Lcy03g010900 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g010900
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRibonuclease H-like superfamily protein
LocationChr03: 44893847 .. 44894632 (-)
RNA-Seq ExpressionLcy03g010900
SyntenyLcy03g010900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAACTTGAATCGGGAGGACCTGGAGCTCTCTATTCATTTGCTTTGGGGCATTTGGAAGAACAAAAACAGAGTCCTTCACAGCACTAGCTTGCCCAATCAAACTGTCAATGCAAGAAACTTAAACCCCATCATTACAGATTGTTTGGCCTTAAAGAGATCTAACCTGAATGCTCCGTCGGAGATCAATCTCAGTAGGGGGAAGAGCCAGCCGAGTCACGAGTATTGGAAGCCTCCGCCACTAGGATCGTGGAAATTAAATGTCGACGCCTCCTGGAACGCATCTCAGAACAGAGGAGGGGTGGGTTGGTCCATGCGTGACTCGTCAGGATCTCCAATCTTCTCGGGTTTCAGTCGAATTAACAAGAATTGGTCAGTCAAGTTTCTTGAGATGAGAGCGATCTTGGATGGGTTGAAAGTTTTACCGGCCATTAGAGCTTCGAGGTCGGATCTCTGCATCCCGCCGATCTCCGTTGAATCAGACGCTTTAAGCGTGATCAATCTCCTGAATGGAGAAGATGAGGACCTGACAGAAGCCTCGTTCTTGGCTGAAGATATCGCTGAGATGAGGAAGGTCGTGGAGGAGATCTCTTTTGAGTTTTGTCCGCGCGCCTGCAATGGTGATGCTCACCGGATGGCGCGAATTGCAGCTTTTGGGGTGTTCGGTCCCCCCCTGGATTTTTTTGGTACCTCTTCCAATTCGGAAGAGGTCTGGTTTTGTGGTATAGGGCTTGGGCCCGATTTCATTTACTCTTTGTATGAGACAACTGGTAGTGGTGGTTGA

mRNA sequence

ATGAGGAACTTGAATCGGGAGGACCTGGAGCTCTCTATTCATTTGCTTTGGGGCATTTGGAAGAACAAAAACAGAGTCCTTCACAGCACTAGCTTGCCCAATCAAACTGTCAATGCAAGAAACTTAAACCCCATCATTACAGATTGTTTGGCCTTAAAGAGATCTAACCTGAATGCTCCGTCGGAGATCAATCTCAGTAGGGGGAAGAGCCAGCCGAGTCACGAGTATTGGAAGCCTCCGCCACTAGGATCGTGGAAATTAAATGTCGACGCCTCCTGGAACGCATCTCAGAACAGAGGAGGGGTGGGTTGGTCCATGCGTGACTCGTCAGGATCTCCAATCTTCTCGGGTTTCAGTCGAATTAACAAGAATTGGTCAGTCAAGTTTCTTGAGATGAGAGCGATCTTGGATGGGTTGAAAGTTTTACCGGCCATTAGAGCTTCGAGGTCGGATCTCTGCATCCCGCCGATCTCCGTTGAATCAGACGCTTTAAGCGTGATCAATCTCCTGAATGGAGAAGATGAGGACCTGACAGAAGCCTCGTTCTTGGCTGAAGATATCGCTGAGATGAGGAAGGTCGTGGAGGAGATCTCTTTTGAGTTTTGTCCGCGCGCCTGCAATGGTGATGCTCACCGGATGGCGCGAATTGCAGCTTTTGGGGTGTTCGGTCCCCCCCTGGATTTTTTTGGTACCTCTTCCAATTCGGAAGAGGTCTGGTTTTGTGGTATAGGGCTTGGGCCCGATTTCATTTACTCTTTGTATGAGACAACTGGTAGTGGTGGTTGA

Coding sequence (CDS)

ATGAGGAACTTGAATCGGGAGGACCTGGAGCTCTCTATTCATTTGCTTTGGGGCATTTGGAAGAACAAAAACAGAGTCCTTCACAGCACTAGCTTGCCCAATCAAACTGTCAATGCAAGAAACTTAAACCCCATCATTACAGATTGTTTGGCCTTAAAGAGATCTAACCTGAATGCTCCGTCGGAGATCAATCTCAGTAGGGGGAAGAGCCAGCCGAGTCACGAGTATTGGAAGCCTCCGCCACTAGGATCGTGGAAATTAAATGTCGACGCCTCCTGGAACGCATCTCAGAACAGAGGAGGGGTGGGTTGGTCCATGCGTGACTCGTCAGGATCTCCAATCTTCTCGGGTTTCAGTCGAATTAACAAGAATTGGTCAGTCAAGTTTCTTGAGATGAGAGCGATCTTGGATGGGTTGAAAGTTTTACCGGCCATTAGAGCTTCGAGGTCGGATCTCTGCATCCCGCCGATCTCCGTTGAATCAGACGCTTTAAGCGTGATCAATCTCCTGAATGGAGAAGATGAGGACCTGACAGAAGCCTCGTTCTTGGCTGAAGATATCGCTGAGATGAGGAAGGTCGTGGAGGAGATCTCTTTTGAGTTTTGTCCGCGCGCCTGCAATGGTGATGCTCACCGGATGGCGCGAATTGCAGCTTTTGGGGTGTTCGGTCCCCCCCTGGATTTTTTTGGTACCTCTTCCAATTCGGAAGAGGTCTGGTTTTGTGGTATAGGGCTTGGGCCCGATTTCATTTACTCTTTGTATGAGACAACTGGTAGTGGTGGTTGA

Protein sequence

MRNLNREDLELSIHLLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAPSEINLSRGKSQPSHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSGFSRINKNWSVKFLEMRAILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDLTEASFLAEDIAEMRKVVEEISFEFCPRACNGDAHRMARIAAFGVFGPPLDFFGTSSNSEEVWFCGIGLGPDFIYSLYETTGSGG
Homology
BLAST of Lcy03g010900 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-20
Identity = 73/220 (33.18%), Postives = 112/220 (50.91%), Query Frame = 0

Query: 1   MRNLNREDLELSIHLLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAP 60
           M     E+   S+ + W IW+ +N+ +     P        ++  I +  A + +NL   
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINS-AGRNTNLKGK 60

Query: 61  S---EINLSRGKSQPSHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSG 120
           S   +++L R     +   WKPP   SWKLN +A+W A  N GG+GW +RD  G  I + 
Sbjct: 61  STNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKAS 120

Query: 121 FSRINKNWSVKFLEMRAILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDL 180
              I    ++ +LE+ AI +GL      RA R + C  PI +ESD+L  I+LL+ + +D 
Sbjct: 121 CRIIRAERNITYLEVMAICEGL------RAIRQEHC-RPIHLESDSLEAIHLLHRQCQDQ 180

Query: 181 TEASFLAEDIAEMRKVVEEISFEFCPRACNGDAHRMARIA 218
           TE  +L E+I +M K +E +S     R  N  AH +AR A
Sbjct: 181 TEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

BLAST of Lcy03g010900 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-20
Identity = 69/213 (32.39%), Postives = 113/213 (53.05%), Query Frame = 0

Query: 7   EDLELSIHLLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAPSEINLS 66
           EDL++ +   W IW ++N V+      + +   + L   +T+         +  SE +LS
Sbjct: 8   EDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTES--------SYQSETSLS 67

Query: 67  R-GKSQPSHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSGFSRINKNW 126
              K+  +   W+PPP+  W LN DASW+ S +RGG+GW +R   G  + +G   +    
Sbjct: 68  MLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACN 127

Query: 127 SVKFLEMRAILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDLTEASFLAE 186
           +VK LE  AIL+GL+ L  +   R      P+ +E+D+  V +LLN + EDLT+  ++ E
Sbjct: 128 NVKLLEASAILEGLRNLTNLGVLR------PLHIETDSAEVESLLNRKREDLTKTGWVVE 187

Query: 187 DIAEMRKVVEEISFEFCPRACNGDAHRMARIAA 219
           +I  +R   E ++F    R  NG AH +A+ A+
Sbjct: 188 EILNLRDSCEILAFAKVGRETNGCAHSLAQRAS 206

BLAST of Lcy03g010900 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-20
Identity = 75/228 (32.89%), Postives = 113/228 (49.56%), Query Frame = 0

Query: 1   MRNLNREDLELSIHLLWGIWKNKNRVL----HSTSLPNQTVNARNLNPIITDCLALKRSN 60
           M     E+   S+ + W IW+ +N+ +    HS +   Q V  R +         LK  +
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKS 60

Query: 61  LNAPSEINLSRGKSQPSHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFS 120
            N   +++L R     +   WKPP   SWKLN DA+W A  N GG+GW +RD  G  I +
Sbjct: 61  AN--KDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKA 120

Query: 121 GFSRINKNWSVKFLEMRAILDGLKVLPAIRASRSDLCIP-------PISVESDALSVINL 180
               I    ++ +LE+ AI +GL      RA R + C P       PI +ESD+L  I+L
Sbjct: 121 DCRIIRTERNITYLEVMAICEGL------RAIRQEHCRPIQQEHCRPIHLESDSLEAIHL 180

Query: 181 LNGEDEDLTEASFLAEDIAEMRKVVEEISFEFCPRACNGDAHRMARIA 218
           L+ + +D TE  +L E+I +M + ++ +S     R  N  AH +AR A
Sbjct: 181 LHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

BLAST of Lcy03g010900 vs. ExPASy TrEMBL
Match: B8AMK5 (RNase H domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_12637 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-14
Identity = 57/208 (27.40%), Postives = 100/208 (48.08%), Query Frame = 0

Query: 15  LLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAPS----EINLSRGKS 74
           LLW  W  +N ++H       + +   L         +++  ++       + N+    S
Sbjct: 333 LLWRAWFLRNDIIHGNGKAQTSASVMFLQHYAETLFMVRQKEVDLKGKGICQPNMHVRPS 392

Query: 75  QP-SHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSGFSRINKNWSVKF 134
            P S   WKPPP G  KLNVD +++A Q  G +G  +R+S G  I S +  + +    + 
Sbjct: 393 VPDSRTVWKPPPPGWVKLNVDGAFSAEQGIGAIGIIIRNSEGKAILSSWRFVRRCAEAEE 452

Query: 135 LEMRAILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDLTEASFLAEDIAE 194
           +E+ A  +GLK+        ++    P+ +ESD  +VI  L  + ED +  +FL  +  +
Sbjct: 453 VELLACCEGLKL-------AAEWVPLPVELESDCTTVITRLKSKGEDRSRWAFLWRETKD 512

Query: 195 MRKVVEEISFEFCPRACNGDAHRMARIA 218
           +  +V+E+    C R CN  AH +A++A
Sbjct: 513 VMSLVKEVRLSHCKRECNRVAHELAQLA 533

BLAST of Lcy03g010900 vs. ExPASy TrEMBL
Match: A0A803PZC5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.5e-14
Identity = 65/210 (30.95%), Postives = 104/210 (49.52%), Query Frame = 0

Query: 8   DLELSIHLLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAPSEINLSR 67
           ++E    +LW IW  +NRV+H       T  A   N  +++  + +         +  S 
Sbjct: 686 EMESIFCILWCIWSERNRVVHGQQAKPATHLASFANNYMSNYRSAQLKYRPQLHHVPPSS 745

Query: 68  GKSQPSHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSGFSRINKNWSV 127
             +QP H  W+PPP+G  K+NVDA+ ++S+NR G+G  +R+S+G  I +    I  N++ 
Sbjct: 746 APTQPVHIPWQPPPIGELKMNVDAAVDSSKNRIGLGAVIRNSTGQVIAALSMPIIGNFAS 805

Query: 128 KFLEMRAILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDLTEASFLAEDI 187
             +E +AI   L     + AS+ +L I    VE+DAL V N L G    +   + L  DI
Sbjct: 806 HEMEAKAIFHSL-----VWASQWELQIG--HVETDALMVTNALYGRTNSIAAFNDLIIDI 865

Query: 188 AEMRKVVEEISFEFCPRACNGDAHRMARIA 218
           + +   +  +S     R  N  AH +AR A
Sbjct: 866 SCLLSFLPGVSISHVKRTANMAAHTLARYA 888

BLAST of Lcy03g010900 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-20
Identity = 69/213 (32.39%), Postives = 113/213 (53.05%), Query Frame = 0

Query: 7   EDLELSIHLLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAPSEINLS 66
           EDL++ +   W IW ++N V+      + +   + L   +T+         +  SE +LS
Sbjct: 8   EDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTES--------SYQSETSLS 67

Query: 67  R-GKSQPSHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSGFSRINKNW 126
              K+  +   W+PPP+  W LN DASW+ S +RGG+GW +R   G  + +G   +    
Sbjct: 68  MLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACN 127

Query: 127 SVKFLEMRAILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDLTEASFLAE 186
           +VK LE  AIL+GL+ L  +   R      P+ +E+D+  V +LLN + EDLT+  ++ E
Sbjct: 128 NVKLLEASAILEGLRNLTNLGVLR------PLHIETDSAEVESLLNRKREDLTKTGWVVE 187

Query: 187 DIAEMRKVVEEISFEFCPRACNGDAHRMARIAA 219
           +I  +R   E ++F    R  NG AH +A+ A+
Sbjct: 188 EILNLRDSCEILAFAKVGRETNGCAHSLAQRAS 206

BLAST of Lcy03g010900 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-20
Identity = 73/220 (33.18%), Postives = 112/220 (50.91%), Query Frame = 0

Query: 1   MRNLNREDLELSIHLLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAP 60
           M     E+   S+ + W IW+ +N+ +     P        ++  I +  A + +NL   
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINS-AGRNTNLKGK 60

Query: 61  S---EINLSRGKSQPSHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSG 120
           S   +++L R     +   WKPP   SWKLN +A+W A  N GG+GW +RD  G  I + 
Sbjct: 61  STNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKAS 120

Query: 121 FSRINKNWSVKFLEMRAILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDL 180
              I    ++ +LE+ AI +GL      RA R + C  PI +ESD+L  I+LL+ + +D 
Sbjct: 121 CRIIRAERNITYLEVMAICEGL------RAIRQEHC-RPIHLESDSLEAIHLLHRQCQDQ 180

Query: 181 TEASFLAEDIAEMRKVVEEISFEFCPRACNGDAHRMARIA 218
           TE  +L E+I +M K +E +S     R  N  AH +AR A
Sbjct: 181 TEIIWLLEEIWQMMKDMEIVSMRHISREANKVAHGLARRA 212

BLAST of Lcy03g010900 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 108.6 bits (270), Expect = 8.2e-20
Identity = 75/228 (32.89%), Postives = 113/228 (49.56%), Query Frame = 0

Query: 1   MRNLNREDLELSIHLLWGIWKNKNRVL----HSTSLPNQTVNARNLNPIITDCLALKRSN 60
           M     E+   S+ + W IW+ +N+ +    HS +   Q V  R +         LK  +
Sbjct: 1   MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKS 60

Query: 61  LNAPSEINLSRGKSQPSHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFS 120
            N   +++L R     +   WKPP   SWKLN DA+W A  N GG+GW +RD  G  I +
Sbjct: 61  AN--KDLHLIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKA 120

Query: 121 GFSRINKNWSVKFLEMRAILDGLKVLPAIRASRSDLCIP-------PISVESDALSVINL 180
               I    ++ +LE+ AI +GL      RA R + C P       PI +ESD+L  I+L
Sbjct: 121 DCRIIRTERNITYLEVMAICEGL------RAIRQEHCRPIQQEHCRPIHLESDSLEAIHL 180

Query: 181 LNGEDEDLTEASFLAEDIAEMRKVVEEISFEFCPRACNGDAHRMARIA 218
           L+ + +D TE  +L E+I +M + ++ +S     R  N  AH +AR A
Sbjct: 181 LHRQCQDQTEIIWLLEEIWQMMEDMKIVSMRHISREANKVAHDLARRA 220

BLAST of Lcy03g010900 vs. NCBI nr
Match: XP_024042448.1 (uncharacterized protein LOC112099303 [Citrus clementina])

HSP 1 Score: 100.9 bits (250), Expect = 1.7e-17
Identity = 65/212 (30.66%), Postives = 106/212 (50.00%), Query Frame = 0

Query: 6   REDLELSIHLLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAPSEINL 65
           ++D+E  I + W IW ++N  +    + +   +A     ++    + +R N   P +   
Sbjct: 29  KKDMEQIIAVCWVIWHSRNCFVFEGKMEDPLYSATRAEAVVE---SYRRIN---PGKNIA 88

Query: 66  SRGKSQPSHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSGFSRINKNW 125
             G+ Q   + WKPPP G +K+NVDA+ N S+ RGG+G  +RDS G  + +   R     
Sbjct: 89  LAGQQQNGQQVWKPPPPGCFKVNVDAATNLSKQRGGIGAVVRDSRGDCVAAAAQRTTLKG 148

Query: 126 SVKFLEMRAILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDLTEASFLAE 185
           +V  +E  A+L G++V      +R   C P   +ESD+  V+ L+      L E S+  E
Sbjct: 149 NVADMEAEAVLLGIQV------ARKANC-PHFVIESDSKEVVELVLKRKRSLVEISWNIE 208

Query: 186 DIAEMRKVVEEISFEFCPRACNGDAHRMARIA 218
           +I E  K     S  + PR CN  AH +A++A
Sbjct: 209 EIQECLKGQNTASILYVPRRCNVRAHNLAKVA 227

BLAST of Lcy03g010900 vs. NCBI nr
Match: XP_024033599.1 (uncharacterized protein LOC112095720 [Citrus clementina])

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-16
Identity = 64/212 (30.19%), Postives = 105/212 (49.53%), Query Frame = 0

Query: 6   REDLELSIHLLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAPSEINL 65
           ++D+E  I + W IW  +N  +    + +   +A     ++    + +R N   P +   
Sbjct: 49  KKDMEQIIAVCWVIWHPRNCFVFEGKMEDPLYSATRAEAVVE---SYRRIN---PGKNIA 108

Query: 66  SRGKSQPSHEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSGFSRINKNW 125
             G+ Q   + WKPPP G +K+NVDA+ N S+ RGG+G  +RDS G  + +   R     
Sbjct: 109 LAGQQQNGQQVWKPPPPGCFKVNVDAATNLSKQRGGIGAVVRDSRGDYVAAAAQRTTLKG 168

Query: 126 SVKFLEMRAILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDLTEASFLAE 185
           +V  +E  A+L G++V      +R   C   + +ESD+  V+ L+      L E S+  E
Sbjct: 169 NVADMEAEAVLLGIQV------ARKANCAHFV-IESDSKEVVELVLKRKRSLVEISWNIE 228

Query: 186 DIAEMRKVVEEISFEFCPRACNGDAHRMARIA 218
           +I E  K     S  + PR CN  AH +A++A
Sbjct: 229 EIQECLKGQNTTSILYVPRRCNVRAHNLAKVA 247

BLAST of Lcy03g010900 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-14
Identity = 62/213 (29.11%), Postives = 96/213 (45.07%), Query Frame = 0

Query: 15  LLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAPSEINLSRGKSQPSH 74
           LLW +WK++N ++      +     R       +  + +R      S   + R  S    
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEE-WSTRRELEGKASGPQVERNLS---- 139

Query: 75  EYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSGFSRINKNWSVKFLEMRA 134
             WK PP    K N DA+W     R G+GW +R+ SG  ++ G   + +  +V   E+ A
Sbjct: 140 VQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEA 199

Query: 135 ILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDLTEASFLAEDIAEMRKVV 194
           +   +  +      R       I  ESDA +++NLLN +D   T    L EDI ++    
Sbjct: 200 LRWAVLTMSRFNYKR-------IIFESDAQALVNLLNSDDFWPTLQPAL-EDIQQLLHHF 259

Query: 195 EEISFEFCPRACNGDAHRMARIA-AFGVFGPPL 227
           EE+ FEF PR  N  A R+AR + +F  + P L
Sbjct: 260 EEVKFEFTPRGGNKVADRIARESISFSNYDPKL 279

BLAST of Lcy03g010900 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-11
Identity = 57/201 (28.36%), Postives = 87/201 (43.28%), Query Frame = 0

Query: 15  LLWGIWKNKNRVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAPSEINLSRGKSQPSH 74
           LLW +WKN+N ++       +  NA+ +     D L   R    A S        ++ S 
Sbjct: 363 LLWRLWKNRNELV----FRGREFNAQEVLRRAEDDLEEWRIRTEAES-CGTKPQVNRSSC 422

Query: 75  EYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSGFSRINKNWSVKFLEMRA 134
             W+PPP    K N DA+WN    R G+GW +R+  G   + G   + K  SV   E+ A
Sbjct: 423 GRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEA 482

Query: 135 ILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDLTEASFLAEDIAEMRKVV 194
           +   +  L   + +        +  ESD+  +I +LN  DE         +D+  +    
Sbjct: 483 MRWAVLSLSRFQYNY-------VIFESDSQVLIEILN-NDEIWPSLKPTIQDLQRLLSQF 542

Query: 195 EEISFEFCPRACNGDAHRMAR 216
            E+ F F PR  N  A R+AR
Sbjct: 543 TEVKFVFIPREGNTLAERVAR 550

BLAST of Lcy03g010900 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-05
Identity = 53/204 (25.98%), Postives = 81/204 (39.71%), Query Frame = 0

Query: 15  LLWGIWKNKN-RVLHSTSLPNQTVNARNLNPIITDCLALKRSNLNAPSEINLSRGKSQPS 74
           L+W IWK+ N  V + T    QT     LN    + L     N     + N +R      
Sbjct: 47  LMWRIWKSGNDLVFNHTRTKFQTTVEMALND-TKEWL----DNTMTNEQQNGNRNADPSR 106

Query: 75  HEYWKPPPLGSWKLNVDASWNASQNRGGVGWSMRDSSGSPIFSGFSRINKNWSVKFLEMR 134
           +  W PP     K N DAS +      G+GW +R+S G+ I  G  +     + +  E  
Sbjct: 107 NTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECS 166

Query: 135 AILDGLKVLPAIRASRSDLCIPPISVESDALSVINLLNGEDEDLTEASFLAEDIAEMRKV 194
            +      + AI+AS        +  E D  ++  ++N +  +     FL + I      
Sbjct: 167 TL------IWAIQASYG-FGHKKVIFEGDNQTITRMINTKSSNPRLQHFL-DTIQSWIPS 226

Query: 195 VEEISFEFCPRACNGDAHRMARIA 218
            E I F F  R  NG A  +A+ A
Sbjct: 227 FESIEFSFKHREQNGCADFLAKQA 237

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CP261.8e-2033.18uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DNV91.8e-2032.39uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DSV14.0e-2032.89uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
B8AMK52.5e-1427.40RNase H domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_... [more]
A0A803PZC55.5e-1430.95Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022155262.13.7e-2032.39uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143535.13.7e-2033.18uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022156777.18.2e-2032.89uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_024042448.11.7e-1730.66uncharacterized protein LOC112099303 [Citrus clementina][more]
XP_024033599.13.2e-1630.19uncharacterized protein LOC112095720 [Citrus clementina][more]
Match NameE-valueIdentityDescription
AT2G34320.17.1e-1429.11Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G29090.13.3e-1128.36Ribonuclease H-like superfamily protein [more]
AT5G65005.14.6e-0525.98Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 84..220
e-value: 1.9E-12
score: 49.2
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 88..215
e-value: 1.2E-17
score: 63.9
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 74..216
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 74..216
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 87..215
e-value: 1.01467E-18
score: 77.7396
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 84..220

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g010900.1Lcy03g010900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity