Lcy03g018090 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g018090
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like
Location	Chr03: 51849614 .. 51851022 (+)
RNA-Seq Expression	Lcy03g018090
Synteny	Lcy03g018090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAAACGAAGCGAAACGGGTGCTTCTGTGATTTTGCAGAAAGCCAAGGGCTTTTCCCGCTCATCGCAAAACCCCAACTCCGATAGCTAATTTCTTCACAGTATCGGAGATCTTCCCAAGTCCACCATGGTCGACCGTGAACGAGATCGAGACAGAACCCGCGATAGAGATAAAGATCGGGACCGTGATAGATACAAAGATCGGGAGCGAGACCGTGACCACCGTGAGCGTGATCGGGACCGGGACCGGGAACGGGAACGGCGAAGGGATCGAGAAGACCGTGACCGTGAACGGGAGCGTGGCCGGAGTAAAAGGTCACACACTCCTGACCGCCCCAGATCCCGCCATACTCGCTCTCGCACCCGATCGCCGGACCGGCATCGGTCGCGTTCTCTTTCCCGTTCCCCTGAGGACCGATCCCTTCGCCGCCGCCATCGCTCGCCTTCCCCCGAACATGCTCGGAAGCGTCATCGCCGGGATTTGACTGTGGATGATGAAAAGGAGAGGCAGAAAGCAGTGTCTGATTTCGTTGATGGCATTGCGAAGGAGCAGCACAAGCAGAAGAAAAACAAAGATGGTGGCGGAGAAGTAGTGGAGGAGGCCGTGGCTGATGAGGATGAAATCGAGATGATGAAGAAATTAGGTATTCCTGTGGGTTTTGATTCGACGAAGGGCAAGCCTGTTCCTGGTGCTGATGTGAGTGGCGTTAGGGTAGTGACAAAGAGGCAGCCTAGGCAATACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCCGAGCGGACTCGGTAGTTAATTGATTTGGCTTGGTCACCGAGGTTAGTATATTGTAGATGTATTGCTTCTCAGTTTTTTTATTTCTTTGCTCACATGGTCTTCTTTGCTCCTGAGAATGCTCCTTGTTCTTTCTCATTGAGAGGACACTAGTTTCTTTGTCAATTTTATCTGTTTAGAGGGTTTTTAGATGTCACCAGTAGTTATTTGAATGTGGAAATACGAACTTTTCACACATTTCAAAATATAACCAAACAGTTTGAACTTCTTTCGTAACATTTTGCCCGTACAAGAGTTGAAGATAGGATCATACATTTTCTAGTATTATCAAAGTGAACTTGAAGGACCCCCAAATTTTATTGAACATATTTTGGCATTTAAGGAAACATTGTGACGTGCTTGTTTCAAATGCAACTCCATAACCTTTAGATGTGGTATAAGGATCAAGCTCCTTGTAGAAAAATGTTGATCCTAAATTGAATTTGTGTATGGTAGATTGAAAGATCAGTTTCTTATGTGAGTTAGTATGTTTATGGCTATTATGAGCCAACAGTTGATGGAAGTTAAAAAATGATGAATTTAGGTACATTGTCAGACTTGCTGATATATAAAATAGGACTTAGTGTTGTTG

mRNA sequence

CTCAAAACGAAGCGAAACGGGTGCTTCTGTGATTTTGCAGAAAGCCAAGGGCTTTTCCCGCTCATCGCAAAACCCCAACTCCGATAGCTAATTTCTTCACAGTATCGGAGATCTTCCCAAGTCCACCATGGTCGACCGTGAACGAGATCGAGACAGAACCCGCGATAGAGATAAAGATCGGGACCGTGATAGATACAAAGATCGGGAGCGAGACCGTGACCACCGTGAGCGTGATCGGGACCGGGACCGGGAACGGGAACGGCGAAGGGATCGAGAAGACCGTGACCGTGAACGGGAGCGTGGCCGGAGTAAAAGGTCACACACTCCTGACCGCCCCAGATCCCGCCATACTCGCTCTCGCACCCGATCGCCGGACCGGCATCGGTCGCGTTCTCTTTCCCGTTCCCCTGAGGACCGATCCCTTCGCCGCCGCCATCGCTCGCCTTCCCCCGAACATGCTCGGAAGCGTCATCGCCGGGATTTGACTGTGGATGATGAAAAGGAGAGGCAGAAAGCAGTGTCTGATTTCGTTGATGGCATTGCGAAGGAGCAGCACAAGCAGAAGAAAAACAAAGATGGTGGCGGAGAAGTAGTGGAGGAGGCCGTGGCTGATGAGGATGAAATCGAGATGATGAAGAAATTAGGTATTCCTGTGGGTTTTGATTCGACGAAGGGCAAGCCTGTTCCTGGTGCTGATGTGAGTGGCGTTAGGGTAGTGACAAAGAGGCAGCCTAGGCAATACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCCGAGCGGACTCGGTAGTTAATTGATTTGGCTTGGTCACCGAGGTTAGTATATTGTAGATGTATTGCTTCTCAGTTTTTTTATTTCTTTGCTCACATGGTCTTCTTTGCTCCTGAGAATGCTCCTTGTTCTTTCTCATTGAGAGGACACTAGTTTCTTTGTCAATTTTATCTGTTTAGAGGGTTTTTAGATGTCACCAGTAGTTATTTGAATGTGGAAATACGAACTTTTCACACATTTCAAAATATAACCAAACAGTTTGAACTTCTTTCGTAACATTTTGCCCGTACAAGAGTTGAAGATAGGATCATACATTTTCTAGTATTATCAAAGTGAACTTGAAGGACCCCCAAATTTTATTGAACATATTTTGGCATTTAAGGAAACATTGTGACGTGCTTGTTTCAAATGCAACTCCATAACCTTTAGATGTGGTATAAGGATCAAGCTCCTTGTAGAAAAATGTTGATCCTAAATTGAATTTGTGTATGGTAGATTGAAAGATCAGTTTCTTATGTGAGTTAGTATGTTTATGGCTATTATGAGCCAACAGTTGATGGAAGTTAAAAAATGATGAATTTAGGTACATTGTCAGACTTGCTGATATATAAAATAGGACTTAGTGTTGTTG

Coding sequence (CDS)

ATGGTCGACCGTGAACGAGATCGAGACAGAACCCGCGATAGAGATAAAGATCGGGACCGTGATAGATACAAAGATCGGGAGCGAGACCGTGACCACCGTGAGCGTGATCGGGACCGGGACCGGGAACGGGAACGGCGAAGGGATCGAGAAGACCGTGACCGTGAACGGGAGCGTGGCCGGAGTAAAAGGTCACACACTCCTGACCGCCCCAGATCCCGCCATACTCGCTCTCGCACCCGATCGCCGGACCGGCATCGGTCGCGTTCTCTTTCCCGTTCCCCTGAGGACCGATCCCTTCGCCGCCGCCATCGCTCGCCTTCCCCCGAACATGCTCGGAAGCGTCATCGCCGGGATTTGACTGTGGATGATGAAAAGGAGAGGCAGAAAGCAGTGTCTGATTTCGTTGATGGCATTGCGAAGGAGCAGCACAAGCAGAAGAAAAACAAAGATGGTGGCGGAGAAGTAGTGGAGGAGGCCGTGGCTGATGAGGATGAAATCGAGATGATGAAGAAATTAGGTATTCCTGTGGGTTTTGATTCGACGAAGGGCAAGCCTGTTCCTGGTGCTGATGTGAGTGGCGTTAGGGTAGTGACAAAGAGGCAGCCTAGGCAATACATGAATCGTCGTGGCGGGTTCAACCGGCCGTTGCCGGCCGAGCGGACTCGGTAG

Protein sequence

MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGRSKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLTVDDEKERQKAVSDFVDGIAKEQHKQKKNKDGGGEVVEEAVADEDEIEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR

Homology

[Close]

BLAST of Lcy03g018090 vs. ExPASy Swiss-Prot
Match: Q8K194 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090 GN=Snrnp27 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10
Identity = 80/183 (43.72%), Postives = 101/183 (55.19%), Query Frame = 0


Query: 35  RDRDRDRERERRRDREDRDRERERGRSKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSP 94
           R R R   RERRR R    R+RER R +RS + +R R    RSR+RSP R RSRS     
Sbjct: 3   RSRSRSPRRERRRSR-STSRDRERRRRERSRSRERDR---RRSRSRSPHRRRSRS----- 62

Query: 95  EDRSLRRRHRSPSPEHARKRHRRDLTVDDEKERQKAVSDFVDGIAKEQHKQKKNKDGGGE 154
                 RRHRS SP  +R + RR    D+EK+  K +        K + +Q   +D  G+
Sbjct: 63  -----PRRHRSTSPSPSRLKERR----DEEKKETKEI--------KNKERQITEEDLEGK 122

Query: 155 VVEEAVADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYMNRRGGFN 214
                   E+EIEMMK +G    FDSTKGK V G+ +   + V  KR+ RQYMNR+GGFN
Sbjct: 123 T-------EEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFN 151

Query: 215 RPL 217
           RPL
Sbjct: 183 RPL 151

[Close]

BLAST of Lcy03g018090 vs. ExPASy Swiss-Prot
Match: Q8WVK2 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP27 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 81/183 (44.26%), Postives = 100/183 (54.64%), Query Frame = 0


Query: 35  RDRDRDRERERRRDREDRDRERERGRSKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSP 94
           R R R   RERRR R    RERER R +RS + +R R    RSR+RSP R RSRS     
Sbjct: 3   RSRSRSPRRERRRSR-STSRERERRRRERSRSRERDR---RRSRSRSPHRRRSRS----- 62

Query: 95  EDRSLRRRHRSPSPEHARKRHRRDLTVDDEKERQKAVSDFVDGIAKEQHKQKKNKDGGGE 154
                 RRHRS SP  +R + RR    D+EK+  K          K + +Q   +D  G+
Sbjct: 63  -----PRRHRSTSPSPSRLKERR----DEEKKETKE--------TKSKERQITEEDLEGK 122

Query: 155 VVEEAVADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYMNRRGGFN 214
                   E+EIEMMK +G    FDSTKGK V G+ +   + V  KR+ RQYMNR+GGFN
Sbjct: 123 T-------EEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQKRKYRQYMNRKGGFN 151

Query: 215 RPL 217
           RPL
Sbjct: 183 RPL 151

[Close]

BLAST of Lcy03g018090 vs. ExPASy Swiss-Prot
Match: Q6GLZ8 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=8355 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.8e-10
Identity = 81/190 (42.63%), Postives = 101/190 (53.16%), Query Frame = 0


Query: 33  RERDRDRDRERERRRDREDRDRERERGRSKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSR 92
           R R R  +R RERRR R    RERER R +RS + +R      RSR+RSP R RSRS   
Sbjct: 3   RSRSRSPERRRERRRSR-SASRERERRRRERSRSRER-----RRSRSRSPHRRRSRS--- 62

Query: 93  SPEDRSLRRRHRSPSPEHARKRHRRDLTVDDEKERQKAVSDFVDGIAKEQHKQKKNKDGG 152
                   RRHRS S   +R + RRD   DD+KE                   K++K GG
Sbjct: 63  -------PRRHRSSSISPSRLKDRRD---DDKKE------------------PKESKGGG 122

Query: 153 GEVVEEAVAD-----EDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYM 212
            +  + A  D     E+EIEMMK +G    FDS+KGK   G+ +   + V  KR+ RQYM
Sbjct: 123 SKERQLAAEDLEGKTEEEIEMMKLMGF-ASFDSSKGKKTDGSVNAYAINVSQKRKYRQYM 154

Query: 213 NRRGGFNRPL 217
           NR+GGFNRPL
Sbjct: 183 NRKGGFNRPL 154

[Close]

BLAST of Lcy03g018090 vs. ExPASy Swiss-Prot
Match: Q6DDA4 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX=8364 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-09
Identity = 78/185 (42.16%), Postives = 102/185 (55.14%), Query Frame = 0


Query: 33  RERDRDRDRERERRRDREDRDRERERGRSKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSR 92
           R R R  +R RERRR R    RERER R +RS + +R      RSR+RSP R RSRS   
Sbjct: 3   RSRSRSPERRRERRRSR-SASRERERRRRERSRSRER-----RRSRSRSPHRRRSRS--- 62

Query: 93  SPEDRSLRRRHRSPSPEHARKRHRRDLTVDDEKERQKAVSDFVDGIAKEQHKQKKNKDGG 152
                   RRHRS S    R + RRD   DD+K+ +++        AKE+    ++ +G 
Sbjct: 63  -------PRRHRSSSISPGRLKDRRD---DDKKDSKESKG------AKERQIAAEDLEG- 122

Query: 153 GEVVEEAVADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYMNRRGG 212
                     E+EIEMMK +G    FD++KGK V G+ +   + V  KR+ RQYMNR+GG
Sbjct: 123 --------KTEEEIEMMKMMGFAT-FDTSKGKKVDGSVNAYAINVSQKRKYRQYMNRKGG 152

Query: 213 FNRPL 217
           FNRPL
Sbjct: 183 FNRPL 152

[Close]

BLAST of Lcy03g018090 vs. ExPASy Swiss-Prot
Match: Q6DH74 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.9e-06
Identity = 79/190 (41.58%), Postives = 95/190 (50.00%), Query Frame = 0


Query: 28  RDRDHRERDRDRDRERERRRDREDRDRERERGRSKRSHTPDRPRSRHTRSRTRSPDRHRS 87
           R R      R+R R R   RDRE R RERER RS+     DR R    RSR+RSP R RS
Sbjct: 3   RSRSRTPPRRERRRSRSSSRDRERRRRERERSRSR-----DRDR---RRSRSRSPHRRRS 62

Query: 88  RSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLTVDDEKERQKAVSDFVDGIAKEQHKQKK 147
           RS           RRHRS S    R++ RRD    D KE+   V      I+ E  + K 
Sbjct: 63  RS----------PRRHRSSSLSPLRQKDRRDDDRKDVKEKPAKVHQ----ISAEDMQGK- 122

Query: 148 NKDGGGEVVEEAVADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPRQYM 207
                          E+EIEMMK +G    F+++KGK   G+     V V  KR+ RQYM
Sbjct: 123 --------------TEEEIEMMKLMGFG-SFETSKGKKKDGSIKAFAVNVSQKRKYRQYM 154

Query: 208 NRRGGFNRPL 217
           NR+GGFNRPL
Sbjct: 183 NRKGGFNRPL 154

[Close]

BLAST of Lcy03g018090 vs. ExPASy TrEMBL
Match: A0A6J1L1Y6 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111499666 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.3e-96
Identity = 213/224 (95.09%), Postives = 217/224 (96.88%), Query Frame = 0


Query: 1   MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60
           MVDRERDRDR RDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDR+DRDRERERGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDRDDRDRERERGR 60

Query: 61  SKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPDR RSRHTRSRTRSPD+HR+RSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRLRSRHTRSRTRSPDQHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120

Query: 121 VDDEKERQKAVSDFVDGIAKEQHKQKKNKD--GGGEVVEEAVADEDEIEMMKKLGIPVGF 180
           VDD+KERQK VSDFVDGIAKEQHKQKKNKD  GG EVVEEAVADEDEIEMMKKLGIPVGF
Sbjct: 121 VDDDKERQKVVSDFVDGIAKEQHKQKKNKDRVGGEEVVEEAVADEDEIEMMKKLGIPVGF 180

Query: 181 DSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           DSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 DSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of Lcy03g018090 vs. ExPASy TrEMBL
Match: A0A6J1EW85 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111436672 PE=3 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.6e-94
Identity = 212/224 (94.64%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 1   MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60
           MVDRERDRDR RDRDKDRDRDRYKDRERDRDHRE  RDRDRERERRRDREDRDRERERGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRE--RDRDRERERRRDREDRDRERERGR 60

Query: 61  SKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPDR RSRHTRSRTRS DRHR+RSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRLRSRHTRSRTRSLDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120

Query: 121 VDDEKERQKAVSDFVDGIAKEQHKQKKNKD--GGGEVVEEAVADEDEIEMMKKLGIPVGF 180
           VDD+KERQK VSDFVDGIAKEQHKQKKNKD  GG EVVEEAVADEDEIEMMKKLGIPVGF
Sbjct: 121 VDDDKERQKVVSDFVDGIAKEQHKQKKNKDSVGGEEVVEEAVADEDEIEMMKKLGIPVGF 180

Query: 181 DSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           DSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 DSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 222

[Close]

BLAST of Lcy03g018090 vs. ExPASy TrEMBL
Match: A0A6J1C0K3 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Momordica charantia OX=3673 GN=LOC111007178 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.1e-91
Identity = 206/228 (90.35%), Postives = 211/228 (92.54%), Query Frame = 0


Query: 1   MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60
           MVDRERDRDR RDRDKDRDRDRYKDRERDRDHRERD      RERRRDR+DRDRERERGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD------RERRRDRDDRDRERERGR 60

Query: 61  SKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPDR RSRHTRSRTRSPDRHRSRSLSR+PEDRS RRRHR+PSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRTRSRHTRSRTRSPDRHRSRSLSRTPEDRSGRRRHRTPSPEHARKRHRRDLT 120

Query: 121 VDDEKERQKAVSDFVDGIAKEQHKQKKNKD------GGGEVVEEAVADEDEIEMMKKLGI 180
            DDEKERQKAVSDFVDGIAKEQHKQKKNKD      GGGEVVEEA+ADEDEIEMMKKLGI
Sbjct: 121 ADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGGGGGGEVVEEAMADEDEIEMMKKLGI 180

Query: 181 PVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           PVGFDSTKGKPV GADVSGVRVVTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 PVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 222

[Close]

BLAST of Lcy03g018090 vs. ExPASy TrEMBL
Match: A0A5D3CK71 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00330 PE=3 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 2.0e-89
Identity = 207/234 (88.46%), Postives = 213/234 (91.03%), Query Frame = 0


Query: 1   MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERD----------RDRDRERERRRDRE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERDRDHRERD          R+RDR+RERRRD +
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDRERERGRSKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEH 120
           DRDRERERGRSKRSHTPDR RSR  RSRTRSPDRHRSRSLSR+PEDRS RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTVDDEKERQKAVSDFVDGIAKEQHKQKKNKD--GGGEVVEEAVADEDEIEM 180
           ARKRHRRDLT DDEKERQKAVSDFVDGIAKEQHKQK NKD  G GEVVEEA+ADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]

BLAST of Lcy03g018090 vs. ExPASy TrEMBL
Match: A0A1S3BW27 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 GN=LOC103494258 PE=3 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 2.0e-89
Identity = 207/234 (88.46%), Postives = 213/234 (91.03%), Query Frame = 0


Query: 1   MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERD----------RDRDRERERRRDRE 60
           MVDRERDRDR RDRDKDRDRDRYKDRERDRDHRERD          R+RDR+RERRRD +
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDRERERGRSKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEH 120
           DRDRERERGRSKRSHTPDR RSR  RSRTRSPDRHRSRSLSR+PEDRS RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTVDDEKERQKAVSDFVDGIAKEQHKQKKNKD--GGGEVVEEAVADEDEIEM 180
           ARKRHRRDLT DDEKERQKAVSDFVDGIAKEQHKQK NKD  G GEVVEEA+ADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

[Close]

BLAST of Lcy03g018090 vs. NCBI nr
Match: XP_023530476.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530477.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530478.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530479.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.2 bits (936), Expect = 4.1e-97
Identity = 215/224 (95.98%), Postives = 217/224 (96.88%), Query Frame = 0


Query: 1   MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60
           MVDRERDRDR RDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60

Query: 61  SKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPDR RSRHTRSRTRSPDRHR+RSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRLRSRHTRSRTRSPDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120

Query: 121 VDDEKERQKAVSDFVDGIAKEQHKQKKNKD--GGGEVVEEAVADEDEIEMMKKLGIPVGF 180
           VDD+KERQK VSDFVDGIAKEQHKQKKNKD  GG EVVEEAVADEDEIEMMKKLGIPVGF
Sbjct: 121 VDDDKERQKVVSDFVDGIAKEQHKQKKNKDGVGGEEVVEEAVADEDEIEMMKKLGIPVGF 180

Query: 181 DSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           DSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 DSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of Lcy03g018090 vs. NCBI nr
Match: XP_023007065.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima] >XP_023007073.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 362.5 bits (929), Expect = 2.7e-96
Identity = 213/224 (95.09%), Postives = 217/224 (96.88%), Query Frame = 0


Query: 1   MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60
           MVDRERDRDR RDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDR+DRDRERERGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDRDDRDRERERGR 60

Query: 61  SKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPDR RSRHTRSRTRSPD+HR+RSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRLRSRHTRSRTRSPDQHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120

Query: 121 VDDEKERQKAVSDFVDGIAKEQHKQKKNKD--GGGEVVEEAVADEDEIEMMKKLGIPVGF 180
           VDD+KERQK VSDFVDGIAKEQHKQKKNKD  GG EVVEEAVADEDEIEMMKKLGIPVGF
Sbjct: 121 VDDDKERQKVVSDFVDGIAKEQHKQKKNKDRVGGEEVVEEAVADEDEIEMMKKLGIPVGF 180

Query: 181 DSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           DSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 DSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of Lcy03g018090 vs. NCBI nr
Match: KAG6587747.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021718.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 361.3 bits (926), Expect = 6.0e-96
Identity = 214/224 (95.54%), Postives = 216/224 (96.43%), Query Frame = 0


Query: 1   MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60
           MVDRERDRDR RDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60

Query: 61  SKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPDR RSRHTRSRTRS DRHR+RSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRLRSRHTRSRTRSLDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120

Query: 121 VDDEKERQKAVSDFVDGIAKEQHKQKKNKD--GGGEVVEEAVADEDEIEMMKKLGIPVGF 180
           VDD+KERQK VSDFVDGIAKEQHKQKKNKD  GG EVVEEAVADEDEIEMMKKLGIPVGF
Sbjct: 121 VDDDKERQKVVSDFVDGIAKEQHKQKKNKDSVGGEEVVEEAVADEDEIEMMKKLGIPVGF 180

Query: 181 DSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           DSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 DSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of Lcy03g018090 vs. NCBI nr
Match: XP_022930164.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata] >XP_022930170.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata] >XP_022930179.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata])

HSP 1 Score: 354.0 bits (907), Expect = 9.5e-94
Identity = 212/224 (94.64%), Postives = 214/224 (95.54%), Query Frame = 0


Query: 1   MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60
           MVDRERDRDR RDRDKDRDRDRYKDRERDRDHRE  RDRDRERERRRDREDRDRERERGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRE--RDRDRERERRRDREDRDRERERGR 60

Query: 61  SKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPDR RSRHTRSRTRS DRHR+RSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRLRSRHTRSRTRSLDRHRTRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120

Query: 121 VDDEKERQKAVSDFVDGIAKEQHKQKKNKD--GGGEVVEEAVADEDEIEMMKKLGIPVGF 180
           VDD+KERQK VSDFVDGIAKEQHKQKKNKD  GG EVVEEAVADEDEIEMMKKLGIPVGF
Sbjct: 121 VDDDKERQKVVSDFVDGIAKEQHKQKKNKDSVGGEEVVEEAVADEDEIEMMKKLGIPVGF 180

Query: 181 DSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           DSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 DSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 222

[Close]

BLAST of Lcy03g018090 vs. NCBI nr
Match: XP_022135124.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Momordica charantia])

HSP 1 Score: 345.1 bits (884), Expect = 4.4e-91
Identity = 206/228 (90.35%), Postives = 211/228 (92.54%), Query Frame = 0


Query: 1   MVDRERDRDRTRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGR 60
           MVDRERDRDR RDRDKDRDRDRYKDRERDRDHRERD      RERRRDR+DRDRERERGR
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD------RERRRDRDDRDRERERGR 60

Query: 61  SKRSHTPDRPRSRHTRSRTRSPDRHRSRSLSRSPEDRSLRRRHRSPSPEHARKRHRRDLT 120
           SKRSHTPDR RSRHTRSRTRSPDRHRSRSLSR+PEDRS RRRHR+PSPEHARKRHRRDLT
Sbjct: 61  SKRSHTPDRTRSRHTRSRTRSPDRHRSRSLSRTPEDRSGRRRHRTPSPEHARKRHRRDLT 120

Query: 121 VDDEKERQKAVSDFVDGIAKEQHKQKKNKD------GGGEVVEEAVADEDEIEMMKKLGI 180
            DDEKERQKAVSDFVDGIAKEQHKQKKNKD      GGGEVVEEA+ADEDEIEMMKKLGI
Sbjct: 121 ADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGGGGGGEVVEEAMADEDEIEMMKKLGI 180

Query: 181 PVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           PVGFDSTKGKPV GADVSGVRVVTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 PVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 222

[Close]

BLAST of Lcy03g018090 vs. TAIR 10
Match: AT5G57370.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 155.2 bits (391), Expect = 6.0e-38
Identity = 132/230 (57.39%), Postives = 156/230 (67.83%), Query Frame = 0


Query: 5   ERDRDRTRDRDKDRDRDRYKDRERDRDHRERDRDRDRERERRRDREDRDRERERGRSKRS 64
           ERDR R R+RDKDR+ DR  DR R RD R+RDRDRDRER+R RDR+       R +  RS
Sbjct: 3   ERDR-RERERDKDREPDR--DRRRGRDDRDRDRDRDRERDRERDRD----RGLRNKKSRS 62

Query: 65  HTPDRPRSRHTRSR-TRSPDRHRSRSLSRSPE---DRSLRRRHRSPSPEHARKRHRRDLT 124
            TPD     H R+R  RSP+R+RSRS S   +   DR    R RSPSP+   ++  R  +
Sbjct: 63  RTPD----HHARARHVRSPERYRSRSRSIDRDRDRDRQRHHRRRSPSPDAPSRKRPRQGS 122

Query: 125 VDDEKE--RQKAVSDFVD----GIAKEQHKQKKN--KDGGGEVVEEAVADEDEIEMMKKL 184
           VDDEKE  R++ V+D VD     I K++ KQ  +   +GGGE  +E   D +EIEMMK L
Sbjct: 123 VDDEKERNRKRVVTDSVDENASTITKKKDKQPSDAADNGGGE--DEEGMDVNEIEMMKML 182

Query: 185 GIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 223
           GIP GFDSTKGKPV GADVSG+R VTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 183 GIPTGFDSTKGKPVAGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 219

The following BLAST results are available for this feature:

BLAST of Lcy03g018090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K194	1.0e-10	43.72	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090...	[more]
Q8WVK2	1.4e-10	44.26	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 ...	[more]
Q6GLZ8	6.8e-10	42.63	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=835...	[more]
Q6DDA4	5.7e-09	42.16	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus tropicalis OX...	[more]
Q6DH74	5.9e-06	41.58	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Danio rerio OX=7955 G...	[more]

BLAST of Lcy03g018090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L1Y6	1.3e-96	95.09	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita maxima...	[more]
A0A6J1EW85	4.6e-94	94.64	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita moscha...	[more]
A0A6J1C0K3	2.1e-91	90.35	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Momordica charantia O...	[more]
A0A5D3CK71	2.0e-89	88.46	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. mak...	[more]
A0A1S3BW27	2.0e-89	88.46	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 ...	[more]

BLAST of Lcy03g018090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023530476.1	4.1e-97	95.98	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo sub...	[more]
XP_023007065.1	2.7e-96	95.09	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima] ...	[more]
KAG6587747.1	6.0e-96	95.54	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argy...	[more]
XP_022930164.1	9.5e-94	94.64	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita moschata...	[more]
XP_022135124.1	4.4e-91	90.35	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Momordica charantia]	[more]

BLAST of Lcy03g018090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57370.1	6.0e-38	57.39	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013957	U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein	PFAM	PF08648	SNRNP27	coord: 163..218 e-value: 9.4E-25 score: 86.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..155
None	No IPR available	PANTHER	PTHR31077:SF4	BNAA10G11430D PROTEIN	coord: 27..222
None	No IPR available	PANTHER	PTHR31077	U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN	coord: 27..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g018090.1	Lcy03g018090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005634	nucleus