Lcy03g015690 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g015690
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein Asterix-like
Location	Chr03: 49589630 .. 49590100 (-)
RNA-Seq Expression	Lcy03g015690
Synteny	Lcy03g015690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCCGACCCGAATCATAGACTCGACCCGATCCGCGTCGGTCTAAAAATCAGATTTACCAAAGAAATCACATCGAGCGGGTGGAGAGGAGAGGCAGAGTCGTCCAGACTTGAGAGCGAGTCAAGAGATGTCGACACAAGCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCATTTATTGCGCCGGCAGTGAACCCGCAAGATCTGCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTCGGGATCGCCGGCGTCATGTTCAGGGTATTTTCTGTTTCTTTTTTAGCACCGATACGGTAACTATGGCGATCTTAGTTTTTACTCATACGACACTCTCGGTTTTGGTTGAAATTGAGCAGTACAAGCTTAGTTCGTGGCTGGCCATCATATTTTGCGCCCAATCGCTTGCGAATATGAGGAACATTGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTGA

mRNA sequence

ATGGAACCCGACCCGAATCATAGACTCGACCCGATCCGCGTCGGTCTAAAAATCAGATTTACCAAAGAAATCACATCGAGCGGGTGGAGAGGAGAGGCAGAGTCGTCCAGACTTGAGAGCGAGTCAAGAGATGTCGACACAAGCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCATTTATTGCGCCGGCAGTGAACCCGCAAGATCTGCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTCGGGATCGCCGGCGTCATGTTCAGGGTATTTTCTGTTTCTTTTTTAGCACCGATACGGTAACTATGGCGATCTTAGTTTTTACTCATACGACACTCTCGGTTTTGGTTGAAATTGAGCAGTACAAGCTTAGTTCGTGGCTGGCCATCATATTTTGCGCCCAATCGCTTGCGAATATGAGGAACATTGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTGA

Coding sequence (CDS)

ATGGAACCCGACCCGAATCATAGACTCGACCCGATCCGCGTCGGTCTAAAAATCAGATTTACCAAAGAAATCACATCGAGCGGGTGGAGAGGAGAGGCAGAGTCGTCCAGACTTGAGAGCGAGTCAAGAGATGTCGACACAAGCGAACGATCCACGGCAGCCGTCGGCGGCGAAGCCATTTATTGCGCCGGCAGTGAACCCGCAAGATCTGCCCGTCGATTATTCCGGTTTCATCGCCGTAGTTTTCGGGATCGCCGGCGTCATGTTCAGGGTATTTTCTGTTTCTTTTTTAGCACCGATACGGTAACTATGGCGATCTTAGTTTTTACTCATACGACACTCTCGGTTTTGGTTGAAATTGAGCAGTACAAGCTTAGTTCGTGGCTGGCCATCATATTTTGCGCCCAATCGCTTGCGAATATGAGGAACATTGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTGA

Protein sequence

MEPDPNHRLDPIRVGLKIRFTKEITSSGWRGEAESSRLESESRDVDTSERSTAAVGGEAIYCAGSEPARSARRLFRFHRRSFRDRRRHVQGIFCFFFSTDTVTMAILVFTHTTLSVLVEIEQYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM

Homology

[Close]

BLAST of Lcy03g015690 vs. ExPASy Swiss-Prot
Match: Q9SD88 (Protein Asterix OS=Arabidopsis thaliana OX=3702 GN=At5g07960 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-10
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 109 FTHTTLSVLVEIEQYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           F    L V   + +YK+ SWLAIIFCAQSLANMRN+ENDLKQISMAMM
Sbjct: 40  FIAVILGVSGVMFRYKICSWLAIIFCAQSLANMRNLENDLKQISMAMM 87

[Close]

BLAST of Lcy03g015690 vs. ExPASy TrEMBL
Match: A0A6J1JL73 (protein Asterix-like OS=Cucurbita maxima OX=3661 GN=LOC111485597 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 QYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           +YKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM
Sbjct: 47  RYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 81

[Close]

BLAST of Lcy03g015690 vs. ExPASy TrEMBL
Match: A0A1R3FZF4 (UDP-glucuronosyl/UDP-glucosyltransferase OS=Corchorus capsularis OX=210143 GN=CCACVL1_29934 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 QYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           +YKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM
Sbjct: 53  RYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 87

[Close]

BLAST of Lcy03g015690 vs. ExPASy TrEMBL
Match: A0A0A0LSF0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013160 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 QYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           +YKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM
Sbjct: 47  RYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 81

[Close]

BLAST of Lcy03g015690 vs. ExPASy TrEMBL
Match: A0A6J1E5Z1 (protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111429753 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 QYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           +YKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM
Sbjct: 47  RYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 81

[Close]

BLAST of Lcy03g015690 vs. ExPASy TrEMBL
Match: A0A6J1AIA3 (protein Asterix OS=Herrania umbratica OX=108875 GN=LOC110418221 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 QYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           +YKLSSWLAIIFCAQSLANMRN+ENDLKQISMAMM
Sbjct: 52  RYKLSSWLAIIFCAQSLANMRNVENDLKQISMAMM 86

[Close]

BLAST of Lcy03g015690 vs. NCBI nr
Match: OMO51211.1 (UDP-glucuronosyl/UDP-glucosyltransferase [Corchorus capsularis])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 QYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           +YKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM
Sbjct: 53  RYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 87

[Close]

BLAST of Lcy03g015690 vs. NCBI nr
Match: XP_022921505.1 (protein Asterix-like [Cucurbita moschata] >XP_023515471.1 protein Asterix [Cucurbita pepo subsp. pepo] >KAG7023226.1 Protein Asterix, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 QYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           +YKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM
Sbjct: 47  RYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 81

[Close]

BLAST of Lcy03g015690 vs. NCBI nr
Match: XP_004138191.1 (protein Asterix [Cucumis sativus] >KGN63717.1 hypothetical protein Csa_014204 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 QYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           +YKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM
Sbjct: 47  RYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 81

[Close]

BLAST of Lcy03g015690 vs. NCBI nr
Match: XP_022988309.1 (protein Asterix-like [Cucurbita maxima])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 QYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           +YKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM
Sbjct: 47  RYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 81

[Close]

BLAST of Lcy03g015690 vs. NCBI nr
Match: KAG6589538.1 (UDP-glucose 6-dehydrogenase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-08
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 122 QYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           +YKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM
Sbjct: 47  RYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 81

[Close]

BLAST of Lcy03g015690 vs. TAIR 10
Match: AT5G07960.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 5.8e-11
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 109 FTHTTLSVLVEIEQYKLSSWLAIIFCAQSLANMRNIENDLKQISMAMM 157
           F    L V   + +YK+ SWLAIIFCAQSLANMRN+ENDLKQISMAMM
Sbjct: 40  FIAVILGVSGVMFRYKICSWLAIIFCAQSLANMRNLENDLKQISMAMM 87

The following BLAST results are available for this feature:

BLAST of Lcy03g015690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SD88	8.1e-10	70.83	Protein Asterix OS=Arabidopsis thaliana OX=3702 GN=At5g07960 PE=3 SV=1	[more]

BLAST of Lcy03g015690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JL73	1.2e-08	97.14	protein Asterix-like OS=Cucurbita maxima OX=3661 GN=LOC111485597 PE=4 SV=1	[more]
A0A1R3FZF4	1.2e-08	97.14	UDP-glucuronosyl/UDP-glucosyltransferase OS=Corchorus capsularis OX=210143 GN=CC...	[more]
A0A0A0LSF0	1.2e-08	97.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013160 PE=4 SV=1	[more]
A0A6J1E5Z1	1.2e-08	97.14	protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111429753 PE=4 SV=1	[more]
A0A6J1AIA3	1.6e-08	94.29	protein Asterix OS=Herrania umbratica OX=108875 GN=LOC110418221 PE=4 SV=1	[more]

BLAST of Lcy03g015690 vs. NCBI nr


Match Name	E-value	Identity	Description
OMO51211.1	2.5e-08	97.14	UDP-glucuronosyl/UDP-glucosyltransferase [Corchorus capsularis]	[more]
XP_022921505.1	2.5e-08	97.14	protein Asterix-like [Cucurbita moschata] >XP_023515471.1 protein Asterix [Cucur...	[more]
XP_004138191.1	2.5e-08	97.14	protein Asterix [Cucumis sativus] >KGN63717.1 hypothetical protein Csa_014204 [C...	[more]
XP_022988309.1	2.5e-08	97.14	protein Asterix-like [Cucurbita maxima]	[more]
KAG6589538.1	2.5e-08	97.14	UDP-glucose 6-dehydrogenase 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy03g015690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07960.1	5.8e-11	70.83	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005351	PAT complex subunit Asterix	PFAM	PF03669	UPF0139	coord: 106..156 e-value: 1.1E-9 score: 38.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g015690.1	Lcy03g015690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0045048	protein insertion into ER membrane
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0044183	protein folding chaperone
molecular_function	GO:0016740	transferase activity