Lcy03g017310 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g017310
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDUF4228 domain protein
LocationChr03: 51097727 .. 51098484 (-)
RNA-Seq ExpressionLcy03g017310
SyntenyLcy03g017310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTATTTTTCTCCTCTCTCTCTCTTTCTGTCGTATTCATGCATAAATTCAAGCACAGCGAGAGAGATTTCATTATCGGCGCAGCTCCAACTTTCCCCACTTTTGCCAAACACGCGCTCTCCATGGGGAACTCAGCGTCCTGTGCCCCTTCAATGGCCTCCAATGCCGCGGCGAAGGTCTTATCCTTAGAAGGAAACTTGCAGAGTTTCACGAAGCCAGTGAAGGCCGCGGAATTGATGATCGAGCATTCCGGAAAATTCCTCTGCGATTCCGGAGATCTCAAGGTCGGCCATCGGATTCAAGGCCTTCTGCCGGAGGAAGATCTCGAGTGCCGCCGATTGTACTTTCTACTTCCGATGGATCTTCTTTACTCTGTTTTGACGATCGAAGAAATGAGCTCTCTCACTTACATCGCGACAGAGGCTCTGAAACATGGAAATTCGAGTGGATTCGGAAAGATCTTCCCTGTTTTGATCAGTGAACTCTGTATTTTTCCGTCGGATGTGAATCGAGTGAAATCGACGGACGGCGATCGAGAGAATCGAAGTTCGAAGCCGGTGCAGAGATTGATGTCGAAACAGAGATCGTGGAAGCCGGCGCTCGAAACCATTGCTGAAACTTCGTGCACATAGAAACAGAGACGATCGCAATCGGAAATATGTGTGAGATTAATACATTACGAATAATTGGTAGCATTTTTGCTTCGTGAATCGGTAGATATAATAATAATTTTATTTTATTTTATTTTATTTTATTTT

mRNA sequence

CTTTATTTTTCTCCTCTCTCTCTCTTTCTGTCGTATTCATGCATAAATTCAAGCACAGCGAGAGAGATTTCATTATCGGCGCAGCTCCAACTTTCCCCACTTTTGCCAAACACGCGCTCTCCATGGGGAACTCAGCGTCCTGTGCCCCTTCAATGGCCTCCAATGCCGCGGCGAAGGTCTTATCCTTAGAAGGAAACTTGCAGAGTTTCACGAAGCCAGTGAAGGCCGCGGAATTGATGATCGAGCATTCCGGAAAATTCCTCTGCGATTCCGGAGATCTCAAGGTCGGCCATCGGATTCAAGGCCTTCTGCCGGAGGAAGATCTCGAGTGCCGCCGATTGTACTTTCTACTTCCGATGGATCTTCTTTACTCTGTTTTGACGATCGAAGAAATGAGCTCTCTCACTTACATCGCGACAGAGGCTCTGAAACATGGAAATTCGAGTGGATTCGGAAAGATCTTCCCTGTTTTGATCAGTGAACTCTGTATTTTTCCGTCGGATGTGAATCGAGTGAAATCGACGGACGGCGATCGAGAGAATCGAAGTTCGAAGCCGGTGCAGAGATTGATGTCGAAACAGAGATCGTGGAAGCCGGCGCTCGAAACCATTGCTGAAACTTCGTGCACATAGAAACAGAGACGATCGCAATCGGAAATATGTGTGAGATTAATACATTACGAATAATTGGTAGCATTTTTGCTTCGTGAATCGGTAGATATAATAATAATTTTATTTTATTTTATTTTATTTTATTTT

Coding sequence (CDS)

ATGCATAAATTCAAGCACAGCGAGAGAGATTTCATTATCGGCGCAGCTCCAACTTTCCCCACTTTTGCCAAACACGCGCTCTCCATGGGGAACTCAGCGTCCTGTGCCCCTTCAATGGCCTCCAATGCCGCGGCGAAGGTCTTATCCTTAGAAGGAAACTTGCAGAGTTTCACGAAGCCAGTGAAGGCCGCGGAATTGATGATCGAGCATTCCGGAAAATTCCTCTGCGATTCCGGAGATCTCAAGGTCGGCCATCGGATTCAAGGCCTTCTGCCGGAGGAAGATCTCGAGTGCCGCCGATTGTACTTTCTACTTCCGATGGATCTTCTTTACTCTGTTTTGACGATCGAAGAAATGAGCTCTCTCACTTACATCGCGACAGAGGCTCTGAAACATGGAAATTCGAGTGGATTCGGAAAGATCTTCCCTGTTTTGATCAGTGAACTCTGTATTTTTCCGTCGGATGTGAATCGAGTGAAATCGACGGACGGCGATCGAGAGAATCGAAGTTCGAAGCCGGTGCAGAGATTGATGTCGAAACAGAGATCGTGGAAGCCGGCGCTCGAAACCATTGCTGAAACTTCGTGCACATAG

Protein sequence

MHKFKHSERDFIIGAAPTFPTFAKHALSMGNSASCAPSMASNAAAKVLSLEGNLQSFTKPVKAAELMIEHSGKFLCDSGDLKVGHRIQGLLPEEDLECRRLYFLLPMDLLYSVLTIEEMSSLTYIATEALKHGNSSGFGKIFPVLISELCIFPSDVNRVKSTDGDRENRSSKPVQRLMSKQRSWKPALETIAETSCT
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C0W61.8e-7885.08uncharacterized protein LOC111007254 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1E2A07.7e-7788.69uncharacterized protein LOC111429917 OS=Cucurbita moschata OX=3662 GN=LOC1114299... [more]
A0A6J1HLR92.3e-7690.00uncharacterized protein LOC111465363 OS=Cucurbita maxima OX=3661 GN=LOC111465363... [more]
A0A6J1JH132.9e-7688.10uncharacterized protein LOC111485040 OS=Cucurbita maxima OX=3661 GN=LOC111485040... [more]
A0A6J1F5K36.1e-7488.24uncharacterized protein LOC111441040 OS=Cucurbita moschata OX=3662 GN=LOC1114410... [more]
Match NameE-valueIdentityDescription
XP_022135244.13.8e-7885.08uncharacterized protein LOC111007254 [Momordica charantia][more]
XP_022921761.11.6e-7688.69uncharacterized protein LOC111429917 [Cucurbita moschata][more]
XP_022965466.14.7e-7690.00uncharacterized protein LOC111465363 [Cucurbita maxima][more]
XP_022987495.16.1e-7688.10uncharacterized protein LOC111485040 [Cucurbita maxima][more]
KAG7023330.17.9e-7687.50hypothetical protein SDJN02_14355, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
AT1G18290.14.4e-2438.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT4G37240.11.4e-0928.36unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT5G66580.11.8e-0931.58unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT3G50800.12.6e-0832.26unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT5G17350.12.6e-0829.10unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 29..193
e-value: 1.1E-30
score: 107.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..173
NoneNo IPR availablePANTHERPTHR33052DUF4228 DOMAIN PROTEIN-RELATEDcoord: 29..194
NoneNo IPR availablePANTHERPTHR33052:SF19DUF4228 DOMAIN PROTEINcoord: 29..194

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g017310.1Lcy03g017310.1mRNA