Lcy03g003830 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g003830
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionINVOLVED IN: 10-formyltetrahydrofolate bi s in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
LocationChr03: 17755767 .. 17755931 (+)
RNA-Seq ExpressionLcy03g003830
SyntenyLcy03g003830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTGACCTAGTGGAGAAATCCTCAAGAAGCAGGTTGAAAAATGGTCAGACTTCTGTCCTCGATCAATTCGATCTCGATTTCCTCGACGATCCATTTTCTTTACAAGGAAAATTCGATGTCGAAGGAACATTCGATGTCGAAGGAAATTTCGACAACTAG

mRNA sequence

ATGGCTTCTGACCTAGTGGAGAAATCCTCAAGAAGCAGGTTGAAAAATGGTCAGACTTCTGTCCTCGATCAATTCGATCTCGATTTCCTCGACGATCCATTTTCTTTACAAGGAAAATTCGATGTCGAAGGAACATTCGATGTCGAAGGAAATTTCGACAACTAG

Coding sequence (CDS)

ATGGCTTCTGACCTAGTGGAGAAATCCTCAAGAAGCAGGTTGAAAAATGGTCAGACTTCTGTCCTCGATCAATTCGATCTCGATTTCCTCGACGATCCATTTTCTTTACAAGGAAAATTCGATGTCGAAGGAACATTCGATGTCGAAGGAAATTTCGACAACTAG

Protein sequence

MASDLVEKSSRSRLKNGQTSVLDQFDLDFLDDPFSLQGKFDVEGTFDVEGNFDN
Homology
BLAST of Lcy03g003830 vs. TAIR 10
Match: AT4G24380.1 (INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 5.3e-04
Identity = 19/28 (67.86%), Postives = 21/28 (75.00%), Query Frame = 0

Query: 20 SVLDQFDLDFLDDPFSLQGKFDVEGTFD 48
          SV+D+ DL FLD PF  QGK DVEG FD
Sbjct: 37 SVIDRLDLVFLDAPFPCQGKSDVEGIFD 64

BLAST of Lcy03g003830 vs. TAIR 10
Match: AT4G24380.2 (CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 5.3e-04
Identity = 19/28 (67.86%), Postives = 21/28 (75.00%), Query Frame = 0

Query: 20 SVLDQFDLDFLDDPFSLQGKFDVEGTFD 48
          SV+D+ DL FLD PF  QGK DVEG FD
Sbjct: 37 SVIDRLDLVFLDAPFPCQGKSDVEGIFD 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT4G24380.15.3e-0467.86INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and deri... [more]
AT4G24380.25.3e-0467.86CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidop... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g003830.1Lcy03g003830.1mRNA