLFLSSVLQQFRT
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q1PDI11.3e-5440.31Tetraspanin-15 OS=Arabidopsis thaliana OX=3702 GN=TET15 PE=2 SV=1[more]
Q9ZUN52.2e-2730.28Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1[more]
Q9M0B72.1e-2532.94Tetraspanin-9 OS=Arabidopsis thaliana OX=3702 GN=TET9 PE=2 SV=1[more]
Q9FIQ51.0e-2431.64Protein TORNADO 2 OS=Arabidopsis thaliana OX=3702 GN=TRN2 PE=1 SV=1[more]
Q9M1E73.0e-2429.66Tetraspanin-3 OS=Arabidopsis thaliana OX=3702 GN=TET3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1ETL54.4e-13581.67tetraspanin-15-like OS=Cucurbita moschata OX=3662 GN=LOC111437440 PE=4 SV=1[more]
A0A6J1KPV11.3e-13481.03tetraspanin-15 OS=Cucurbita maxima OX=3661 GN=LOC111495409 PE=4 SV=1[more]
A0A6J1E1M81.7e-13179.68tetraspanin-15-like OS=Cucurbita moschata OX=3662 GN=LOC111430019 PE=4 SV=1[more]
A0A5A7SX484.2e-13079.68Tetraspanin-15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00220... [more]
A0A1S3BA914.2e-13079.68tetraspanin-15 OS=Cucumis melo OX=3656 GN=LOC103487487 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_038878554.11.4e-13582.22tetraspanin-15 [Benincasa hispida][more]
XP_022931184.19.1e-13581.67tetraspanin-15-like [Cucurbita moschata] >KAG6587790.1 Tetraspanin-15, partial [... [more]
KAG7035707.11.2e-13481.67Tetraspanin-15 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023001208.12.6e-13481.03tetraspanin-15 [Cucurbita maxima][more]
XP_023515815.12.1e-13179.68tetraspanin-15-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT5G57810.18.9e-5640.31tetraspanin15 [more]
AT2G19580.11.6e-2830.28tetraspanin2 [more]
AT4G30430.11.5e-2632.94tetraspanin9 [more]
AT5G46700.17.4e-2631.64Tetraspanin family protein [more]
AT3G45600.12.1e-2529.66tetraspanin3 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..47
NoneNo IPR availablePANTHERPTHR32191:SF47TETRASPANIN-14-RELATEDcoord: 44..308
IPR044991Tetraspani, plantPANTHERPTHR32191TETRASPANIN-8-RELATEDcoord: 44..308

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g018720.1Lcy03g018720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009734 auxin-activated signaling pathway
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009506 plasmodesma