Lcy03g002820 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g002820
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotran_gag_3 domain-containing protein
LocationChr03: 10436526 .. 10442679 (-)
RNA-Seq ExpressionLcy03g002820
SyntenyLcy03g002820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTACTGCTACTCCTTCTCTCAAGGATCTTCATTCTCCAATTTTTCTATTAGCCAATATCTGCAACCTTATTTCAATCCGCTTGGATTCATCGAATTATGTTTTGTGGAAGTTTCAGTTTTCTTCCATGTTAAGGGCACATAAACTTTTTGGATTTGTTGATGGATCTACTCCTGCTCCATCAGAGACAATTTCGTCTTCTTCAACTGCTGAATCGCCTTCTGGAGGTTCTGTATCTACAGTCACTGTGAGTCCGAATCCTCTGTATGAAGACTGGCTTGCGAAGGATCAAGCCTTAATGACTTTAATTAACGCCACGTTATCTCCTGAAGCATTGGCCTACATTGTTGGTTGTAAGACATCACAGGAAGAATGGGAAGCCCTAGAGCATCATTATTCTTCGTCTACGCGATCTAACATTGTCAATCTCAAGACTGATCTTCAGTCCATTATAAAGATGACCAATGAATCGATTGACTCGTACATCAAACGAATTAAAGAAATCAAGGACAAACTCGCCAATGTTTCCTCAGTGGTTCAAGATGAAGATCTGTTGATCTATGCTTTAAACGGCTTACCTGTTGAATACAATGTTTTTCGCACTTCTATGCGTACTCGGTCTCAGTCGGTGAGTTTTGCTGAACTTCATGTATTACTAAAATCAGAGGAATCTGCTCTAGAAAAACAATCTAAGTGTGAGGATTTAGTGGTTCAACCTACGGCGATGTATGCCTCAAGTCAGTCGAATCAGTTTCGCCCTAATCCGCCCAGTCAATTTCCCTCTTTCAGAGGTCGTGGACGCAGTCAAGGGCGTAATTCTTGCCGTGGTCAAGGACGATCGAATAATACTTAGTTTTCCCCATCTAGCCAAGGTCGTGGCAAATTCTATGGTACTTCGAGTCCATCTTCCACTGTTGATGGTCGCCTGCACTGTCAAATCTGCAATCGTCCTGGTCACATGGCTCTCGACTGCTATAATCGGATGAACTATAATTTTCAGGGCCGGCATCCTCCTCCTCAACTTGCTGCCATGGTTGCAATGCAGAATAATCAGTATCTTGCCTCACATAACTCATCTTCTTCACCATGGCTTGCTGATTCAGGGTGTAATGCCCATGTCACTTCCGATTTAGCCAATTTGTCGGTATCCAGTGAATATGATGGTGAAGAAAACATTGCAGTTGGTAATGGTCATTCACTTGCGATTACTCACACAGGTTGTGGCACTATCTCCTACTCTCCTTCTTCTTCCTTTAAACTTTCTAACCTTTTATGTGTCCCTCATATCTCCACGAATTTATTGTTTGTTCATCAACTTTGTGTTGATAACAATTGCTCAATTCTATTTGATTCTGACAAATTTGTTGTTCAGGACAAACCTACGGGCAAAATTTTATTCCAAGGACCTAGCATAAATGGCCTTTACCCGATTCATCCGTGCAATCCAGCCTCTGCTTCAGTTTCTTCTTCACCCATTTTGGAGAGTTCTTCTGCTGCTCATGTTGGTATCAAGTCCTCATCTACTCTTTGGCATAATCGGTTAGGCCATCCACACTTACAAGTTCTTAATTCCATTCTACATACTTTATTTCCCTTTTCTAGTTCCAAATTTGTATCTTTCTATCCTTTACAGCTTGTACATAGCGATGTATGGGGCCCTGCTCCTATGACTTCAATAAATGGCTATAAATACTATGTTTCCTTTGTAGATGACTTCACCAAATACACTTGGTTCTTTCCTATTTCTCGTAAATCCGATGTCTCTCTAATATTTCAAAAATTTAAGCCCTTTGTTGAAAATCAATTGTCTTCTCGGATTCAAGTCCTTAGAACTGATGGTGGAGGAGAATTCTTAAACCGTGATCTTGCCTCTTACCTTGAATCTAATGGTATCCTCCATCAAAAGTCCTGTGCTTACACCCCTCAACAAAATAGTGTAGCCGAACGCAAGCATCGTCATCTTGTTGAAGCTGCCTTATGTCTTATGACTCGTGCTTCCTTAACTATTAGCTTTTGGTCCTATGCCTTTGCTGTCGCTGTCTTCCTCATTAACCGTCTTCCCTCCATCCATCTTAATCATAAATCCCCCTTTGAGCTTTTCTTCCATCGACTTCCTGATTACAAACACCTTAAAGTGTTTGGTTGCGCTTGCTATCCTCTTCTTAAGCCTTATAATGATCACAAACTTCAGCCCAAAACTTCTCGATGTGTTTTTCTCGGTTATCCCTTGGAGTATAAAGGTTATTTGTGCTATAACATGAGCAGTGGTAAACTCTTCATCTCCCGACATGTTATTTTTGATGAAACCTTATTCCCCTTTGCTGCCTCTTCACCTTCTTCCTCATCTAGTCCCACATCTTCCTCCTCCTTTACTGACATTCCTTTATCTCTTTTCCTTAATAGTGATATGACACAACCTTGTGATAATTTGGGAGTTGAATCCTCTATTTTACCATCTGTTCTCGCACAAAGTTCATCTAGTGCAGCTGCTGTAACCGAGACTACTGATGTCCCTTGTCCTGTTGTGACTGAGACTTCATCCTATGCAAACTCGCAGCAAATCTGGCATTTCTAAGCGCAAAGTTTTTGTTGCTGCCACTACTTTAACTAACAATTGCATGGATACTGAACCTACTTCTTACACTCAGGCTTCTAAACACTCTGTTTGGCAGCAAGCTATGTCTGAAGAATATGATGCCTTGTTAAAACAGGGTACTTGGACTCTCACACCTTTACCTCCTGGCAAGAGTGCCATTGGCTGCAAATGGGTGTACCGCATCAAAAGACATCCTGATGCAAGTGTTGCTCTATATAAGGCCCGCTTGGTAGCTAAAGGCTATCATCAAGAGGAAGGCATTGATTATGATGAGACCTTCAGTCCAGTTGTAAAGAAGCCTACGGTACGCATTATTCTTACTCTAGCCTCTCATTATGGTTGGTCCTTACGACAACTAGATGTTAAGAATGCGTTTCTTCATGGTGAGCTTCGTGAAGAGGTTTATATGCAACAACCTCAGGGTTTTGTTCAAAACTCTTCACCTCCGTTGGTTTGCAAACTCATGAAGTCTCTTTATGGCCTCAAGCAAGCTCCTCGCTCTTGGTTTGAATGTTTCACTTCTCATCTCTTTACATTGGGTTTTCATGCTTCTAATGCTGACTCGTCTTTATTCATTCGAAAGCATGGTCGTTCTATTACATATTTGCTTCTCTATGTGGATGACATCATTGTCACCGGGAATGACTTTTCTTATATCACTAGTCTTATATCTCAGTTGCGCATGAAGTTTGATATGATTGATTTAGGAGCTCTTAAATACTTTTTGGGTCTTGAGGTTACTTGCTCTACTGCTGGAATTTATGTCACTTAATCTAAATATGCCAAGGATGTGCTACATCATTTTGGCATGACTGGCTGCAAACCTTGTACGACTCCTATTTCCTTATGCTCCTTTAATGATGTGGATGATATATTGTGTTCACCCGAGGACAACAAGGCTTATCGTGCTATTATTGGAGCATTGCAGTATCTTACGTTTACTCATCCCGATAGTGCTTTTAGTGTGAGCAAGTTATCTCAATTCATGCACTCTCCATCTCAGTGTCACTTGACTGCCGCAAAATGAGTCTTAAGGTACTTGAATGGTTCTCTGAACCGTGGTATTCTGTTTAAAAGATCTCGTGGAGGACTTCATCTAACAGCATTTTCAGACTCTGACTGGACTGGCGATTCCCTCGATAGGAGATCAACAACTGGTTTTGTGATATTTCTTGGTGAAAATCCAATCTCCTGGGTTTTTAAGAAGCAGTCAACGGTGTCTCGAAGCTGAAGGGAATAAAAGTCCCCATGCAGCGGAAGCGCATCGAAAGGACCTTACGCCATATATTAATTAACATTAAAATACCGTTACGAAAAACTCAAATACACTTTAAGCACACTTTAAAGTTGCAGGAAAAATCGGTTTAAACATGCTGAAAAATAAATCTAAATTTATTTGCATGCTTTTCTAAAGAAAAGGGCAAGAACCGTTACAAACCTTCGTTGTAGACTTGACCGTTCTTCGCCAACGACGCTCCAACGATCGAAAATGCAGCAGCCTCCTAGTCTTATAATCGCTGGAAATTTCTTCTTGATTGACACAATAACCACAGAGGTTACACCGGTATGTCTCTAAGTCTAGGAGGCAAAAGACTTGTGGAGAGTATCCTTGACCAATTAGGTCTAGTGTTCTATTTATAGAAGAGAAGCCATGAATAAAATATTCAATTAAATCAATCTTTTCCAAAATTGATTCAATCTTATTCCTTATTTAATCAATCCATGATCAATCAATTCCACAATTGATTAATCTTTTCCACAAATGACTAATTACTTCCATAAGTGATTAGATCATTTCCATAAATGATTAATCACTTCCTTAAGTGATTAATTATTTCCATAATTGATTAATTCCCGGTTAATGAATTCTTTAATTAATTAACCACCAATTAAATATCACATATTTAATTTCCGGCCTTGAATTAATTAATTTGCCCAAATAGATTTTAGGCCTTAAATTAATTAATTCATTATTTGAACTCTTTCAAACTTCCATAAATTTATATTAATATTTGAATTTCTTCAAATATTAATTTCTCTCATAATAATATATCAATATATATTATATTTGTTTCCCTTGGTAAATTGAACATTTTCAATTTACATTTATTACTTAGTTGCCTCAAATTACTTTATGAGCTACCAGTGGGACCTAATGGACCTGCAGATCAGAAGCTCCAACGATATGAGATTAATTGGTCAAACTCATTAACCAAATTAATCAATATTCGTCAACTGTGTGTACATTCCACTATAGACTCACAATTGCACTCTTCTCACTGCAGATATATTTTCTGTGTCCACGGATATAGACCAATATCGACTAGTTAGTCCTTCACGAGTGTCCGTAACACCAGCTGGGTCAAATTACCGTTTTACCCGTGGGTTACTTCTATTTCCTTAAGTATCAGTTCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCATCAAACAGAAAACCCTCTCGTGCCATTGAGAGGGTAGGGCCCTTTGTTCAAGACTCGGAGTAACCACTTAAGGGAACACTCATCTGCTTCCCTAAAGTCGAGAAGGAGTGAATTCCATCTTGTACGATTATGTTCCCAGCTCCCCATTCGGTCTTGTCCCCAAAATGGTAGGCTTATTGAGTCGACGTATTGGCCACTCTCACCCATGCAAATCAAAGGACAATCTCTCATGAGCAGGAGTCCATAATCAACTCAGGATTAAGACTAAGTTGTCTAGGTCGTCCTAGTGAAATAGAAAACCAACTAGTTAACGGTGTTATAACTAGTGGTTACTATTTCGCGGTCCGGTCTTATGCAAACTCATTGCATAGGATACCCCCATTCGCATGTCTCCTACACGAACGCGTTGGATCGTAGCGTTTGTATCAAATACAAAGTGGGTCGTATCCATAGTGTCACCAGGATAAGGCACCCAGTCTTATCTCTATACTATAGACCCTTTAGGCCGTTTCTTGAACAATGATCCCATATGTCGCTACATATAGTTCAAGACTCATATTACAGCCTGGGATGTCTAGTTTATTGGATTAGGGTTATTTTTAGGCAAAAAACAAATATAAAATAACTAATAACATTTAATGGAAAAATATATCAATATTATTTCATTAATATCCGATCAACGGTTACATTCACTATCTACGAGTTTTAGGGCATAAAACCCAACAGAAGCTCCACAGAAGCTGAATACCGAGCCCTTGTTATGACAGCAGCAGACCTCTTCTGGGTTCGTCATCTGTTGCGAGATTTATGTGTCTTTACTACTTCGCCTCCTTTGATTTGGTGTGACAACCAATCTGCTATTCATCTTGCCAAAAATCCGGTCTTTCATGGCCGTACGAAGCACATTGAAGTAGATTTTCATTTCATTCGGGAACGTGTTGTTCGAAATGACATTCGGCTGCAGTATGTTTCAACACAGTCCCAACTTGCTGATATTTTTACCAAGTCTCTTACCACTGCTCGCTTCTCTCTGTTGTTGTCCAAACTTATGCCCTGATTGTTTTTCAGTGCTTTTCGTTTGAGGGAGGATATTGTATACTATTAA

mRNA sequence

ATGGCTTCTACTGCTACTCCTTCTCTCAAGGATCTTCATTCTCCAATTTTTCTATTAGCCAATATCTGCAACCTTATTTCAATCCGCTTGGATTCATCGAATTATGTTTTGTGGAAGTTTCAGTTTTCTTCCATGTTAAGGGCACATAAACTTTTTGGATTTGTTGATGGATCTACTCCTGCTCCATCAGAGACAATTTCGTCTTCTTCAACTGCTGAATCGCCTTCTGGAGGTTCTGTATCTACAGTCACTGTGAGTCCGAATCCTCTTGCTTTTCGTTTGAGGGAGGATATTGTATACTATTAA

Coding sequence (CDS)

ATGGCTTCTACTGCTACTCCTTCTCTCAAGGATCTTCATTCTCCAATTTTTCTATTAGCCAATATCTGCAACCTTATTTCAATCCGCTTGGATTCATCGAATTATGTTTTGTGGAAGTTTCAGTTTTCTTCCATGTTAAGGGCACATAAACTTTTTGGATTTGTTGATGGATCTACTCCTGCTCCATCAGAGACAATTTCGTCTTCTTCAACTGCTGAATCGCCTTCTGGAGGTTCTGTATCTACAGTCACTGTGAGTCCGAATCCTCTTGCTTTTCGTTTGAGGGAGGATATTGTATACTATTAA

Protein sequence

MASTATPSLKDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGSTPAPSETISSSSTAESPSGGSVSTVTVSPNPLAFRLREDIVYY
Homology
[Close]
BLAST of Lcy03g002820 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 50/88 (56.82%), Postives = 71/88 (80.68%), Query Frame = 0 

Query: 1   MASTATPSLKDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGSTP 60
           M S++T + KDLHSPIFLL+NICNL+SIRLDS++++LWKFQ +++L+AHKLFGF+DGS  
Sbjct: 22  MTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVS 81

Query: 61  APSETISSSSTAESPSGGSVSTVTVSPN 89
           APS+ ++SSS  ES    + S   ++P+
Sbjct: 82  APSQFLASSSETESQPTTTTSLPVINPH 109

[Close]
BLAST of Lcy03g002820 vs. ExPASy TrEMBL
Match: A0A5D3D3T6 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002980 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0 

Query: 2  ASTATPSLKDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGSTPA 61
          AS+++ + K+L SP+FLL NICNLISIRLDS+NY LWKFQF  ML+AHKL+GF+D S P 
Sbjct: 5  ASSSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKAHKLYGFIDESIPT 64

Query: 62 PSETISSSSTAESPSGGSVSTVTVS 87
          P +TIS+ +TA S    S +T T S
Sbjct: 65 PPKTISNPTTASS----SATTQTTS 85

[Close]
BLAST of Lcy03g002820 vs. ExPASy TrEMBL
Match: A0A6J1E049 (uncharacterized protein LOC111025150 OS=Momordica charantia OX=3673 GN=LOC111025150 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 45/68 (66.18%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 1  MASTATPSLKDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGSTP 60
          MA ++ P  KDL SPIFLL+NICNL+S+RLDSSN+VLWKFQ +++L+AHKL+GF+DGSTP
Sbjct: 1  MADSSQPP-KDLSSPIFLLSNICNLVSLRLDSSNFVLWKFQLTAILKAHKLYGFIDGSTP 60

Query: 61 APSETISS 69
           P+E + S
Sbjct: 61 KPAEFLVS 67

[Close]
BLAST of Lcy03g002820 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 0 

Query: 2   ASTATPSL---KDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGS 61
           +ST  PS    KD  SPIFLL+NICNLIS+RLDS+N+VLWKFQ +++L+AHKL+GF+DG+
Sbjct: 3   SSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGT 62

Query: 62  TPAPSETISSSSTAESPSGG---------------SVSTVTVSPNPLAF 93
            P P  T +SSST+  P                  +V   T+SP  LA+
Sbjct: 63  NPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAY 111

[Close]
BLAST of Lcy03g002820 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 0 

Query: 2   ASTATPSL---KDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGS 61
           +ST  PS    KD  SPIFLL+NICNLIS+RLDS+N+VLWKFQ +++L+AHKL+GF+DG+
Sbjct: 3   SSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGT 62

Query: 62  TPAPSETISSSSTAESPSGG---------------SVSTVTVSPNPLAF 93
            P P  T +SSST+  P                  +V   T+SP  LA+
Sbjct: 63  NPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAY 111

[Close]
BLAST of Lcy03g002820 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 104.8 bits (260), Expect = 4.6e-19
Identity = 50/88 (56.82%), Postives = 71/88 (80.68%), Query Frame = 0 

Query: 1   MASTATPSLKDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGSTP 60
           M S++T + KDLHSPIFLL+NICNL+SIRLDS++++LWKFQ +++L+AHKLFGF+DGS  
Sbjct: 22  MTSSSTNTKKDLHSPIFLLSNICNLVSIRLDSTDFILWKFQLTAILKAHKLFGFIDGSVS 81

Query: 61  APSETISSSSTAESPSGGSVSTVTVSPN 89
           APS+ ++SSS  ES    + S   ++P+
Sbjct: 82  APSQFLASSSETESQPTTTTSLPVINPH 109

[Close]
BLAST of Lcy03g002820 vs. NCBI nr
Match: TYK17989.1 (uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 5.6e-17
Identity = 51/85 (60.00%), Postives = 65/85 (76.47%), Query Frame = 0 

Query: 2  ASTATPSLKDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGSTPA 61
          AS+++ + K+L SP+FLL NICNLISIRLDS+NY LWKFQF  ML+AHKL+GF+D S P 
Sbjct: 5  ASSSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKAHKLYGFIDESIPT 64

Query: 62 PSETISSSSTAESPSGGSVSTVTVS 87
          P +TIS+ +TA S    S +T T S
Sbjct: 65 PPKTISNPTTASS----SATTQTTS 85

[Close]
BLAST of Lcy03g002820 vs. NCBI nr
Match: XP_022158689.1 (uncharacterized protein LOC111025150 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 45/68 (66.18%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 1  MASTATPSLKDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGSTP 60
          MA ++ P  KDL SPIFLL+NICNL+S+RLDSSN+VLWKFQ +++L+AHKL+GF+DGSTP
Sbjct: 1  MADSSQPP-KDLSSPIFLLSNICNLVSLRLDSSNFVLWKFQLTAILKAHKLYGFIDGSTP 60

Query: 61 APSETISS 69
           P+E + S
Sbjct: 61 KPAEFLVS 67

[Close]
BLAST of Lcy03g002820 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-15
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 0 

Query: 2   ASTATPSL---KDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGS 61
           +ST  PS    KD  SPIFLL+NICNLIS+RLDS+N+VLWKFQ +++L+AHKL+GF+DG+
Sbjct: 3   SSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGT 62

Query: 62  TPAPSETISSSSTAESPSGG---------------SVSTVTVSPNPLAF 93
            P P  T +SSST+  P                  +V   T+SP  LA+
Sbjct: 63  NPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAY 111

[Close]
BLAST of Lcy03g002820 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-15
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 0 

Query: 2   ASTATPSL---KDLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGS 61
           +ST  PS    KD  SPIFLL+NICNLIS+RLDS+N+VLWKFQ +++L+AHKL+GF+DG+
Sbjct: 3   SSTTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGT 62

Query: 62  TPAPSETISSSSTAESPSGG---------------SVSTVTVSPNPLAF 93
            P P  T +SSST+  P                  +V   T+SP  LA+
Sbjct: 63  NPCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAY 111

[Close]
BLAST of Lcy03g002820 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 6.8e-05
Identity = 21/52 (40.38%), Postives = 29/52 (55.77%), Query Frame = 0 

Query: 11 DLHSPIFLLANICNLISIRLDSSNYVLWKFQFSSMLRAHKLFGFVDGSTPAP 63
          D+H P     +  ++  +  D  NYV WK +F S LR  K FGF+DG+ P P
Sbjct: 23 DIHHP-----SDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKP 69

The following BLAST results are available for this feature:
BLAST of Lcy03g002820 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g002820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D9L62.2e-1956.82uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A5D3D3T62.7e-1760.00Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A6J1E0491.0e-1666.18uncharacterized protein LOC111025150 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5D3CLI61.9e-1548.62T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=... [more]
A0A1S3BI581.9e-1548.62uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Lcy03g002820 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150845.14.6e-1956.82uncharacterized protein LOC111018892 [Momordica charantia][more]
TYK17989.15.6e-1760.00uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa][more]
XP_022158689.12.1e-1666.18uncharacterized protein LOC111025150 [Momordica charantia][more]
XP_008448007.14.0e-1548.62PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo][more]
XP_008448008.14.0e-1548.62PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo][more]
BLAST of Lcy03g002820 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G21280.16.8e-0540.38CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 24..62
e-value: 7.9E-12
score: 44.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g002820.1Lcy03g002820.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding