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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCCGGAAAGAGCAAGAAAACAACGATCCGATTGGGGCAACCGAGAGAGGCGAATGTGTGGAAAGTGTTGTGGAGGAAGTTGAGAAGAAGGCAAAAAACGTATTCAAATTCAGGGAAGTTGATAATTGGTTACGATCAAAGCTTTCTCTTATTCGCAGAATTTCGATCAAGGCAACGCCGCCCAAGAACTCGATAATCTTTCACGCTCCTTCTCTGCTCGCTTCGCCCTCGCCGATGCTGCTTCCACACTCTTTCTTCACAAACAACTTCAATAA mRNA sequence ATGGCCGGAAAGAGCAAGAAAACAACGATCCGATTGGGGCAACCGAGAGAGGCGAATAATTTCGATCAAGGCAACGCCGCCCAAGAACTCGATAATCTTTCACGCTCCTTCTCTGCTCGCTTCGCCCTCGCCGATGCTGCTTCCACACTCTTTCTTCACAAACAACTTCAATAA Coding sequence (CDS) ATGGCCGGAAAGAGCAAGAAAACAACGATCCGATTGGGGCAACCGAGAGAGGCGAATAATTTCGATCAAGGCAACGCCGCCCAAGAACTCGATAATCTTTCACGCTCCTTCTCTGCTCGCTTCGCCCTCGCCGATGCTGCTTCCACACTCTTTCTTCACAAACAACTTCAATAA Protein sequence MAGKSKKTTIRLGQPREANNFDQGNAAQELDNLSRSFSARFALADAASTLFLHKQLQ
Homology
BLAST of Lcy03g012930 vs. ExPASy TrEMBL
Match: A0A0A0LWX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.1e-06 Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0
Query: 18 ANNFDQGNAAQELDNLSRSFSARFALADAASTLFLHKQ 56
+ NFDQG A +ELDNLSRSFSARFALAD AS FLHKQ
Sbjct: 67 SQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQ 104
BLAST of Lcy03g012930 vs. NCBI nr
Match: KAE8653121.1 (hypothetical protein Csa_019717, partial [Cucumis sativus]) HSP 1 Score: 60.8 bits (146), Expect = 4.3e-06 Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0
Query: 18 ANNFDQGNAAQELDNLSRSFSARFALADAASTLFLHKQ 56
+ NFDQG A +ELDNLSRSFSARFALAD AS FLHKQ
Sbjct: 72 SQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQ 109
BLAST of Lcy03g012930 vs. NCBI nr
Match: KAG6587950.1 (hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 57.0 bits (136), Expect = 6.2e-05 Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0
Query: 18 ANNFDQGNAAQELDNLSRSFSARFALADAASTLFLHKQLQ 58
++NFDQGNAA+E D L RSFSARFALADAAS FL QLQ
Sbjct: 207 SHNFDQGNAAEEPDILCRSFSARFALADAASAFFLDNQLQ 246
BLAST of Lcy03g012930 vs. NCBI nr
Match: KAG7021839.1 (hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04 Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0
Query: 18 ANNFDQGNAAQELDNLSRSFSARFALADAASTLFLHKQLQ 58
++NFDQGNAA++ D L RSFSARFALADAAS FL QLQ
Sbjct: 207 SHNFDQGNAAEDPDILCRSFSARFALADAASAFFLDNQLQ 246
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LWX3 | 2.1e-06 | 78.95 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8653121.1 | 4.3e-06 | 78.95 | hypothetical protein Csa_019717, partial [Cucumis sativus] | [more] |
| KAG6587950.1 | 6.2e-05 | 75.00 | hypothetical protein SDJN03_16515, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7021839.1 | 1.4e-04 | 72.50 | hypothetical protein SDJN02_15567, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..22 |
Relationships
The following mRNA feature(s) are a part of this gene:
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