Lcy03g018260 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g018260
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description4-coumarate--CoA ligase
LocationChr03: 52000091 .. 52004929 (+)
RNA-Seq ExpressionLcy03g018260
SyntenyLcy03g018260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAATCAAAATATATTACTAATTTGTTTATTTCCAAATAAATATGCATAGTAGTTATTTATATAACAACTCACTTCACCAACTCCACAACTAGTTGCTATCTGCTTCTGCTCTCATCTCAAACCTCACTTCAACCAGTACACCAAAATTAAATCGACCTTTCACCTTCTTCATTCATTCCTCTACTTCCTTGCATTTCAACTCTGCAACAACCAACAACCACCCATGGCGGCCGCCGATCCCTCACCGGAATTCATATTCCGGTCAAAGCTCCCGGACATCACCATCCCCAACCACCTCCCCTTGCACACATATTGCTTCGAAAAGATCTCCCAATTCAAACACCGTCCATGTCTAATCAACGGCGCCACCGGCGACACCTACACCTACGGCGAAGTCCACGCAACAGCCCGCCGAGTCGCCGCCGGCCTCCACAAGCTCGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACAGCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTATATCGGCGCCACCGCCACCATGGCTAACCCGTTCTTCACTCCGCCAGAGATCGCGAAACACGCCGCGTCCTCCGGCGCCAAGCTGATCATAACCCAAGCCGCCTTCGCCGAGAAAGTGAAGAACCTCTCCGACGAAAACGACGCGATCGTCGAAGTCATATACATCGACCCTCCGCCGGACGGAGGATCTCATTTTTCGTCGTTGACCGATCACGCAAAAGAGGAGGAAATGCCGGATGTGAAGATCAGTCCCAACGACGTCGTCGCGTTGCCTTACTCGTCTGGCACTACGGGTCTCCCGAAAGGAGTGATGCTGACTCACAAGGGATTGGTGACCAGCGTGGCGCAACAAGTGGACGGTGAAAATCCGCACCTCTATATTCGAAGCGACGACGTCGTTTTGTGCGTGCTTCCTCTGTTTCACATCTATTCGCTGAACTCGATCATGATGTGCTCGTTGCGAGTCGGAGCCGCGATTTTGATCATACAGAAATTCGAAGTTAATTCGCTTGTGGAGTTGGTGCCGAAATATAAGGTGACGGTTGCGCCGTTTGTGCCGCCTATTGTATTGGCGATTGCGAAGAGCCCGGCTGTGGACCGTGCCGACATGTCGTCCATACGGATGGTGTTGTCGGGAGCGGCACCGCTCGGGAAGGAGCTTGAAGATGCGTTTAGAGCCAAGCTTCCGCATGCGATTCTCGGGCAGGTAGTTTAAAACCATGTTTTAATTTCGTTCATGTAAATGAGAATAGTGGATGTATTATGGATTTTATGTTAAAATTAAAATAAGAGTGGATTTTTTTTTTAAAATGTCGACGTCCATGAAAAATGTAGAGGTCATGGAAATATCAATAAAATATTGTTTTGTCGATATGTATTTTGAAAAAAAAAAAAAATTAAAACAACCATTTTTTTTTCATTTTTGTTAAACGTTATAGATAAACATTTTAAACAACATGTTATATTTGCCTTATATTTGCTTTAGTTACATTTTGTTGCTATTTTTTTTAAATATATATTTCATTGATTTTCTTTTTAATGATAAAATGGAATGTTTGAATCCATTATGATGTGTGAAAATGTTGATACACATCAATGAAAGTTTAATATATCCTAGTTTTATAGGGATATGGAATGACAGAGTCGGGGTCGGTGCTGACGATGTCCCTGGCGTTTGCAAAGGAGAGGTTCGAGATAAAATCAGGAGCTTGTGGGACAGTGATGAGAAATTCAAAGATGAAGATCATAAACCCTCAAACGGGAGTTTCTCTTCCAAGGAATCAACCTGGGGAGATTTGTATTAGAAGCCCTCAGATGATGAAAGGTATGCAATTATTTACCATCTTATTTGTTTGCATCAAACGGGAATTTCTCTTTTTTAATTGTCAATATTTTAATAGGATAAGTAAAAAAATCCATACATACAACCAAGTATTGTTCAATTTCTAATAGGTTTAGCAAAAAATAATAATAATAATAAATCTAGGGAAATAAAAAGCTGGTTGCAAGTCAACTTTCATTCAGGTAATAAACTAGTTAAAAACTTTAGTATATACAATTTTTTTTATAATGATTTAATCTATATGCTTTAGTATGTAATAGTTATGGACTGTGGAAATTTTCTTTAACTTGCAATGAAGGTTATTTATTTATCTATTTATTTGTATGTATATAGATAGATATATATATCTAGTAATAAATTATATCACACATTTTCTTTTTATAAACATAGAAATGAAACCTTGAAAAGAACTATAAAACGGAACCCTGCAAATTGAAAAAAGAAAAAATTAGAAATGAAGTTTTAGTGTGTTAGACCTATTATGGAGTTTAATGAAAAGTAAATGACTATGATAGAAAATAAATATCAAAACCACATAAATTAAATTAAAAAATCGGTAAACCTTAACTTTATAGTAATTAAAACTAGTATCTGGGTTTAAAAATAGAGTAAGATTTTAGTGAAAAAATAGTTTTCTATAATAAAATAAAAAAATTAGTTGAGAATATAAAAGAAAAATAATATATGGGCGAAAGAAATTGAGATTGATCGGTATTATAATTCTCTATTGCTAATCTAGTATGTGTAAATCAATGTTAAATTCAAATAAACTATATATTTAACCTCAAATACTAAATTTCATGAATTACTAATCAATTCTTCGAAATTGTTACCATATTAAAATTTATATTTCACGATGAATTCAAACACGAAATAATAATTAAAGGATAAAAAAAACCTCAAAATCATTAACATTTTAATGTTGATGTGTAAGAAAGTACCTATCCACCTATATGCAACTAAGTGTTGTCTCAAGTAAAATAAATAATATTTGGCTGCATACCATTGTGTATATATTTTTCTACACACCATCATCAAAACGTTGACTACTAAAAGAGAGAATGGTAGAAATTGAGAAATTTTTTTATCTCCTAATTGTGAACATTTTTCATAGTAGTGTGTAAGAAGATATTTACATGTCGGAATACAACAAAATATTATCCAAATAAAATATAATGTATTTTTATGATAGTGTGAGAAGATACTTACACATCGATATACAATAAAAATATTATCCAAATAAAATATCTATTATGTTATTCAAGGTGAGAGGTTAAATCTCTCACCCTCACCATTATTGATGTGTTAAAAGAAAAACAATATATCTTACATCAACCATTAATTAATGAATTACATTTTAACGGTGGAGTTGGCAGCTGATGTCACTAATTAATACCGCCTAGTTACTCCAAATTAAGCAACTGACTAGAAGAAAAAATGAAATATGTTACTAATTAATGCCGCCTAGCCATCCCAAATTACACCAATGCAGAGACGTCATTTTATTTGCTTGGATCTGGAAGCATCAATTTGGGCCAAGACCACATTTATTGGGCCTCATGGGCTCATTGCCCAAGACCAATCAAGTCCGATAAAATCGAGAGAGTCCATTAGATTAGTTTGTTTATGCGTCAAGTTTTGGTTGGTTGAACTGAACAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATCGACGAAGACGGATGGCTTCACACCGGCGACATAGGTTTCGTCGACGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTGATTTCACACAGCCAGATCGCCGACGCTGCAGTTATCCCGTACGTGAGCCTTCTCGATTCGATTCCTTTACCCGCCCTCTTTACGATTTATGTGCTGCATTTTTTACTTATTTAGCAACATTGCAGTTTGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGGTTCAACATCACCGAGGATGAAATTAAGCAATACATCTCCAAACAGGTAAAACCTCCAATTTTGGCATTAATTTAAAGTTTTCAAGTTTAATATCTTATTAGGCTTACCGATTGATGGAAAATTTAGCATCGATTTCACCGAAAAATTAGGTGACCTTCCTGTTATGATATAACACGTCGTAGGCCCCTGCTCTTTCGGTTACATTCCTATTGACTATAATTCTGAACCTTTAACTATGTCTCTGCCTAACTTAAAAAGTTGTCTATGTGAGCAATTTACTCCACAAAATTCCAATAAGTGTGTTGAACTTTTAATTTTGTGATTGATTCTACTTGTCTGAAATTGGCTCATTTAAGTGATAAATTAGAGTTTGTAGAGGCTTTTTAGGAACAAAATTGAAGGTTTAGGAATCTCTAAAAAAAAAATTCCAAAGTGTAATGATCAAATATTCGTGATCTTTGAAAGTTAAATAGCCTATTAAACCAAACTGAATTTAATCTTAACTGAAATCTCGGTGATTTAATACATGGATTGTAATTACTGAGGATGTGGGATGCAGGTTGTGTTTTATAAGAGGATTAATCGCGTCTTCTTCGTGGATTCCATCCCTAAAAGTCCTTCTGGCAAAATCTTGCGGAAACAACTTCGAAATTTGCTCGCAGCCAGTATTCCCAACTAGACCACAAACCCCTACAACTCTGAATAACTCAACTCTCTCTCTCTCTCTCTCTCTCAAATGTGTGTATGTAAAACAGAGAGAAGGATCTTCTGTGAGGGTTATGTTTATATAAAGTTATGTTCAGAGGCTGCAAGGAGCCCGCTCTGTAGTAAAAAACCAGCTGGTTTTCAAACTTTATATTTGTAATCAGCAGCAGTTTATGAAACAACGCTTATCTAAGTTTCGACTTTTGTTGTTAAGATACCAAGTTCATTTGGCTATACACCAATTGGAAGTTCT

mRNA sequence

CAAAATCAAAATATATTACTAATTTGTTTATTTCCAAATAAATATGCATAGTAGTTATTTATATAACAACTCACTTCACCAACTCCACAACTAGTTGCTATCTGCTTCTGCTCTCATCTCAAACCTCACTTCAACCAGTACACCAAAATTAAATCGACCTTTCACCTTCTTCATTCATTCCTCTACTTCCTTGCATTTCAACTCTGCAACAACCAACAACCACCCATGGCGGCCGCCGATCCCTCACCGGAATTCATATTCCGGTCAAAGCTCCCGGACATCACCATCCCCAACCACCTCCCCTTGCACACATATTGCTTCGAAAAGATCTCCCAATTCAAACACCGTCCATGTCTAATCAACGGCGCCACCGGCGACACCTACACCTACGGCGAAGTCCACGCAACAGCCCGCCGAGTCGCCGCCGGCCTCCACAAGCTCGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACAGCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTATATCGGCGCCACCGCCACCATGGCTAACCCGTTCTTCACTCCGCCAGAGATCGCGAAACACGCCGCGTCCTCCGGCGCCAAGCTGATCATAACCCAAGCCGCCTTCGCCGAGAAAGTGAAGAACCTCTCCGACGAAAACGACGCGATCGTCGAAGTCATATACATCGACCCTCCGCCGGACGGAGGATCTCATTTTTCGTCGTTGACCGATCACGCAAAAGAGGAGGAAATGCCGGATGTGAAGATCAGTCCCAACGACGTCGTCGCGTTGCCTTACTCGTCTGGCACTACGGGTCTCCCGAAAGGAGTGATGCTGACTCACAAGGGATTGGTGACCAGCGTGGCGCAACAAGTGGACGGTGAAAATCCGCACCTCTATATTCGAAGCGACGACGTCGTTTTGTGCGTGCTTCCTCTGTTTCACATCTATTCGCTGAACTCGATCATGATGTGCTCGTTGCGAGTCGGAGCCGCGATTTTGATCATACAGAAATTCGAAGTTAATTCGCTTGTGGAGTTGGTGCCGAAATATAAGGTGACGGTTGCGCCGTTTGTGCCGCCTATTGTATTGGCGATTGCGAAGAGCCCGGCTGTGGACCGTGCCGACATGTCGTCCATACGGATGGTGTTGTCGGGAGCGGCACCGCTCGGGAAGGAGCTTGAAGATGCGTTTAGAGCCAAGCTTCCGCATGCGATTCTCGGGCAGGGATATGGAATGACAGAGTCGGGGTCGGTGCTGACGATGTCCCTGGCGTTTGCAAAGGAGAGGTTCGAGATAAAATCAGGAGCTTGTGGGACAGTGATGAGAAATTCAAAGATGAAGATCATAAACCCTCAAACGGGAGTTTCTCTTCCAAGGAATCAACCTGGGGAGATTTGTATTAGAAGCCCTCAGATGATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATCGACGAAGACGGATGGCTTCACACCGGCGACATAGGTTTCGTCGACGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTGATTTCACACAGCCAGATCGCCGACGCTGCAGTTATCCCTTTGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGGTTCAACATCACCGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTTTATAAGAGGATTAATCGCGTCTTCTTCGTGGATTCCATCCCTAAAAGTCCTTCTGGCAAAATCTTGCGGAAACAACTTCGAAATTTGCTCGCAGCCAGTATTCCCAACTAGACCACAAACCCCTACAACTCTGAATAACTCAACTCTCTCTCTCTCTCTCTCTCTCAAATGTGTGTATGTAAAACAGAGAGAAGGATCTTCTGTGAGGGTTATGTTTATATAAAGTTATGTTCAGAGGCTGCAAGGAGCCCGCTCTGTAGTAAAAAACCAGCTGGTTTTCAAACTTTATATTTGTAATCAGCAGCAGTTTATGAAACAACGCTTATCTAAGTTTCGACTTTTGTTGTTAAGATACCAAGTTCATTTGGCTATACACCAATTGGAAGTTCT

Coding sequence (CDS)

ATGGCGGCCGCCGATCCCTCACCGGAATTCATATTCCGGTCAAAGCTCCCGGACATCACCATCCCCAACCACCTCCCCTTGCACACATATTGCTTCGAAAAGATCTCCCAATTCAAACACCGTCCATGTCTAATCAACGGCGCCACCGGCGACACCTACACCTACGGCGAAGTCCACGCAACAGCCCGCCGAGTCGCCGCCGGCCTCCACAAGCTCGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACAGCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTATATCGGCGCCACCGCCACCATGGCTAACCCGTTCTTCACTCCGCCAGAGATCGCGAAACACGCCGCGTCCTCCGGCGCCAAGCTGATCATAACCCAAGCCGCCTTCGCCGAGAAAGTGAAGAACCTCTCCGACGAAAACGACGCGATCGTCGAAGTCATATACATCGACCCTCCGCCGGACGGAGGATCTCATTTTTCGTCGTTGACCGATCACGCAAAAGAGGAGGAAATGCCGGATGTGAAGATCAGTCCCAACGACGTCGTCGCGTTGCCTTACTCGTCTGGCACTACGGGTCTCCCGAAAGGAGTGATGCTGACTCACAAGGGATTGGTGACCAGCGTGGCGCAACAAGTGGACGGTGAAAATCCGCACCTCTATATTCGAAGCGACGACGTCGTTTTGTGCGTGCTTCCTCTGTTTCACATCTATTCGCTGAACTCGATCATGATGTGCTCGTTGCGAGTCGGAGCCGCGATTTTGATCATACAGAAATTCGAAGTTAATTCGCTTGTGGAGTTGGTGCCGAAATATAAGGTGACGGTTGCGCCGTTTGTGCCGCCTATTGTATTGGCGATTGCGAAGAGCCCGGCTGTGGACCGTGCCGACATGTCGTCCATACGGATGGTGTTGTCGGGAGCGGCACCGCTCGGGAAGGAGCTTGAAGATGCGTTTAGAGCCAAGCTTCCGCATGCGATTCTCGGGCAGGGATATGGAATGACAGAGTCGGGGTCGGTGCTGACGATGTCCCTGGCGTTTGCAAAGGAGAGGTTCGAGATAAAATCAGGAGCTTGTGGGACAGTGATGAGAAATTCAAAGATGAAGATCATAAACCCTCAAACGGGAGTTTCTCTTCCAAGGAATCAACCTGGGGAGATTTGTATTAGAAGCCCTCAGATGATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATCGACGAAGACGGATGGCTTCACACCGGCGACATAGGTTTCGTCGACGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTGATTTCACACAGCCAGATCGCCGACGCTGCAGTTATCCCTTTGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGGTTCAACATCACCGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTTTATAAGAGGATTAATCGCGTCTTCTTCGTGGATTCCATCCCTAAAAGTCCTTCTGGCAAAATCTTGCGGAAACAACTTCGAAATTTGCTCGCAGCCAGTATTCCCAACTAG

Protein sequence

MAAADPSPEFIFRSKLPDITIPNHLPLHTYCFEKISQFKHRPCLINGATGDTYTYGEVHATARRVAAGLHKLGIGKGDVIMLLLQNSPQFVLAFLGASYIGATATMANPFFTPPEIAKHAASSGAKLIITQAAFAEKVKNLSDENDAIVEVIYIDPPPDGGSHFSSLTDHAKEEEMPDVKISPNDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIIQKFEVNSLVELVPKYKVTVAPFVPPIVLAIAKSPAVDRADMSSIRMVLSGAAPLGKELEDAFRAKLPHAILGQGYGMTESGSVLTMSLAFAKERFEIKSGACGTVMRNSKMKIINPQTGVSLPRNQPGEICIRSPQMMKGYLNDEEATKGIIDEDGWLHTGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHSQIADAAVIPLKDEVAGEVPVAFIVRSDGFNITEDEIKQYISKQVVFYKRINRVFFVDSIPKSPSGKILRKQLRNLLAASIPN
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
O241462.5e-22371.884-coumarate--CoA ligase 2 OS=Nicotiana tabacum OX=4097 GN=4CL2 PE=1 SV=1[more]
O241454.3e-22371.244-coumarate--CoA ligase 1 OS=Nicotiana tabacum OX=4097 GN=4CL1 PE=2 SV=1[more]
P316843.6e-22271.244-coumarate--CoA ligase 1 OS=Solanum tuberosum OX=4113 GN=4CL1 PE=3 SV=1[more]
M4ISH04.7e-22272.474-coumarate--CoA ligase CCL1 OS=Humulus lupulus OX=3486 GN=CCL1 PE=1 SV=1[more]
I3PB371.8e-22170.954-coumarate:CoA ligase 1 OS=Petunia hybrida OX=4102 GN=4CL1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1F6A32.7e-27388.264-coumarate--CoA ligase 2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1KTJ22.6e-27187.524-coumarate--CoA ligase 2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1JA641.2e-26585.504-coumarate--CoA ligase 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1E5C57.5e-26384.594-coumarate--CoA ligase 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A5D3CN418.8e-25684.364-coumarate--CoA ligase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
Match NameE-valueIdentityDescription
KAG6587759.11.0e-27488.814-coumarate--CoA ligase 1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023531498.18.7e-27488.074-coumarate--CoA ligase 1-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022933955.15.6e-27388.264-coumarate--CoA ligase 2-like isoform X1 [Cucurbita moschata][more]
XP_023003514.15.3e-27187.524-coumarate--CoA ligase 2-like isoform X1 [Cucurbita maxima][more]
XP_023515445.11.5e-26585.694-coumarate--CoA ligase 1-like isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT3G21240.17.2e-21068.024-coumarate:CoA ligase 2 [more]
AT1G51680.11.8e-20868.094-coumarate:CoA ligase 1 [more]
AT1G65060.14.9e-19863.724-coumarate:CoA ligase 3 [more]
AT1G51680.33.6e-19367.394-coumarate:CoA ligase 1 [more]
AT3G21230.12.0e-18861.074-coumarate:CoA ligase 5 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025110AMP-binding enzyme, C-terminal domainPFAMPF13193AMP-binding_Ccoord: 454..529
e-value: 3.9E-16
score: 59.8
IPR042099ANL, N-terminal domainGENE3D3.40.50.12780coord: 4..439
e-value: 4.0E-165
score: 551.7
NoneNo IPR availableGENE3D3.30.300.30coord: 440..542
e-value: 9.8E-32
score: 111.7
NoneNo IPR availablePANTHERPTHR24096LONG-CHAIN-FATTY-ACID--COA LIGASEcoord: 7..537
NoneNo IPR availablePANTHERPTHR24096:SF3344-COUMARATE:COA LIGASE-LIKE PROTEINcoord: 7..537
NoneNo IPR availableCDDcd059044CLcoord: 21..535
e-value: 0.0
score: 776.412
NoneNo IPR availableSUPERFAMILY56801Acetyl-CoA synthetase-likecoord: 11..541
IPR000873AMP-dependent synthetase/ligasePFAMPF00501AMP-bindingcoord: 33..445
e-value: 6.4E-112
score: 374.2
IPR020845AMP-binding, conserved sitePROSITEPS00455AMP_BINDINGcoord: 189..200

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g018260.1Lcy03g018260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016405 CoA-ligase activity