Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACTTTAGAGAAGAGGATTATGAGGGCTGCTGAGAATCCTGTAGCTGTATCTCTTAGTAATCTGAAAGATATTGGGATTTATCAGTTTAGACGCAGTGCTAGTTATCTATGTGCTGCAGTAGTGCGCATGATCACTAAGGATCATGAAAATCTTTTAAGGGGTTGGGGCTATATTCAAAGGCAGTACCAAAAGTTTTATGAGGAAGAATGGGAATCAGCTTGGATCTTGATAGGGAATGTGTGAGTGCAGTAGGAGAGTTGTTGAAGAAAAGGATGATCCTGAAGAACACTATAGGTGTCTTTTTGCTGGCACATCAGGGCCTTGATGGACAGGATAAAGAACTCGGTAAGATGTTGTGTGAAATGCATATGTCATACACTGGGATGCATGCTTATAGCCTTTTGAAAAATTGTGCTACCATGTTGAAAACACCAGTGTACAATTTATTTGCATTGCTTTGTAGCCCTGCTACTAGAGGTACACTCTAGTGTGTAATGCATTTGTTGGAGACTTATGATATGCCTGAAACAGAGGAGGCTAAGAAGAAGCTTTCTTCTGCAACTACATGGAGATATGCTAGGATATTTGATGCAGAGGCGTTTGTTCATCTACAGACGAAGAACTGTAGTGTGTTGACTGGCATATTGGCATGCACAGGACAACAGCTAGGTGGATCAAACTAG
mRNA sequence
ATGGACACTTTAGAGAAGAGGATTATGAGGGCTGCTGAGAATCCTGTAGCTGTATCTCTTAGTAATCTGAAAGATATTGGGATTTATCAGTTTAGACGCAGTGCTAGTTATCTATGTGCTGCAGTAGTGCGCATGATCACTAAGGATCATGAAAATCTTTTAAGGGGTTGGGGCTATATTCAAAGGCAGTACCAAAAGTTTTATGAGGAAGAATGGGAATCAGCTTGGATCTTGATAGGGAATGTGGCCTTGATGGACAGGATAAAGAACTCGTGTGTAATGCATTTGTTGGAGACTTATGATATGCCTGAAACAGAGGAGGCTAAGAAGAAGCTTTCTTCTGCAACTACATGGAGATATGCTAGGATATTTGATGCAGAGGCGTTTGTTCATCTACAGACGAAGAACTGTAGTGTGTTGACTGGCATATTGGCATGCACAGGACAACAGCTAGGTGGATCAAACTAG
Coding sequence (CDS)
ATGGACACTTTAGAGAAGAGGATTATGAGGGCTGCTGAGAATCCTGTAGCTGTATCTCTTAGTAATCTGAAAGATATTGGGATTTATCAGTTTAGACGCAGTGCTAGTTATCTATGTGCTGCAGTAGTGCGCATGATCACTAAGGATCATGAAAATCTTTTAAGGGGTTGGGGCTATATTCAAAGGCAGTACCAAAAGTTTTATGAGGAAGAATGGGAATCAGCTTGGATCTTGATAGGGAATGTGGCCTTGATGGACAGGATAAAGAACTCGTGTGTAATGCATTTGTTGGAGACTTATGATATGCCTGAAACAGAGGAGGCTAAGAAGAAGCTTTCTTCTGCAACTACATGGAGATATGCTAGGATATTTGATGCAGAGGCGTTTGTTCATCTACAGACGAAGAACTGTAGTGTGTTGACTGGCATATTGGCATGCACAGGACAACAGCTAGGTGGATCAAACTAG
Protein sequence
MDTLEKRIMRAAENPVAVSLSNLKDIGIYQFRRSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKNSCVMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQTKNCSVLTGILACTGQQLGGSN
Homology
BLAST of Lcy03g014630 vs. ExPASy TrEMBL
Match:
A0A484N758 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS38112 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 0
Query: 31 FRRSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN 90
F R+A+Y+CAA +R+ITKD +L R W I R Y FY E E A+ L N+ ++ I+N
Sbjct: 203 FERTAAYMCAATLRLITKDEGSLHRAWKSIMRNYSNFYHE--EPAFELTPNLDCLEAIRN 262
Query: 91 ------------SC---------------------------------------------- 150
+C
Sbjct: 263 FLQARRHLKGTIACFLLGFLQLEGQDRRLCSTLFERDMAYTGMHAYTLLMSVTEMLQAPL 322
Query: 151 ------------------VMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQT 154
++H++ Y++P+T+ +++ A TW+YARIFD+ F +QT
Sbjct: 323 SEVIKVVTHPSLVDALRTIVHIVLKYELPQTDADRERAMGARTWKYARIFDSAQFAAIQT 382
BLAST of Lcy03g014630 vs. ExPASy TrEMBL
Match:
A0A328DIF3 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_003739 PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 6.2e-13
Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 0
Query: 31 FRRSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN 90
F R+A+Y+CAA +R+ITKD +L R W I R Y FY E E A+ L N+ ++ I+N
Sbjct: 211 FERTAAYMCAATLRLITKDEGSLHRAWKSIMRNYSNFYHE--EPAFELTPNLDCLEAIRN 270
Query: 91 ------------SC---------------------------------------------- 150
+C
Sbjct: 271 FLQARRHLKGTIACFLLGFLQLEGQDRRLCSTLFERDMAYTGMHAYTLLMSVTEMLQAPL 330
Query: 151 ------------------VMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQT 154
++H++ Y++P+T+ +++ A TW+YARIFD+ F +QT
Sbjct: 331 SEVIKVVTHPSLVDALRTIVHIVLKYELPQTDADRERAMGARTWKYARIFDSAQFAAIQT 390
BLAST of Lcy03g014630 vs. ExPASy TrEMBL
Match:
A0A565AY26 (Uncharacterized protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS3974 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 7.1e-09
Identity = 53/197 (26.90%), Postives = 79/197 (40.10%), Query Frame = 0
Query: 33 RSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWE-----------SAWILIGN 92
R+AS+ CA+V+R+ITK+H L++ W Y+ YQKFY+ E S I++ N
Sbjct: 111 RTASFYCASVLRLITKEHGALVKAWSYLPEHYQKFYQTPMEFHISLDHECLKSVRIVLQN 170
Query: 93 ------------------------------------------------------------ 152
Sbjct: 171 RPIIRDSVAPFLLAFQEVKGEKNRRICEMLFETHLRFTGLHAYTLFVSNASKLGVPYDVF 230
Query: 153 VALMDRIKN----SCVMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQTKNC 155
+AL++R + + +LE Y+ P ++ KK S TW Y+RIFD+E F LQTKNC
Sbjct: 231 MALLNRRDSKEGLETITKILENYESPSLDKDDKK--SKCTWVYSRIFDSEMFDSLQTKNC 290
BLAST of Lcy03g014630 vs. ExPASy TrEMBL
Match:
A0A484K0F2 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS849 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 3.5e-08
Identity = 48/192 (25.00%), Postives = 75/192 (39.06%), Query Frame = 0
Query: 38 LCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN------- 97
+CAA +R+ITKD +L R W I R Y FY E E A+ L N+ ++ I+N
Sbjct: 1 MCAATLRLITKDEGSLHRAWKSIMRNYINFYHE--EPAFELTPNLDCLEAIRNFLQARRH 60
Query: 98 -----SC----------------------------------------------------- 154
+C
Sbjct: 61 LKGTIACFLLGFLQLEGQDRRLCSALFERDMAYTGMHAYTLLMSVTEMLQAPLSEVIKVV 120
BLAST of Lcy03g014630 vs. ExPASy TrEMBL
Match:
M4EG30 (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)
HSP 1 Score: 62.4 bits (150), Expect = 1.9e-06
Identity = 47/199 (23.62%), Postives = 73/199 (36.68%), Query Frame = 0
Query: 33 RSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWIL-------------- 92
R+A + CAAV+R+ TK+H+ L++ W Y+ YQ FY+ E + L
Sbjct: 161 RTACFYCAAVLRLATKEHDALVKAWSYLPEHYQSFYKAPLEFSLSLDHECLKCLRRLLQK 220
Query: 93 -------IGNVALMDRIKNSC--------------------------------------- 152
+ L + N C
Sbjct: 221 STTIRNSVAPFLLAFQELNGCSKNRAICKTLFESHLGFTGLHAYTLFISNASKLAVPHHV 280
Query: 153 ----------------VMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQTKN 156
+M +L+ Y+ P +E +K S TW Y+RIFD++ F LQTK
Sbjct: 281 FRHVLRHHAAEEGLETIMEILKRYEDPSLDEGDRK--SKCTWIYSRIFDSDMFGSLQTKR 340
BLAST of Lcy03g014630 vs. NCBI nr
Match:
VFQ96336.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 0
Query: 31 FRRSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN 90
F R+A+Y+CAA +R+ITKD +L R W I R Y FY E E A+ L N+ ++ I+N
Sbjct: 203 FERTAAYMCAATLRLITKDEGSLHRAWKSIMRNYSNFYHE--EPAFELTPNLDCLEAIRN 262
Query: 91 ------------SC---------------------------------------------- 150
+C
Sbjct: 263 FLQARRHLKGTIACFLLGFLQLEGQDRRLCSTLFERDMAYTGMHAYTLLMSVTEMLQAPL 322
Query: 151 ------------------VMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQT 154
++H++ Y++P+T+ +++ A TW+YARIFD+ F +QT
Sbjct: 323 SEVIKVVTHPSLVDALRTIVHIVLKYELPQTDADRERAMGARTWKYARIFDSAQFAAIQT 382
BLAST of Lcy03g014630 vs. NCBI nr
Match:
RAL44980.1 (hypothetical protein DM860_003739 [Cuscuta australis])
HSP 1 Score: 84.0 bits (206), Expect = 1.3e-12
Identity = 54/199 (27.14%), Postives = 83/199 (41.71%), Query Frame = 0
Query: 31 FRRSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN 90
F R+A+Y+CAA +R+ITKD +L R W I R Y FY E E A+ L N+ ++ I+N
Sbjct: 211 FERTAAYMCAATLRLITKDEGSLHRAWKSIMRNYSNFYHE--EPAFELTPNLDCLEAIRN 270
Query: 91 ------------SC---------------------------------------------- 150
+C
Sbjct: 271 FLQARRHLKGTIACFLLGFLQLEGQDRRLCSTLFERDMAYTGMHAYTLLMSVTEMLQAPL 330
Query: 151 ------------------VMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQT 154
++H++ Y++P+T+ +++ A TW+YARIFD+ F +QT
Sbjct: 331 SEVIKVVTHPSLVDALRTIVHIVLKYELPQTDADRERAMGARTWKYARIFDSAQFAAIQT 390
BLAST of Lcy03g014630 vs. NCBI nr
Match:
VVA93529.1 (unnamed protein product [Arabis nemorensis])
HSP 1 Score: 70.5 bits (171), Expect = 1.5e-08
Identity = 53/197 (26.90%), Postives = 79/197 (40.10%), Query Frame = 0
Query: 33 RSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWE-----------SAWILIGN 92
R+AS+ CA+V+R+ITK+H L++ W Y+ YQKFY+ E S I++ N
Sbjct: 111 RTASFYCASVLRLITKEHGALVKAWSYLPEHYQKFYQTPMEFHISLDHECLKSVRIVLQN 170
Query: 93 ------------------------------------------------------------ 152
Sbjct: 171 RPIIRDSVAPFLLAFQEVKGEKNRRICEMLFETHLRFTGLHAYTLFVSNASKLGVPYDVF 230
Query: 153 VALMDRIKN----SCVMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQTKNC 155
+AL++R + + +LE Y+ P ++ KK S TW Y+RIFD+E F LQTKNC
Sbjct: 231 MALLNRRDSKEGLETITKILENYESPSLDKDDKK--SKCTWVYSRIFDSEMFDSLQTKNC 290
BLAST of Lcy03g014630 vs. NCBI nr
Match:
VFQ59073.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 68.2 bits (165), Expect = 7.3e-08
Identity = 48/192 (25.00%), Postives = 75/192 (39.06%), Query Frame = 0
Query: 38 LCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWESAWILIGNVALMDRIKN------- 97
+CAA +R+ITKD +L R W I R Y FY E E A+ L N+ ++ I+N
Sbjct: 1 MCAATLRLITKDEGSLHRAWKSIMRNYINFYHE--EPAFELTPNLDCLEAIRNFLQARRH 60
Query: 98 -----SC----------------------------------------------------- 154
+C
Sbjct: 61 LKGTIACFLLGFLQLEGQDRRLCSALFERDMAYTGMHAYTLLMSVTEMLQAPLSEVIKVV 120
BLAST of Lcy03g014630 vs. NCBI nr
Match:
CAG7861121.1 (unnamed protein product [Brassica rapa] >VDC59516.1 unnamed protein product [Brassica rapa])
HSP 1 Score: 61.6 bits (148), Expect = 6.8e-06
Identity = 48/199 (24.12%), Postives = 72/199 (36.18%), Query Frame = 0
Query: 33 RSASYLCAAVVRMITKDHENLLRGWGYIQRQYQKFYEEEWE------------------- 92
R+A + CAAV+R+ TK+H+ L++ W Y+ YQ FY+ E
Sbjct: 161 RTACFYCAAVLRLATKEHDALVKAWSYLPEHYQSFYKTPLEFSLSLDHECLKCLRRLLQK 220
Query: 93 -------SAWILIGNVALMDRIKN------------------------------------ 152
A L+ L KN
Sbjct: 221 STTIRNSVAPFLLAFQELSGSSKNRAICKTLFESHLGFTGLHAYTLFISNATKLAVPHHV 280
Query: 153 --------------SCVMHLLETYDMPETEEAKKKLSSATTWRYARIFDAEAFVHLQTKN 156
+M +L+ Y+ P +E +K S TW Y+RIFD++ F LQTK
Sbjct: 281 FRHVLRHHAAEEGLETIMEILKRYEDPSLDEGDRK--SKCTWIYSRIFDSDMFGSLQTKR 340
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A484N758 | 6.2e-13 | 27.14 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS38112 PE=4 ... | [more] |
A0A328DIF3 | 6.2e-13 | 27.14 | Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_003739 PE=4 SV=1 | [more] |
A0A565AY26 | 7.1e-09 | 26.90 | Uncharacterized protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS3974 PE=4 SV=... | [more] |
A0A484K0F2 | 3.5e-08 | 25.00 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS849 PE=4 SV... | [more] |
M4EG30 | 1.9e-06 | 23.62 | Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
VFQ96336.1 | 1.3e-12 | 27.14 | unnamed protein product [Cuscuta campestris] | [more] |
RAL44980.1 | 1.3e-12 | 27.14 | hypothetical protein DM860_003739 [Cuscuta australis] | [more] |
VVA93529.1 | 1.5e-08 | 26.90 | unnamed protein product [Arabis nemorensis] | [more] |
VFQ59073.1 | 7.3e-08 | 25.00 | unnamed protein product [Cuscuta campestris] | [more] |
CAG7861121.1 | 6.8e-06 | 24.12 | unnamed protein product [Brassica rapa] >VDC59516.1 unnamed protein product [Bra... | [more] |
Match Name | E-value | Identity | Description | |