Lcy03g005370 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g005370
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	mitochondrial import inner membrane translocase subunit TIM23-2-like
Location	Chr03: 29523093 .. 29524057 (+)
RNA-Seq Expression	Lcy03g005370
Synteny	Lcy03g005370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGACCTTTTGAAGAACCCTCAATTCTCTCTTTCTCTCTCTCTCTCTCTGCGCCATTTCTTTCTCTCTCTTCAACCTTCAATTTCAACCGAACCCTAATTTTTGTTCCTTCAAAGATCCCCTTCTCCTCCTCCAATGGAAGATTCCTCCCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTCCACGTTCCGATCACCAAGCTCTACGAGCTCCCCACCTCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGCGCCCTTCTCGGCGGCGCCAGGGGCTCCGTCCAGGGACTCAGGGCCGCCGAGCCCGGCGACTCCATGAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTCGGCCGCAGGGCTGGCAACTCGCTTGGGATCCTTGGCTTGATTTTTGCCGGTTTGGAAAGCGGGGTTATTCATTTGAGAGGTTCGGATGATGTCTTGAATAGTATTGTCGCCGGATTGGGGACTGGCGCTCTTTACAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGCGGGCAAGCAGGCAGTTAAGAGATATGTGCCAATATAGGCATTGGCATGGCAATTAGCAAGTTACACAAATCTGTTTGGATGGTAAAGCATTGGGTTTCTTTGATTTTTATTTCTTGATATTCTTACACAGTTAGTTTATTCATGTATCGGTGAATAATATACACTATTAGCTCACTAATGCTCGCTCTTGTTATTTGCAATTGTTATACAATCAGTTGACTTGCCACTTATTGATGCCCTGGATTAATGGGGAACTTCTAATTTGTGTTTGATTGCTCTCTTCCTATTTGTAATTGATTCTGAACCCTTTATAAT

mRNA sequence

TTCGACCTTTTGAAGAACCCTCAATTCTCTCTTTCTCTCTCTCTCTCTCTGCGCCATTTCTTTCTCTCTCTTCAACCTTCAATTTCAACCGAACCCTAATTTTTGTTCCTTCAAAGATCCCCTTCTCCTCCTCCAATGGAAGATTCCTCCCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTCCACGTTCCGATCACCAAGCTCTACGAGCTCCCCACCTCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGCGCCCTTCTCGGCGGCGCCAGGGGCTCCGTCCAGGGACTCAGGGCCGCCGAGCCCGGCGACTCCATGAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTCGGCCGCAGGGCTGGCAACTCGCTTGGGATCCTTGGCTTGATTTTTGCCGGTTTGGAAAGCGGGGTTATTCATTTGAGAGGTTCGGATGATGTCTTGAATAGTATTGTCGCCGGATTGGGGACTGGCGCTCTTTACAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGCGGGCAAGCAGGCAGTTAAGAGATATGTGCCAATATAGGCATTGGCATGGCAATTAGCAAGTTACACAAATCTGTTTGGATGGTAAAGCATTGGGTTTCTTTGATTTTTATTTCTTGATATTCTTACACAGTTAGTTTATTCATGTATCGGTGAATAATATACACTATTAGCTCACTAATGCTCGCTCTTGTTATTTGCAATTGTTATACAATCAGTTGACTTGCCACTTATTGATGCCCTGGATTAATGGGGAACTTCTAATTTGTGTTTGATTGCTCTCTTCCTATTTGTAATTGATTCTGAACCCTTTATAAT

Coding sequence (CDS)

ATGGAAGATTCCTCCCAATCAGCCGGTGATCGGAAGACCCGTTTCTACCACCCCTACCAAGACCTCCACGTTCCGATCACCAAGCTCTACGAGCTCCCCACCTCCCCCGAGCATCTCTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTACACCGGAATCGGCTACTTGTCCGGCGCCCTTCTCGGCGGCGCCAGGGGCTCCGTCCAGGGACTCAGGGCCGCCGAGCCCGGCGACTCCATGAAGCTCCGTCTCAATCGAGTTCTCAACTCTGGGGGCCAGCTCGGCCGCAGGGCTGGCAACTCGCTTGGGATCCTTGGCTTGATTTTTGCCGGTTTGGAAAGCGGGGTTATTCATTTGAGAGGTTCGGATGATGTCTTGAATAGTATTGTCGCCGGATTGGGGACTGGCGCTCTTTACAAGGCGGCTTCAGGGCCGAGGTCGGCCGCCATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGCGGGCAAGCAGGCAGTTAAGAGATATGTGCCAATATAG

Protein sequence

MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI

Homology

[Close]

BLAST of Lcy03g005370 vs. ExPASy Swiss-Prot
Match: Q9S837 (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana OX=3702 GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-52
Identity = 104/184 (56.52%), Postives = 141/184 (76.63%), Query Frame = 0


Query: 1   MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S+     +K R Y+PYQ +++P  KLYELPTSPE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
            GY +G++LG  +G++ G+RAAE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLR-GSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           ESGV ++R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAVAG++ VKR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of Lcy03g005370 vs. ExPASy Swiss-Prot
Match: Q38820 (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana OX=3702 GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.7e-52
Identity = 106/182 (58.24%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 5   SQSAGDRKTRFYHPYQDLHVPITK---LYELPTSPEHLFFEEAARPHRSWGENLQYYTGI 64
           S    D  TR Y+PYQ+  VPI K   LY+LPTSPE LF EEA R  RSWGENL +YTG 
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 65  GYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 124
            YL G++ G + G + G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 125 SGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 184
           SG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

[Close]

BLAST of Lcy03g005370 vs. ExPASy Swiss-Prot
Match: Q9LNQ1 (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana OX=3702 GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.7e-52
Identity = 106/182 (58.24%), Postives = 133/182 (73.08%), Query Frame = 0


Query: 4   SSQSAGDRKTRFYHPYQDLHVPITK--LYELPTSPEHLFFEEAARPHRSWGENLQYYTGI 63
           SS    D  TR YHPYQ+  VPI    LY+LPTSPE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 123
           GYL+G++ G + G   G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of Lcy03g005370 vs. ExPASy Swiss-Prot
Match: Q9USM7 (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim23 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.8e-16
Identity = 58/160 (36.25%), Postives = 85/160 (53.12%), Query Frame = 0


Query: 17  HPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALLGGARGSV 76
           HP  DL  P+  L     +   L  +  A P R W ++L Y TG  YLSG  +GG  G  
Sbjct: 45  HPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLN 104

Query: 77  QGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGSDDVLNS 136
           +G++  +   S +LRLN +LN   + G   GNSLG+L L++ G+ S + + R      NS
Sbjct: 105 EGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENS 164

Query: 137 IVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQA 177
           + AG  TGALYK+  G R+ AI+ ++   AA      K++
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSLVATAAGIWTLAKRS 204

[Close]

BLAST of Lcy03g005370 vs. ExPASy Swiss-Prot
Match: P32897 (Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIM23 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.1e-12
Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 47  PHRSWGENLQYYTGIGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRA 106
           P R W ++L Y TG  YL G  +GG  G +QGL+   P    KL+LN VLN   + G   
Sbjct: 89  PSRGWTDDLCYGTGAVYLLGLGIGGFSGMMQGLQNIPPNSPGKLQLNTVLNHITKRGPFL 148

Query: 107 GNSLGILGLIFAGLESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIA 166
           GN+ GIL L +  + S +  LRG  D   SI AG  TGAL+K++ G +    + A+  +A
Sbjct: 149 GNNAGILALSYNIINSTIDALRGKHDTAGSIGAGALTGALFKSSKGLKPMGYSSAM--VA 208

Query: 167 AAAAV 172
           AA AV
Sbjct: 209 AACAV 211

[Close]

BLAST of Lcy03g005370 vs. ExPASy TrEMBL
Match: A0A6J1EFE6 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita moschata OX=3662 GN=LOC111432787 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.3e-90
Identity = 173/183 (94.54%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDS QSAGDRKTRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QG+RAAEPGD+MKLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lcy03g005370 vs. ExPASy TrEMBL
Match: A0A5A7V5P8 (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001650 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.3e-90
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SS+S  DRKTRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGALLGGARGS+QGLRAAEPGDS+KLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lcy03g005370 vs. ExPASy TrEMBL
Match: A0A1S3CJ69 (mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo OX=3656 GN=LOC103501018 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.3e-90
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SS+S  DRKTRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGALLGGARGS+QGLRAAEPGDS+KLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lcy03g005370 vs. ExPASy TrEMBL
Match: A0A6J1JGM0 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita maxima OX=3661 GN=LOC111485524 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.2e-89
Identity = 176/184 (95.65%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MEDSSQSAGDRK-TRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSS+S  DRK TRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSKSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGALLGGARGS+QGLRAAEPGDS+KLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRG+DDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Lcy03g005370 vs. ExPASy TrEMBL
Match: A0A6J1H9R2 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita moschata OX=3662 GN=LOC111461819 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 2.8e-89
Identity = 176/184 (95.65%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MEDSSQSAGDRK-TRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSS S  DRK TRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGALLGGARGS+QGLRAAEPGDS+KLRLNRVLNSGGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           LESGVIHLRG+DDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Lcy03g005370 vs. NCBI nr
Match: XP_038878582.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Benincasa hispida])

HSP 1 Score: 341.7 bits (875), Expect = 4.0e-90
Identity = 177/183 (96.72%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDSS+SA DRKTRFYHPYQDLHVPI KLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSSKSAHDRKTRFYHPYQDLHVPIAKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGALLGGARGSVQGLRAAEPGDS+KLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRG DDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGRDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lcy03g005370 vs. NCBI nr
Match: XP_022925513.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita moschata] >KAG7020879.1 Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 340.9 bits (873), Expect = 6.9e-90
Identity = 173/183 (94.54%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDS QSAGDRKTRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QG+RAAEPGD+MKLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGAIFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lcy03g005370 vs. NCBI nr
Match: XP_008462719.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo] >KAA0062574.1 mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo var. makuwa] >TYK28799.1 mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo var. makuwa])

HSP 1 Score: 340.5 bits (872), Expect = 9.0e-90
Identity = 175/183 (95.63%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SS+S  DRKTRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGALLGGARGS+QGLRAAEPGDS+KLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lcy03g005370 vs. NCBI nr
Match: XP_023531226.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-89
Identity = 173/183 (94.54%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDS QSAGDRKTRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGAL GGARGS+QG+RAAEPGD+MKLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSLQGIRAAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGV HLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVTHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lcy03g005370 vs. NCBI nr
Match: KAG6588317.1 (Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 339.3 bits (869), Expect = 2.0e-89
Identity = 172/183 (93.99%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDS QSAGDRKTRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSPQSAGDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QG+R AEPGD+MKLRLNRVLNSGGQ+GRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGAIFGGARGSLQGIRTAEPGDTMKLRLNRVLNSGGQVGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180
           ESGVIHLRGSDDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAVAGKQA KRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAIYKAASGPRSAAIAGAIGGIAAAAAVAGKQAAKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Lcy03g005370 vs. TAIR 10
Match: AT3G04800.1 (translocase inner membrane subunit 23-3 )

HSP 1 Score: 206.8 bits (525), Expect = 1.4e-53
Identity = 104/184 (56.52%), Postives = 141/184 (76.63%), Query Frame = 0


Query: 1   MEDSSQSAGDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S+     +K R Y+PYQ +++P  KLYELPTSPE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120
            GY +G++LG  +G++ G+RAAE G+S+K+R NR+LNSGG + RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIHLR-GSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180
           ESGV ++R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAVAG++ VKR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of Lcy03g005370 vs. TAIR 10
Match: AT1G72750.1 (translocase inner membrane subunit 23-2 )

HSP 1 Score: 206.5 bits (524), Expect = 1.9e-53
Identity = 106/182 (58.24%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 5   SQSAGDRKTRFYHPYQDLHVPITK---LYELPTSPEHLFFEEAARPHRSWGENLQYYTGI 64
           S    D  TR Y+PYQ+  VPI K   LY+LPTSPE LF EEA R  RSWGENL +YTG 
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 65  GYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 124
            YL G++ G + G + G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GL++AG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 125 SGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 184
           SG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A VAGKQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

[Close]

BLAST of Lcy03g005370 vs. TAIR 10
Match: AT1G17530.1 (translocase of inner mitochondrial membrane 23 )

HSP 1 Score: 204.9 bits (520), Expect = 5.5e-53
Identity = 106/182 (58.24%), Postives = 133/182 (73.08%), Query Frame = 0


Query: 4   SSQSAGDRKTRFYHPYQDLHVPITK--LYELPTSPEHLFFEEAARPHRSWGENLQYYTGI 63
           SS    D  TR YHPYQ+  VPI    LY+LPTSPE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGALLGGARGSVQGLRAAEPGDSMKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLE 123
           GYL+G++ G + G   G+++ E GD+ KL++NR+LNS GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIHLRGSDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A VAGKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

The following BLAST results are available for this feature:

BLAST of Lcy03g005370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S837	2.0e-52	56.52	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
Q38820	2.7e-52	58.24	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
Q9LNQ1	7.7e-52	58.24	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
Q9USM7	6.8e-16	36.25	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]
P32897	2.1e-12	41.60	Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces c...	[more]

BLAST of Lcy03g005370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EFE6	3.3e-90	94.54	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]
A0A5A7V5P8	4.3e-90	95.63	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo ...	[more]
A0A1S3CJ69	4.3e-90	95.63	mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo ...	[more]
A0A6J1JGM0	2.2e-89	95.65	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]
A0A6J1H9R2	2.8e-89	95.65	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]

BLAST of Lcy03g005370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878582.1	4.0e-90	96.72	mitochondrial import inner membrane translocase subunit TIM23-2-like [Benincasa ...	[more]
XP_022925513.1	6.9e-90	94.54	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_008462719.1	9.0e-90	95.63	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
XP_023531226.1	1.5e-89	94.54	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
KAG6588317.1	2.0e-89	93.99	Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurb...	[more]

BLAST of Lcy03g005370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04800.1	1.4e-53	56.52	translocase inner membrane subunit 23-3	[more]
AT1G72750.1	1.9e-53	58.24	translocase inner membrane subunit 23-2	[more]
AT1G17530.1	5.5e-53	58.24	translocase of inner mitochondrial membrane 23	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 57..165 e-value: 1.2E-23 score: 83.7
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 1..183
None	No IPR available	PANTHER	PTHR15371:SF24	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-3	coord: 1..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g005370.1	Lcy03g005370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex
molecular_function	GO:0008320	protein transmembrane transporter activity