Lcy03g014630 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g014630
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionBnaA09g12100D protein
LocationChr03: 48738407 .. 48739095 (+)
RNA-Seq ExpressionLcy03g014630
SyntenyLcy03g014630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACTTTAGAGAAGAGGATTATGAGGGCTGCTGAGAATCCTGTAGCTGTATCTCTTAGTAATCTGAAAGATATTGGGATTTATCAGTTTAGACGCAGTGCTAGTTATCTATGTGCTGCAGTAGTGCGCATGATCACTAAGGATCATGAAAATCTTTTAAGGGGTTGGGGCTATATTCAAAGGCAGTACCAAAAGTTTTATGAGGAAGAATGGGAATCAGCTTGGATCTTGATAGGGAATGTGTGAGTGCAGTAGGAGAGTTGTTGAAGAAAAGGATGATCCTGAAGAACACTATAGGTGTCTTTTTGCTGGCACATCAGGGCCTTGATGGACAGGATAAAGAACTCGGTAAGATGTTGTGTGAAATGCATATGTCATACACTGGGATGCATGCTTATAGCCTTTTGAAAAATTGTGCTACCATGTTGAAAACACCAGTGTACAATTTATTTGCATTGCTTTGTAGCCCTGCTACTAGAGGTACACTCTAGTGTGTAATGCATTTGTTGGAGACTTATGATATGCCTGAAACAGAGGAGGCTAAGAAGAAGCTTTCTTCTGCAACTACATGGAGATATGCTAGGATATTTGATGCAGAGGCGTTTGTTCATCTACAGACGAAGAACTGTAGTGTGTTGACTGGCATATTGGCATGCACAGGACAACAGCTAGGTGGATCAAACTAG

mRNA sequence

ATGGACACTTTAGAGAAGAGGATTATGAGGGCTGCTGAGAATCCTGTAGCTGTATCTCTTAGTAATCTGAAAGATATTGGGATTTATCAGTTTAGACGCAGTGCTAGTTATCTATGTGCTGCAGTAGTGCGCATGATCACTAAGGATCATGAAAATCTTTTAAGGGGTTGGGGCTATATTCAAAGGCAGTACCAAAAGTTTTATGAGGAAGAATGGGAATCAGCTTGGATCTTGATAGGGAATGTGGCCTTGATGGACAGGATAAAGAACTCGTGTGTAATGCATTTGTTGGAGACTTATGATATGCCTGAAACAGAGGAGGCTAAGAAGAAGCTTTCTTCTGCAACTACATGGAGATATGCTAGGATATTTGATGCAGAGGCGTTTGTTCATCTACAGACGAAGAACTGTAGTGTGTTGACTGGCATATTGGCATGCACAGGACAACAGCTAGGTGGATCAAACTAG

Coding sequence (CDS)

ATGGACACTTTAGAGAAGAGGATTATGAGGGCTGCTGAGAATCCTGTAGCTGTATCTCTTAGTAATCTGAAAGATATTGGGATTTATCAGTTTAGACGCAGTGCTAGTTATCTATGTGCTGCAGTAGTGCGCATGATCACTAAGGATCATGAAAATCTTTTAAGGGGTTGGGGCTATATTCAAAGGCAGTACCAAAAGTTTTATGAGGAAGAATGGGAATCAGCTTGGATCTTGATAGGGAATGTGGCCTTGATGGACAGGATAAAGAACTCGTGTGTAATGCATTTGTTGGAGACTTATGATATGCCTGAAACAGAGGAGGCTAAGAAGAAGCTTTCTTCTGCAACTACATGGAGATATGCTAGGATATTTGATGCAGAGGCGTTTGTTCATCTACAGACGAAGAACTGTAGTGTGTTGACTGGCATATTGGCATGCACAGGACAACAGCTAGGTGGATCAAACTAG

Protein sequence

MDTLEKRIMRAAENPVAVSLSNLKDIGIYQFRRSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKNSCVMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQTKNCSVLTGILACTGQQLGGSN
Homology
BLAST of Lcy03g014630 vs. ExPASy TrEMBL
Match: A0A484N758 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS38112 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 0

Query: 31  FRRSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN 90
           F R+A+Y+CAA +R+ITKD  +L R W  I R Y  FY E  E A+ L  N+  ++ I+N
Sbjct: 203 FERTAAYMCAATLRLITKDEGSLHRAWKSIMRNYSNFYHE--EPAFELTPNLDCLEAIRN 262

Query: 91  ------------SC---------------------------------------------- 150
                       +C                                              
Sbjct: 263 FLQARRHLKGTIACFLLGFLQLEGQDRRLCSTLFERDMAYTGMHAYTLLMSVTEMLQAPL 322

Query: 151 ------------------VMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQT 154
                             ++H++  Y++P+T+  +++   A TW+YARIFD+  F  +QT
Sbjct: 323 SEVIKVVTHPSLVDALRTIVHIVLKYELPQTDADRERAMGARTWKYARIFDSAQFAAIQT 382

BLAST of Lcy03g014630 vs. ExPASy TrEMBL
Match: A0A328DIF3 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_003739 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 0

Query: 31  FRRSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN 90
           F R+A+Y+CAA +R+ITKD  +L R W  I R Y  FY E  E A+ L  N+  ++ I+N
Sbjct: 211 FERTAAYMCAATLRLITKDEGSLHRAWKSIMRNYSNFYHE--EPAFELTPNLDCLEAIRN 270

Query: 91  ------------SC---------------------------------------------- 150
                       +C                                              
Sbjct: 271 FLQARRHLKGTIACFLLGFLQLEGQDRRLCSTLFERDMAYTGMHAYTLLMSVTEMLQAPL 330

Query: 151 ------------------VMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQT 154
                             ++H++  Y++P+T+  +++   A TW+YARIFD+  F  +QT
Sbjct: 331 SEVIKVVTHPSLVDALRTIVHIVLKYELPQTDADRERAMGARTWKYARIFDSAQFAAIQT 390

BLAST of Lcy03g014630 vs. ExPASy TrEMBL
Match: A0A565AY26 (Uncharacterized protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS3974 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.1e-09
Identity = 53/197 (26.90%), Postives = 79/197 (40.10%), Query Frame = 0

Query: 33  RSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWE-----------SAWILIGN 92
           R+AS+ CA+V+R+ITK+H  L++ W Y+   YQKFY+   E           S  I++ N
Sbjct: 111 RTASFYCASVLRLITKEHGALVKAWSYLPEHYQKFYQTPMEFHISLDHECLKSVRIVLQN 170

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 171 RPIIRDSVAPFLLAFQEVKGEKNRRICEMLFETHLRFTGLHAYTLFVSNASKLGVPYDVF 230

Query: 153 VALMDRIKN----SCVMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQTKNC 155
           +AL++R  +      +  +LE Y+ P  ++  KK  S  TW Y+RIFD+E F  LQTKNC
Sbjct: 231 MALLNRRDSKEGLETITKILENYESPSLDKDDKK--SKCTWVYSRIFDSEMFDSLQTKNC 290

BLAST of Lcy03g014630 vs. ExPASy TrEMBL
Match: A0A484K0F2 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS849 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.5e-08
Identity = 48/192 (25.00%), Postives = 75/192 (39.06%), Query Frame = 0

Query: 38  LCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN------- 97
           +CAA +R+ITKD  +L R W  I R Y  FY E  E A+ L  N+  ++ I+N       
Sbjct: 1   MCAATLRLITKDEGSLHRAWKSIMRNYINFYHE--EPAFELTPNLDCLEAIRNFLQARRH 60

Query: 98  -----SC----------------------------------------------------- 154
                +C                                                     
Sbjct: 61  LKGTIACFLLGFLQLEGQDRRLCSALFERDMAYTGMHAYTLLMSVTEMLQAPLSEVIKVV 120

BLAST of Lcy03g014630 vs. ExPASy TrEMBL
Match: M4EG30 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 47/199 (23.62%), Postives = 73/199 (36.68%), Query Frame = 0

Query: 33  RSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWIL-------------- 92
           R+A + CAAV+R+ TK+H+ L++ W Y+   YQ FY+   E +  L              
Sbjct: 161 RTACFYCAAVLRLATKEHDALVKAWSYLPEHYQSFYKAPLEFSLSLDHECLKCLRRLLQK 220

Query: 93  -------IGNVALMDRIKNSC--------------------------------------- 152
                  +    L  +  N C                                       
Sbjct: 221 STTIRNSVAPFLLAFQELNGCSKNRAICKTLFESHLGFTGLHAYTLFISNASKLAVPHHV 280

Query: 153 ----------------VMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQTKN 156
                           +M +L+ Y+ P  +E  +K  S  TW Y+RIFD++ F  LQTK 
Sbjct: 281 FRHVLRHHAAEEGLETIMEILKRYEDPSLDEGDRK--SKCTWIYSRIFDSDMFGSLQTKR 340

BLAST of Lcy03g014630 vs. NCBI nr
Match: VFQ96336.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 0

Query: 31  FRRSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN 90
           F R+A+Y+CAA +R+ITKD  +L R W  I R Y  FY E  E A+ L  N+  ++ I+N
Sbjct: 203 FERTAAYMCAATLRLITKDEGSLHRAWKSIMRNYSNFYHE--EPAFELTPNLDCLEAIRN 262

Query: 91  ------------SC---------------------------------------------- 150
                       +C                                              
Sbjct: 263 FLQARRHLKGTIACFLLGFLQLEGQDRRLCSTLFERDMAYTGMHAYTLLMSVTEMLQAPL 322

Query: 151 ------------------VMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQT 154
                             ++H++  Y++P+T+  +++   A TW+YARIFD+  F  +QT
Sbjct: 323 SEVIKVVTHPSLVDALRTIVHIVLKYELPQTDADRERAMGARTWKYARIFDSAQFAAIQT 382

BLAST of Lcy03g014630 vs. NCBI nr
Match: RAL44980.1 (hypothetical protein DM860_003739 [Cuscuta australis])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 0

Query: 31  FRRSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN 90
           F R+A+Y+CAA +R+ITKD  +L R W  I R Y  FY E  E A+ L  N+  ++ I+N
Sbjct: 211 FERTAAYMCAATLRLITKDEGSLHRAWKSIMRNYSNFYHE--EPAFELTPNLDCLEAIRN 270

Query: 91  ------------SC---------------------------------------------- 150
                       +C                                              
Sbjct: 271 FLQARRHLKGTIACFLLGFLQLEGQDRRLCSTLFERDMAYTGMHAYTLLMSVTEMLQAPL 330

Query: 151 ------------------VMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQT 154
                             ++H++  Y++P+T+  +++   A TW+YARIFD+  F  +QT
Sbjct: 331 SEVIKVVTHPSLVDALRTIVHIVLKYELPQTDADRERAMGARTWKYARIFDSAQFAAIQT 390

BLAST of Lcy03g014630 vs. NCBI nr
Match: VVA93529.1 (unnamed protein product [Arabis nemorensis])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 53/197 (26.90%), Postives = 79/197 (40.10%), Query Frame = 0

Query: 33  RSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWE-----------SAWILIGN 92
           R+AS+ CA+V+R+ITK+H  L++ W Y+   YQKFY+   E           S  I++ N
Sbjct: 111 RTASFYCASVLRLITKEHGALVKAWSYLPEHYQKFYQTPMEFHISLDHECLKSVRIVLQN 170

Query: 93  ------------------------------------------------------------ 152
                                                                       
Sbjct: 171 RPIIRDSVAPFLLAFQEVKGEKNRRICEMLFETHLRFTGLHAYTLFVSNASKLGVPYDVF 230

Query: 153 VALMDRIKN----SCVMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQTKNC 155
           +AL++R  +      +  +LE Y+ P  ++  KK  S  TW Y+RIFD+E F  LQTKNC
Sbjct: 231 MALLNRRDSKEGLETITKILENYESPSLDKDDKK--SKCTWVYSRIFDSEMFDSLQTKNC 290

BLAST of Lcy03g014630 vs. NCBI nr
Match: VFQ59073.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-08
Identity = 48/192 (25.00%), Postives = 75/192 (39.06%), Query Frame = 0

Query: 38  LCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN------- 97
           +CAA +R+ITKD  +L R W  I R Y  FY E  E A+ L  N+  ++ I+N       
Sbjct: 1   MCAATLRLITKDEGSLHRAWKSIMRNYINFYHE--EPAFELTPNLDCLEAIRNFLQARRH 60

Query: 98  -----SC----------------------------------------------------- 154
                +C                                                     
Sbjct: 61  LKGTIACFLLGFLQLEGQDRRLCSALFERDMAYTGMHAYTLLMSVTEMLQAPLSEVIKVV 120

BLAST of Lcy03g014630 vs. NCBI nr
Match: CAG7861121.1 (unnamed protein product [Brassica rapa] >VDC59516.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-06
Identity = 48/199 (24.12%), Postives = 72/199 (36.18%), Query Frame = 0

Query: 33  RSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWE------------------- 92
           R+A + CAAV+R+ TK+H+ L++ W Y+   YQ FY+   E                   
Sbjct: 161 RTACFYCAAVLRLATKEHDALVKAWSYLPEHYQSFYKTPLEFSLSLDHECLKCLRRLLQK 220

Query: 93  -------SAWILIGNVALMDRIKN------------------------------------ 152
                   A  L+    L    KN                                    
Sbjct: 221 STTIRNSVAPFLLAFQELSGSSKNRAICKTLFESHLGFTGLHAYTLFISNATKLAVPHHV 280

Query: 153 --------------SCVMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQTKN 156
                           +M +L+ Y+ P  +E  +K  S  TW Y+RIFD++ F  LQTK 
Sbjct: 281 FRHVLRHHAAEEGLETIMEILKRYEDPSLDEGDRK--SKCTWIYSRIFDSDMFGSLQTKR 340

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A484N7586.2e-1327.14Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS38112 PE=4 ... [more]
A0A328DIF36.2e-1327.14Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_003739 PE=4 SV=1[more]
A0A565AY267.1e-0926.90Uncharacterized protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS3974 PE=4 SV=... [more]
A0A484K0F23.5e-0825.00Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS849 PE=4 SV... [more]
M4EG301.9e-0623.62Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
VFQ96336.11.3e-1227.14unnamed protein product [Cuscuta campestris][more]
RAL44980.11.3e-1227.14hypothetical protein DM860_003739 [Cuscuta australis][more]
VVA93529.11.5e-0826.90unnamed protein product [Arabis nemorensis][more]
VFQ59073.17.3e-0825.00unnamed protein product [Cuscuta campestris][more]
CAG7861121.16.8e-0624.12unnamed protein product [Brassica rapa] >VDC59516.1 unnamed protein product [Bra... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004902Rhabdovirus nucleoproteinPFAMPF03216Rhabdo_ncap_2coord: 22..77
e-value: 7.8E-7
score: 28.8
coord: 94..146
e-value: 3.8E-9
score: 36.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g014630.1Lcy03g014630.1mRNA