Lcy03g004890 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g004890
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr03: 25205383 .. 25206374 (-)
RNA-Seq Expression	Lcy03g004890
Synteny	Lcy03g004890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAGTTCGTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTTGAGTCCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACCTGATGAGGGAGAAAATGTCGGGACGAGACGTTCCAGCACAGAGCTACATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTACAGAGATGATGGGTCCTGGATGTAGTGGCTTTGGCTGGAACGAGGAATTTAAGTGCATCGAGGCGGAGAAAGAAACATTCGACCTGTGGGTGAAGGTAAGAACGTTTTACCGTGTTAACTACTCAAAATTTATTGCTTCCTAACATAAACTTTCGGGTGAATGCAGCATCATCCAATCGCAAAGGGCATGCTTAACAAGCCTTTCCTCCATTTTGAGGACCTCGCATATGTATTTGGGAAGGATAGAGCTACGGGGGGGGGGGTGTCAGAGGTGATGGCAGAGATGGGGTCTAACATACCAGATGATGCAGTAAACCTTAGTGGATCCCCGAACAACGACATCCCCATCCCACCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCAGGTGACGCCGAACAGTCAAACTTACGCAACTGGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGTTGTGAATCGAGGAATGGCCTCGTTCACAGAACAACTTAAGTCCATTGCTGACTGGCCTGCCACAAAACGCGCCACAGAGACTGAGTTCCGGGATAAAATTGTCTCCCACTTGATGGAGGTACCAGACCTGGACAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATCAAAGCGACAGAGAGCTTCTTATCTATTCTTGCTCCTCTGAAGTTGGAGTATTGTGAATACCTCTTGGACAAACACAGTTGA

mRNA sequence

ATGACCAGTTCGTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTTGAGTCCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACCTGATGAGGGAGAAAATGTCGGGACGAGACGTTCCAGCACAGAGCTACATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTACAGAGATGATGGGTCCTGGATGTAGTGGCTTTGGCTGGAACGAGGAATTTAAGTGCATCGAGGCGGAGAAAGAAACATTCGACCTGTGGGTGAAGCATCATCCAATCGCAAAGGGCATGCTTAACAAGCCTTTCCTCCATTTTGAGGACCTCGCATATGTATTTGGGAAGGATAGAGCTACGGGGGGGGGGGTGTCAGAGGTGATGGCAGAGATGGGGTCTAACATACCAGATGATGCAGTAAACCTTAGTGGATCCCCGAACAACGACATCCCCATCCCACCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCAGGTGACGCCGAACAGTCAAACTTACGCAACTGGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGTTGTGAATCGAGGAATGGCCTCGTTCACAGAACAACTTAAGTCCATTGCTGACTGGCCTGCCACAAAACGCGCCACAGAGACTGAGTTCCGGGATAAAATTGTCTCCCACTTGATGGAGGTACCAGACCTGGACAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATCAAAGCGACAGAGAGCTTCTTATCTATTCTTGCTCCTCTGAAGTTGGAGTATTGTGAATACCTCTTGGACAAACACAGTTGA

Coding sequence (CDS)

ATGACCAGTTCGTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTTGAGTCCCTCGTGTCCTTAGTTCATGTGGGCGGTTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACCTGATGAGGGAGAAAATGTCGGGACGAGACGTTCCAGCACAGAGCTACATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAGGCTATTACAGAGATGATGGGTCCTGGATGTAGTGGCTTTGGCTGGAACGAGGAATTTAAGTGCATCGAGGCGGAGAAAGAAACATTCGACCTGTGGGTGAAGCATCATCCAATCGCAAAGGGCATGCTTAACAAGCCTTTCCTCCATTTTGAGGACCTCGCATATGTATTTGGGAAGGATAGAGCTACGGGGGGGGGGGTGTCAGAGGTGATGGCAGAGATGGGGTCTAACATACCAGATGATGCAGTAAACCTTAGTGGATCCCCGAACAACGACATCCCCATCCCACCGTTCACCATGCCTAATGTGAACATGTCAGAGGATGAGCCTCAGGTGACGCCGAACAGTCAAACTTACGCAACTGGAAATTCGTCACGTGGTAGTAAGAGAAAGAGATCTGGGCCTAACATGCACATCGCAGAAGTTGTGAATCGAGGAATGGCCTCGTTCACAGAACAACTTAAGTCCATTGCTGACTGGCCTGCCACAAAACGCGCCACAGAGACTGAGTTCCGGGATAAAATTGTCTCCCACTTGATGGAGGTACCAGACCTGGACAACCGAAAAAGGGTGAAGCTCATGGATATCCTTTTCAATAACATCAAAGCGACAGAGAGCTTCTTATCTATTCTTGCTCCTCTGAAGTTGGAGTATTGTGAATACCTCTTGGACAAACACAGTTGA

Protein sequence

MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRDVPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKGMLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIPDDAVNLSGSPNNDIPIPPFTMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIADWPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEYCEYLLDKHS

Homology

[Close]

BLAST of Lcy03g004890 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 6.6e-75
Identity = 155/305 (50.82%), Postives = 193/305 (63.28%), Query Frame = 0


Query: 1   MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRD 60
           M S SRAP+HTWT  E+ K VE LV LV  GGWRSDNGTF+ GY AQL+ +M EK+ G +
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  VPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKG 120
           +   S I+  V++LKK Y AI EM GP CSGFGWNEEF+CI AE++ FD W+K HP AKG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 MLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIP---DDAVNLSGSPNNDIPIPPF 180
           +L+K F +++DL+YVFGKDRATG   SE    +GSN+    +D + L  S + D  IP  
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGAR-SETFPNVGSNVSNMFNDTIPLGDSHDED--IPTM 180

Query: 181 TMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIA 240
               V+MS DE       Q     N S  SKRKR        EV+   M    EQLK+IA
Sbjct: 181 YSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIA 240

Query: 241 DWPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEY 300
           DWP  KRA E E R ++V  L ++P L ++ R KLM ILF +++A E FLSI   LKLEY
Sbjct: 241 DWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEY 300

Query: 301 CEYLL 303
           C  LL
Sbjct: 301 CNILL 302

[Close]

BLAST of Lcy03g004890 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 6.6e-75
Identity = 155/305 (50.82%), Postives = 193/305 (63.28%), Query Frame = 0


Query: 1   MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRD 60
           M S SRAP+HTWT  E+ K VE LV LV  GGWRSDNGTF+ GY AQL+ +M EK+ G +
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  VPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKG 120
           +   S I+  V++LKK Y AI EM GP CSGFGWNEEF+CI AE++ FD W+K HP AKG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 MLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIP---DDAVNLSGSPNNDIPIPPF 180
           +L+K F +++DL+YVFGKDRATG   SE    +GSN+    +D + L  S + D  IP  
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGAR-SETFPNVGSNVSNMFNDTIPLGDSHDED--IPTM 180

Query: 181 TMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIA 240
               V+MS DE       Q     N S  SKRKR        EV+   M    EQLK+IA
Sbjct: 181 YSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIA 240

Query: 241 DWPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEY 300
           DWP  KRA E E R ++V  L ++P L ++ R KLM ILF +++A E FLSI   LKLEY
Sbjct: 241 DWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEY 300

Query: 301 CEYLL 303
           C  LL
Sbjct: 301 CNILL 302

[Close]

BLAST of Lcy03g004890 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 146/307 (47.56%), Postives = 193/307 (62.87%), Query Frame = 0


Query: 1   MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRD 60
           MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+ G +
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKG 120
           + A S I+SR++ +K+ + A+ EM GP CSGFGWN+E KCI AEKE FD W   HP AKG
Sbjct: 61  IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 MLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIPD--DAVNLSGSPNNDIPIPPFT 180
           +LNK F+H+++L+YVFGKDRATGG  +E  A++GSN P   DAV     P+ D   PP  
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGR-AESFADIGSNDPPGYDAVAADAMPDTD--FPPMY 180

Query: 181 MPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIAD 240
            P +NMS D+   T  ++     N S GSKRKR G      ++V   +    EQL  IA+
Sbjct: 181 SPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 240

Query: 241 WPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEYC 300
           WP  +R   T+ R +IV HL  +P+L    R +LM IL  N+   ++FL +   +K  YC
Sbjct: 241 WPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYC 300

Query: 301 EYLLDKH 306
             +L ++
Sbjct: 301 SLILQEN 301

[Close]

BLAST of Lcy03g004890 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-68
Identity = 145/307 (47.23%), Postives = 192/307 (62.54%), Query Frame = 0


Query: 1   MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRD 60
           MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+ G +
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKG 120
           + A S I+SR++ +K+ + A+ EM GP CSGFGWN+E KCI AEKE FD W   HP AKG
Sbjct: 61  IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 MLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIPD--DAVNLSGSPNNDIPIPPFT 180
           +LNK F+H+++L+YVFGKDRATGG  +E  A++GSN P   DA      P+ D   PP  
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGR-AESFADIGSNDPPGYDAEAADAMPDTD--FPPMY 180

Query: 181 MPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIAD 240
            P +NMS D+   T  ++     N S GSKRKR G      ++V   +    EQL  IA+
Sbjct: 181 SPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 240

Query: 241 WPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEYC 300
           WP  +R   T+ R +IV HL  +P+L    R +LM IL  N+   ++FL +   +K  YC
Sbjct: 241 WPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYC 300

Query: 301 EYLLDKH 306
             +L ++
Sbjct: 301 SLILQEN 301

[Close]

BLAST of Lcy03g004890 vs. ExPASy TrEMBL
Match: A0A5D3CBF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00350 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 145/307 (47.23%), Postives = 192/307 (62.54%), Query Frame = 0


Query: 1   MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRD 60
           MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+ G +
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKG 120
           + A S I+SR++ +K+ + A+ EM GP CSGFGWN+E KCI AEKE FD W   HP AKG
Sbjct: 61  IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 MLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIPD--DAVNLSGSPNNDIPIPPFT 180
           +LNK F+H+++L+YVFGKDRATGG  +E  A++GSN P   DA      P+ D   PP  
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGR-AESFADIGSNDPPGYDAGAADAMPDTD--FPPMY 180

Query: 181 MPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIAD 240
            P +NMS D+   T  ++     N S GSKRKR G      ++V   +    EQL  IA+
Sbjct: 181 SPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 240

Query: 241 WPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEYC 300
           WP  +R   T+ R +IV HL  +P+L    R +LM IL  N+   ++FL +   +K  YC
Sbjct: 241 WPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYC 300

Query: 301 EYLLDKH 306
             +L ++
Sbjct: 301 SLILQEN 301

[Close]

BLAST of Lcy03g004890 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-74
Identity = 155/305 (50.82%), Postives = 193/305 (63.28%), Query Frame = 0


Query: 1   MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRD 60
           M S SRAP+HTWT  E+ K VE LV LV  GGWRSDNGTF+ GY AQL+ +M EK+ G +
Sbjct: 1   MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61  VPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKG 120
           +   S I+  V++LKK Y AI EM GP CSGFGWNEEF+CI AE++ FD W+K HP AKG
Sbjct: 61  IQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKG 120

Query: 121 MLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIP---DDAVNLSGSPNNDIPIPPF 180
           +L+K F +++DL+YVFGKDRATG   SE    +GSN+    +D + L  S + D  IP  
Sbjct: 121 LLHKSFPYYDDLSYVFGKDRATGAR-SETFPNVGSNVSNMFNDTIPLGDSHDED--IPTM 180

Query: 181 TMPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIA 240
               V+MS DE       Q     N S  SKRKR        EV+   M    EQLK+IA
Sbjct: 181 YSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIA 240

Query: 241 DWPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEY 300
           DWP  KRA E E R ++V  L ++P L ++ R KLM ILF +++A E FLSI   LKLEY
Sbjct: 241 DWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLEY 300

Query: 301 CEYLL 303
           C  LL
Sbjct: 301 CNILL 302

[Close]

BLAST of Lcy03g004890 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 6.6e-69
Identity = 146/307 (47.56%), Postives = 193/307 (62.87%), Query Frame = 0


Query: 1   MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRD 60
           MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+ G +
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKG 120
           + A S I+SR++ +K+ + A+ EM GP CSGFGWN+E KCI AEKE FD W   HP AKG
Sbjct: 61  IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 MLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIPD--DAVNLSGSPNNDIPIPPFT 180
           +LNK F+H+++L+YVFGKDRATGG  +E  A++GSN P   DAV     P+ D   PP  
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGR-AESFADIGSNDPPGYDAVAADAMPDTD--FPPMY 180

Query: 181 MPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIAD 240
            P +NMS D+   T  ++     N S GSKRKR G      ++V   +    EQL  IA+
Sbjct: 181 SPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 240

Query: 241 WPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEYC 300
           WP  +R   T+ R +IV HL  +P+L    R +LM IL  N+   ++FL +   +K  YC
Sbjct: 241 WPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYC 300

Query: 301 EYLLDKH 306
             +L ++
Sbjct: 301 SLILQEN 301

[Close]

BLAST of Lcy03g004890 vs. NCBI nr
Match: KAA0057083.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 269.6 bits (688), Expect = 3.3e-68
Identity = 145/307 (47.23%), Postives = 192/307 (62.54%), Query Frame = 0


Query: 1   MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRD 60
           MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+ G +
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKG 120
           + A S I+SR++ +K+ + A+ EM GP CSGFGWN+E KCI AEKE FD W   HP AKG
Sbjct: 61  IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 MLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIPD--DAVNLSGSPNNDIPIPPFT 180
           +LNK F+H+++L+YVFGKDRATGG  +E  A++GSN P   DA      P+ D   PP  
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGR-AESFADIGSNDPPGYDAEAADAMPDTD--FPPMY 180

Query: 181 MPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIAD 240
            P +NMS D+   T  ++     N S GSKRKR G      ++V   +    EQL  IA+
Sbjct: 181 SPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 240

Query: 241 WPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEYC 300
           WP  +R   T+ R +IV HL  +P+L    R +LM IL  N+   ++FL +   +K  YC
Sbjct: 241 WPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYC 300

Query: 301 EYLLDKH 306
             +L ++
Sbjct: 301 SLILQEN 301

[Close]

BLAST of Lcy03g004890 vs. NCBI nr
Match: KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 269.2 bits (687), Expect = 4.2e-68
Identity = 145/307 (47.23%), Postives = 192/307 (62.54%), Query Frame = 0


Query: 1   MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRD 60
           MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+ G +
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61  VPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKG 120
           + A S I+SR++ +K+ + A+ EM GP CSGFGWN+E KCI AEKE FD W   HP AKG
Sbjct: 61  IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 120

Query: 121 MLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIPD--DAVNLSGSPNNDIPIPPFT 180
           +LNK F+H+++L+YVFGKDRATGG  +E  A++GSN P   DA      P+ D   PP  
Sbjct: 121 LLNKSFVHYDELSYVFGKDRATGGR-AESFADIGSNDPPGYDAGAADAMPDTD--FPPMY 180

Query: 181 MPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIAD 240
            P +NMS D+   T  ++     N S GSKRKR G      ++V   +    EQL  IA+
Sbjct: 181 SPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 240

Query: 241 WPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEYC 300
           WP  +R   T+ R +IV HL  +P+L    R +LM IL  N+   ++FL +   +K  YC
Sbjct: 241 WPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYC 300

Query: 301 EYLLDKH 306
             +L ++
Sbjct: 301 SLILQEN 301

[Close]

BLAST of Lcy03g004890 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 269.2 bits (687), Expect = 4.2e-68
Identity = 145/307 (47.23%), Postives = 192/307 (62.54%), Query Frame = 0


Query: 1   MTSSSRAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTFRSGYQAQLEHLMREKMSGRD 60
           MTSSSR P+HTWT  E+A LVE LV LV+ GGWRSDNGTFR GY  QL  +M  K+ G +
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  VPAQSYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKG 120
           + A S I+SR++ +K+ + A+ EM GP CSGFGWN+E KCI AEKE FD W   HP AKG
Sbjct: 416 IHA-STIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKG 475

Query: 121 MLNKPFLHFEDLAYVFGKDRATGGGVSEVMAEMGSNIPD--DAVNLSGSPNNDIPIPPFT 180
           +LNK F+H+++L+YVFGKDRATGG  +E  A++GSN P   DA      P+ D   PP  
Sbjct: 476 LLNKSFVHYDELSYVFGKDRATGGR-AESFADIGSNDPPGYDAGAADAMPDTD--FPPMY 535

Query: 181 MPNVNMSEDEPQVTPNSQTYATGNSSRGSKRKRSGPNMHIAEVVNRGMASFTEQLKSIAD 240
            P +NMS D+   T  ++     N S GSKRKR G      ++V   +    EQL  IA+
Sbjct: 536 SPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 595

Query: 241 WPATKRATETEFRDKIVSHLMEVPDLDNRKRVKLMDILFNNIKATESFLSILAPLKLEYC 300
           WP  +R   T+ R +IV HL  +P+L    R +LM IL  N+   ++FL +   +K  YC
Sbjct: 596 WPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYC 655

Query: 301 EYLLDKH 306
             +L ++
Sbjct: 656 SLILQEN 656

[Close]

BLAST of Lcy03g004890 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-09
Identity = 42/139 (30.22%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 6   RAPRHTWTNNEDAKLVESLVSLVHVGGWRSDNGTF-RSGYQAQLEHLMREKMSGRDVPAQ 65
           + P + WT +E   L+E +        WR  +G   +   +++L   + +++ G +   +
Sbjct: 11  KGPYNQWTPDETDVLIELIRQ-----NWRDSSGIIGKLTVESKLLPALNKRL-GCNKNHK 70

Query: 66  SYIESRVRTLKKQYQAITEMMGPGCSGFGWNEEFKCIEAEKETFDLWVKHHPIAKGMLNK 125
           +Y+ SR++ LK  YQ+  ++     SGFGW+ E K   A  E +  ++K HP  K M  +
Sbjct: 71  NYM-SRLKFLKNLYQSYLDLK-RFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTE 130

Query: 126 PFLHFEDLAYVFGKDRATG 144
              HFEDL  +FG   ATG
Sbjct: 131 SIDHFEDLQIIFGDVVATG 141

The following BLAST results are available for this feature:

BLAST of Lcy03g004890 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g004890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	6.6e-75	50.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	6.6e-75	50.82	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5D3DPR5	3.2e-69	47.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UME4	1.6e-68	47.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CBF7	2.1e-68	47.23	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy03g004890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	1.4e-74	50.82	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0035621.1	6.6e-69	47.56	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0057083.1	3.3e-68	47.23	retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon p...	[more]
KAA0038122.1	4.2e-68	47.23	retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon...	[more]
ADN34114.1	4.2e-68	47.23	retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of Lcy03g004890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	2.8e-09	30.22	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 11..107 e-value: 2.7E-7 score: 31.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..209
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 4..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g004890.1	Lcy03g004890.1	mRNA