Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAATAAAGAAAAACAAAAGCCATGGCGAAGGATCATCATCATCTTCGTCTCTCTGAAAAACCCTTTTCATTACTCCAAGCAAATGAGTTATTCGTCAACAAAATCCTCTCCAGAAACTCTTCATTCGGCCGCTCTGCCCGTCTCCCCGCCTGCCGCCTGCCCGGCCAAATCCCCTTCAATTGGGAAGCGCAGCCCGGGCTGCCCAAAGACCAACCCTCGGAAATTCTCCCGCCGGCCGACCTCGAGCCACCGACCGGCTCCGGCTCCGGCGAAGGCCTCTCGAAACTCCCCCGCATAGTCCCCAAGCAGGAGCCTGTGAAGATTTGGTTTTGGAAAAAGCCGAAGAGAAAAGTCGTTGTTAGGAAAAACGGTGCGTTTGGATCGTCTTCAAGACGACATGTCGATCGTGAGAGTGAGCTTTGTAGAAAATCAAACGACGAGTCCGCGTCGTTGTCCTGTATTTCTTACTCCTTGTCTTCTAGTTCTTCTACGGCCTCGTCGTCACATGGCTATGACCGACGCCGGTCTAAACTCGGCAGCCTGGCCAAAGGGTTCATAAGGTGGGCCTTTTGATGGATTTTTTTTATTTTTATTTTTAAT
mRNA sequence
AAAAAAAAATAAAGAAAAACAAAAGCCATGGCGAAGGATCATCATCATCTTCGTCTCTCTGAAAAACCCTTTTCATTACTCCAAGCAAATGAGTTATTCGTCAACAAAATCCTCTCCAGAAACTCTTCATTCGGCCGCTCTGCCCGTCTCCCCGCCTGCCGCCTGCCCGGCCAAATCCCCTTCAATTGGGAAGCGCAGCCCGGGCTGCCCAAAGACCAACCCTCGGAAATTCTCCCGCCGGCCGACCTCGAGCCACCGACCGGCTCCGGCTCCGGCGAAGGCCTCTCGAAACTCCCCCGCATAGTCCCCAAGCAGGAGCCTGTGAAGATTTGGTTTTGGAAAAAGCCGAAGAGAAAAGTCGTTGTTAGGAAAAACGGTGCGTTTGGATCGTCTTCAAGACGACATGTCGATCGTGAGAGTGAGCTTTGTAGAAAATCAAACGACGAGTCCGCGTCGTTGTCCTGTATTTCTTACTCCTTGTCTTCTAGTTCTTCTACGGCCTCGTCGTCACATGGCTATGACCGACGCCGGTCTAAACTCGGCAGCCTGGCCAAAGGGTTCATAAGGTGGGCCTTTTGATGGATTTTTTTTATTTTTATTTTTAAT
Coding sequence (CDS)
ATGGCGAAGGATCATCATCATCTTCGTCTCTCTGAAAAACCCTTTTCATTACTCCAAGCAAATGAGTTATTCGTCAACAAAATCCTCTCCAGAAACTCTTCATTCGGCCGCTCTGCCCGTCTCCCCGCCTGCCGCCTGCCCGGCCAAATCCCCTTCAATTGGGAAGCGCAGCCCGGGCTGCCCAAAGACCAACCCTCGGAAATTCTCCCGCCGGCCGACCTCGAGCCACCGACCGGCTCCGGCTCCGGCGAAGGCCTCTCGAAACTCCCCCGCATAGTCCCCAAGCAGGAGCCTGTGAAGATTTGGTTTTGGAAAAAGCCGAAGAGAAAAGTCGTTGTTAGGAAAAACGGTGCGTTTGGATCGTCTTCAAGACGACATGTCGATCGTGAGAGTGAGCTTTGTAGAAAATCAAACGACGAGTCCGCGTCGTTGTCCTGTATTTCTTACTCCTTGTCTTCTAGTTCTTCTACGGCCTCGTCGTCACATGGCTATGACCGACGCCGGTCTAAACTCGGCAGCCTGGCCAAAGGGTTCATAAGGTGGGCCTTTTGA
Protein sequence
MAKDHHHLRLSEKPFSLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQPSEILPPADLEPPTGSGSGEGLSKLPRIVPKQEPVKIWFWKKPKRKVVVRKNGAFGSSSRRHVDRESELCRKSNDESASLSCISYSLSSSSSTASSSHGYDRRRSKLGSLAKGFIRWAF
Homology
BLAST of Lcy03g018140 vs. ExPASy TrEMBL
Match:
A0A5A7UQX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005980 PE=4 SV=1)
HSP 1 Score: 251.1 bits (640), Expect = 3.5e-63
Identity = 145/191 (75.92%), Postives = 156/191 (81.68%), Query Frame = 0
Query: 2 AKDHHHLRLSEKPFSLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLP 61
AKDH RLSEKPFSLLQAN+ FV+KILSRNSSFGRSARLPAC LPGQIPFNWE QPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLP 62
Query: 62 KDQPSEILPPADLEPPTGSGSGEGLSKLPRIVPKQEPVKIWFWKKPKRKV--VVRKNGAF 121
K+QPSE PPA+L PP S S GLSK P +VPKQ PVKIWFW K +RK V+KNGA
Sbjct: 63 KNQPSETPPPAELPPP--SSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 122
Query: 122 GSSS--RRHVDRESELC-RKSNDE---SASLSCISYSLSSSSSTASSSHGY-DRRRSKLG 181
GSSS RRHVDRESE C RKSNDE S+SLSCISYSLSS+SS+ASSS Y +RRRSKLG
Sbjct: 123 GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 182
Query: 182 SLAKGFIRWAF 184
SLAK FIRWAF
Sbjct: 183 SLAKEFIRWAF 191
BLAST of Lcy03g018140 vs. ExPASy TrEMBL
Match:
A0A5D3CKX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00370 PE=4 SV=1)
HSP 1 Score: 249.2 bits (635), Expect = 1.3e-62
Identity = 144/191 (75.39%), Postives = 155/191 (81.15%), Query Frame = 0
Query: 2 AKDHHHLRLSEKPFSLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLP 61
AKDH RLSEKPFSLLQAN+ FV+KILSRNSSFGRSARLPAC LPGQIPFNWE QPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLP 62
Query: 62 KDQPSEILPPADLEPPTGSGSGEGLSKLPRIVPKQEPVKIWFWKKPKRKV--VVRKNGAF 121
K+QPSE PPA+L PP S S GLSK P +VPKQ PVKIWFW K +RK V+KNGA
Sbjct: 63 KNQPSETPPPAELPPP--SSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 122
Query: 122 GSSS--RRHVDRESELC-RKSND---ESASLSCISYSLSSSSSTASSSHGY-DRRRSKLG 181
GSSS RRHVDRESE C RKSND S+SLSCISYSLSS+SS+ASSS Y +RRRSKLG
Sbjct: 123 GSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 182
Query: 182 SLAKGFIRWAF 184
SLAK FIRWAF
Sbjct: 183 SLAKEFIRWAF 191
BLAST of Lcy03g018140 vs. ExPASy TrEMBL
Match:
A0A0A0LWV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1)
HSP 1 Score: 243.4 bits (620), Expect = 7.2e-61
Identity = 140/190 (73.68%), Postives = 155/190 (81.58%), Query Frame = 0
Query: 2 AKDHHHLRLSEKPFSLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLP 61
AKDH RLSEKPFSLLQAN+LFV+KILSRNSSFGRSARLPAC LPGQ+PFNWEAQPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLP 62
Query: 62 KDQPSEILPPADLEPPTGSGSGEGLSKLPRIVPKQEPVKIWFWKKPKRKV--VVRKNGAF 121
K+QPS+ PP L PP S S GLSK P +VPKQ PVKIWFW K +RK V+K+GA
Sbjct: 63 KNQPSDNPPPVKLPPP--SSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGAL 122
Query: 122 GSSS-RRHVDRESELCR-KSNDE---SASLSCISYSLSSSSSTASSSHGY-DRRRSKLGS 181
GSSS RRHVDR+SE CR KSNDE S+SLSCISYS+SS+SS+ASSS Y +RRR KLGS
Sbjct: 123 GSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGS 182
Query: 182 LAKGFIRWAF 184
LAK FIRWAF
Sbjct: 183 LAKEFIRWAF 190
BLAST of Lcy03g018140 vs. ExPASy TrEMBL
Match:
A0A6J1JJ17 (uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037 PE=4 SV=1)
HSP 1 Score: 221.9 bits (564), Expect = 2.3e-54
Identity = 131/189 (69.31%), Postives = 145/189 (76.72%), Query Frame = 0
Query: 6 HHLRLSEKPFSLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQP 65
H L SE PFSLLQANELFV+KILSRNSS GRSARLPACRLPGQIPF WEAQPGLPKD+P
Sbjct: 5 HRLHPSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKDKP 64
Query: 66 SEILPPADLEPPTGSGSGEGLSKLPRIVPK-QEPVKIWFWKKPKRKV--VVRKNGAFG-- 125
SE +L PP +G SK P VPK QE KIW W KP++K+ VV+KNGAFG
Sbjct: 65 SE-----NLHPPPPPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRNVVKKNGAFGSS 124
Query: 126 SSSRRHVDRESELCRKSNDES------ASLSCISYSLSSSSSTASSSHGYDRRRSKLGSL 184
SSSR HV++ESE CRKSNDES +SLSCIS+SLSSSS SSS+GY RRRSKL SL
Sbjct: 125 SSSRPHVNQESEFCRKSNDESSSSTTPSSLSCISHSLSSSS---SSSNGYARRRSKLSSL 184
BLAST of Lcy03g018140 vs. ExPASy TrEMBL
Match:
A0A314YA94 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07660 PE=4 SV=1)
HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 74/208 (35.58%), Postives = 107/208 (51.44%), Query Frame = 0
Query: 13 KPFSLLQANELFVNKILSRNSSFGRSARLPAC--RLPGQIPFNWEAQPGLPK----DQPS 72
K ++ ANE F NKILSRNSS G S+ R+ G +PF WEA+PG PK D+
Sbjct: 12 KTLAIFPANEFFYNKILSRNSSVGSSSSRSYYFGRVTGSVPFQWEAKPGKPKLEAHDEEQ 71
Query: 73 E--------ILPPADLEPPTGSGSGEGLSKLPRIVPKQEPVKIWFWKKPKR--------K 132
+ PP + PP + S ++ LP ++W WKK K+ K
Sbjct: 72 QQHQNFDFAQNPPLIIGPPPATQS-LNMNSLPYSSGPFSNSRVWLWKKLKKTHKLKRKLK 131
Query: 133 VVVRKNGA--FGSSSRRHVDRESELCRKSNDE--------SASLSCISYSLSSS-----S 184
+ + NG F ++ + +++LC KS++E S+S SC S SLSS+ S
Sbjct: 132 KINKNNGEGNFDNAGLEQLYHQADLC-KSDEEIMKFGSYGSSSSSCNSSSLSSTASASGS 191
BLAST of Lcy03g018140 vs. NCBI nr
Match:
KAA0058272.1 (hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa])
HSP 1 Score: 251.1 bits (640), Expect = 7.2e-63
Identity = 145/191 (75.92%), Postives = 156/191 (81.68%), Query Frame = 0
Query: 2 AKDHHHLRLSEKPFSLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLP 61
AKDH RLSEKPFSLLQAN+ FV+KILSRNSSFGRSARLPAC LPGQIPFNWE QPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLP 62
Query: 62 KDQPSEILPPADLEPPTGSGSGEGLSKLPRIVPKQEPVKIWFWKKPKRKV--VVRKNGAF 121
K+QPSE PPA+L PP S S GLSK P +VPKQ PVKIWFW K +RK V+KNGA
Sbjct: 63 KNQPSETPPPAELPPP--SSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 122
Query: 122 GSSS--RRHVDRESELC-RKSNDE---SASLSCISYSLSSSSSTASSSHGY-DRRRSKLG 181
GSSS RRHVDRESE C RKSNDE S+SLSCISYSLSS+SS+ASSS Y +RRRSKLG
Sbjct: 123 GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 182
Query: 182 SLAKGFIRWAF 184
SLAK FIRWAF
Sbjct: 183 SLAKEFIRWAF 191
BLAST of Lcy03g018140 vs. NCBI nr
Match:
TYK11824.1 (hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 249.2 bits (635), Expect = 2.7e-62
Identity = 144/191 (75.39%), Postives = 155/191 (81.15%), Query Frame = 0
Query: 2 AKDHHHLRLSEKPFSLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLP 61
AKDH RLSEKPFSLLQAN+ FV+KILSRNSSFGRSARLPAC LPGQIPFNWE QPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLP 62
Query: 62 KDQPSEILPPADLEPPTGSGSGEGLSKLPRIVPKQEPVKIWFWKKPKRKV--VVRKNGAF 121
K+QPSE PPA+L PP S S GLSK P +VPKQ PVKIWFW K +RK V+KNGA
Sbjct: 63 KNQPSETPPPAELPPP--SSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 122
Query: 122 GSSS--RRHVDRESELC-RKSND---ESASLSCISYSLSSSSSTASSSHGY-DRRRSKLG 181
GSSS RRHVDRESE C RKSND S+SLSCISYSLSS+SS+ASSS Y +RRRSKLG
Sbjct: 123 GSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 182
Query: 182 SLAKGFIRWAF 184
SLAK FIRWAF
Sbjct: 183 SLAKEFIRWAF 191
BLAST of Lcy03g018140 vs. NCBI nr
Match:
KGN65459.1 (hypothetical protein Csa_020126 [Cucumis sativus])
HSP 1 Score: 243.4 bits (620), Expect = 1.5e-60
Identity = 140/190 (73.68%), Postives = 155/190 (81.58%), Query Frame = 0
Query: 2 AKDHHHLRLSEKPFSLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLP 61
AKDH RLSEKPFSLLQAN+LFV+KILSRNSSFGRSARLPAC LPGQ+PFNWEAQPGLP
Sbjct: 3 AKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLP 62
Query: 62 KDQPSEILPPADLEPPTGSGSGEGLSKLPRIVPKQEPVKIWFWKKPKRKV--VVRKNGAF 121
K+QPS+ PP L PP S S GLSK P +VPKQ PVKIWFW K +RK V+K+GA
Sbjct: 63 KNQPSDNPPPVKLPPP--SSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGAL 122
Query: 122 GSSS-RRHVDRESELCR-KSNDE---SASLSCISYSLSSSSSTASSSHGY-DRRRSKLGS 181
GSSS RRHVDR+SE CR KSNDE S+SLSCISYS+SS+SS+ASSS Y +RRR KLGS
Sbjct: 123 GSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGS 182
Query: 182 LAKGFIRWAF 184
LAK FIRWAF
Sbjct: 183 LAKEFIRWAF 190
BLAST of Lcy03g018140 vs. NCBI nr
Match:
KAG6589705.1 (Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 222.6 bits (566), Expect = 2.7e-54
Identity = 130/183 (71.04%), Postives = 147/183 (80.33%), Query Frame = 0
Query: 4 DHHHLRLSEKPFSLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKD 63
+ H L LSE PFSLLQANELFV+KILSRNSS GRSARLPACRLPGQIPF WEAQPGLPKD
Sbjct: 3 NEHRLHLSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 62
Query: 64 QPSEILPPADLEPPTGSGSGEGLSKLPRIVP-KQEPVKIWFWKKPKRKV--VVRKNGAFG 123
+PSE +L+PP S +G SK P VP +QE KIWFW KP++K+ VV+KNGAFG
Sbjct: 63 KPSE-----NLQPPPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFG 122
Query: 124 --SSSRRHVDRESELCRKSNDE-SASLSCISYSLSSSSSTASSSHGYDRRRSKLGSLAKG 181
SSSRRHV++ESE RKSNDE S+SLSCIS+SLSSSS SSS+GY RRRSKL SLAKG
Sbjct: 123 SSSSSRRHVNQESEFYRKSNDESSSSLSCISHSLSSSS---SSSNGYARRRSKLSSLAKG 177
BLAST of Lcy03g018140 vs. NCBI nr
Match:
XP_022987494.1 (uncharacterized protein LOC111485037 [Cucurbita maxima])
HSP 1 Score: 221.9 bits (564), Expect = 4.6e-54
Identity = 131/189 (69.31%), Postives = 145/189 (76.72%), Query Frame = 0
Query: 6 HHLRLSEKPFSLLQANELFVNKILSRNSSFGRSARLPACRLPGQIPFNWEAQPGLPKDQP 65
H L SE PFSLLQANELFV+KILSRNSS GRSARLPACRLPGQIPF WEAQPGLPKD+P
Sbjct: 5 HRLHPSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKDKP 64
Query: 66 SEILPPADLEPPTGSGSGEGLSKLPRIVPK-QEPVKIWFWKKPKRKV--VVRKNGAFG-- 125
SE +L PP +G SK P VPK QE KIW W KP++K+ VV+KNGAFG
Sbjct: 65 SE-----NLHPPPPPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRNVVKKNGAFGSS 124
Query: 126 SSSRRHVDRESELCRKSNDES------ASLSCISYSLSSSSSTASSSHGYDRRRSKLGSL 184
SSSR HV++ESE CRKSNDES +SLSCIS+SLSSSS SSS+GY RRRSKL SL
Sbjct: 125 SSSRPHVNQESEFCRKSNDESSSSTTPSSLSCISHSLSSSS---SSSNGYARRRSKLSSL 184
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UQX0 | 3.5e-63 | 75.92 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3CKX4 | 1.3e-62 | 75.39 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A0A0LWV3 | 7.2e-61 | 73.68 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1 | [more] |
| A0A6J1JJ17 | 2.3e-54 | 69.31 | uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037... | [more] |
| A0A314YA94 | 1.2e-12 | 35.58 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_076... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0058272.1 | 7.2e-63 | 75.92 | hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa] | [more] |
| TYK11824.1 | 2.7e-62 | 75.39 | hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa] | [more] |
| KGN65459.1 | 1.5e-60 | 73.68 | hypothetical protein Csa_020126 [Cucumis sativus] | [more] |
| KAG6589705.1 | 2.7e-54 | 71.04 | Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... | [more] |
| XP_022987494.1 | 4.6e-54 | 69.31 | uncharacterized protein LOC111485037 [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
