Lcy03g001570 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g001570
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Gag protease polyprotein
Location	Chr03: 5297565 .. 5297915 (-)
RNA-Seq Expression	Lcy03g001570
Synteny	Lcy03g001570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGTGGCGCAATATGTTAGAAGATTCGAGGAGTTGTCTTGCCGTGTCCTGGAGTTGGTCGCCACCGAGGCAAGCAGGATCAACCGGTTCATTAATGGCCTGCGTGCAGAAATCAGAGGGTTGGTCAGGCTAGGTCGACCAGCCACTTTCGCAGCAGCTCTTACGAGCGCGCGGATGCTGGATGTTGACATCCCTAGGGCGGAGCAATTTTAGGAAGTGGGCACGTCGTCTGGTGCCAAGAGGAAGCATGAAGAGTTAGTGCCTGCACCTAGTTAGAAGGTCAGAAGGTCTCTGCCAGGGACCAGTGGGTGCTTGTGGAGCTTGGTGCAAGTGTCGCCTTGTTGGTAA

mRNA sequence

ATGACCGTGGCGCAATATGTTAGAAGATTCGAGGAGTTGTCTTGCCGTGTCCTGGAGTTGGTCGCCACCGAGGCAAGCAGGATCAACCGGTTCATTAATGGCCTGCGTGCAGAAATCAGAGGGTTGGTCAGGCTAGGTCGACCAGCCACTTTCGCAGCAGCTCTTACGAGCGCGCGGATGCTGGATGTTGACATCCCTAGGGCGGAGCAATTTTAGGAAGTGGGCACGTCGTCTGGTGCCAAGAGGAAGCATGAAGAGTTAGTGCCTGCACCTAGTTAGAAGGTCAGAAGGTCTCTGCCAGGGACCAGTGGGTGCTTGTGGAGCTTGGTGCAAGTGTCGCCTTGTTGGTAA

Coding sequence (CDS)

ATGACCGTGGCGCAATATGTTAGAAGATTCGAGGAGTTGTCTTGCCGTGTCCTGGAGTTGGTCGCCACCGAGGCAAGCAGGATCAACCGGTTCATTAATGGCCTGCGTGCAGAAATCAGAGGGTTGGTCAGGCTAGGTCGACCAGCCACTTTCGCAGCAGCTCTTACGAGCGCGCGGATGCTGGATGTTGACATCCCTAGGGCGGAGCAATTTTAG

Protein sequence

MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARMLDVDIPRAEQF

Homology

[Close]

BLAST of Lcy03g001570 vs. ExPASy TrEMBL
Match: A0A6J1DYU5 (uncharacterized protein LOC111025517 OS=Momordica charantia OX=3673 GN=LOC111025517 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARM 60
           +TVAQY R+F ELSC   EL+ TEA +I RF+ GLR  IRG V L RPAT+A A+    +
Sbjct: 74  LTVAQYERKFTELSCFARELIPTEAMKIKRFVKGLRKGIRGPVDLQRPATYAEAVRGTLI 133

Query: 61  LDVDIPRAEQ 71
           +D D+  + Q
Sbjct: 134 MDNDVSNSVQ 143

[Close]

BLAST of Lcy03g001570 vs. ExPASy TrEMBL
Match: A0A6J1DQJ4 (uncharacterized protein LOC111022885 OS=Momordica charantia OX=3673 GN=LOC111022885 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 1   MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARM 60
           +TVAQY R+F ELS    EL+ TEA +I RF+ GLR  IRG V L RPAT+A A+  A +
Sbjct: 58  LTVAQYERKFTELSRFARELIPTEAMKIKRFVKGLRKRIRGPVDLQRPATYAEAVRGALI 117

Query: 61  LDVDIPRAEQ 71
           +D D+    Q
Sbjct: 118 MDKDVSNRVQ 127

[Close]

BLAST of Lcy03g001570 vs. ExPASy TrEMBL
Match: A0A6J1DUM2 (uncharacterized protein LOC111023247 OS=Momordica charantia OX=3673 GN=LOC111023247 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1   MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARM 60
           ++VAQY R+F ELS   LEL+ TEA +I RF+ GLR  IRG V L RP T+A A+  A +
Sbjct: 147 LSVAQYERKFTELSRFALELIPTEALKIKRFVKGLRKGIRGPVDLQRPTTYAEAVRGALV 206

Query: 61  LDVDI 66
           +D D+
Sbjct: 207 MDKDV 211

[Close]

BLAST of Lcy03g001570 vs. ExPASy TrEMBL
Match: A0A6J1DVA0 (uncharacterized protein LOC111023424 OS=Momordica charantia OX=3673 GN=LOC111023424 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1   MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARM 60
           +TVAQY R+F ELS   LEL+ TEA +I RF+ GL   IRG V L RP T+A A+    +
Sbjct: 184 LTVAQYERKFTELSSFALELIPTEAMKIKRFVKGLHKGIRGSVDLQRPVTYAEAVRGTLI 243

Query: 61  LDVDIPRAEQ 71
           +D D+    Q
Sbjct: 244 MDKDVSNRVQ 253

[Close]

BLAST of Lcy03g001570 vs. ExPASy TrEMBL
Match: A0A6J1DUN2 (uncharacterized protein LOC111023627 OS=Momordica charantia OX=3673 GN=LOC111023627 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.9e-07
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARM 60
          MTV QY ++F ELS   L+L+ TE  +I RF+ GLR  IRG V L RP T+A A+    +
Sbjct: 1  MTVTQYEKKFTELSHFALDLIPTEEKKIKRFVKGLRKGIRGQVNLQRPTTYAEAIWGVLV 60

Query: 61 LDVDI 66
          +D D+
Sbjct: 61 MDKDV 65

[Close]

BLAST of Lcy03g001570 vs. NCBI nr
Match: XP_022159077.1 (uncharacterized protein LOC111025517 [Momordica charantia])

HSP 1 Score: 70.1 bits (170), Expect = 8.8e-09
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1   MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARM 60
           +TVAQY R+F ELSC   EL+ TEA +I RF+ GLR  IRG V L RPAT+A A+    +
Sbjct: 74  LTVAQYERKFTELSCFARELIPTEAMKIKRFVKGLRKGIRGPVDLQRPATYAEAVRGTLI 133

Query: 61  LDVDIPRAEQ 71
           +D D+  + Q
Sbjct: 134 MDNDVSNSVQ 143

[Close]

BLAST of Lcy03g001570 vs. NCBI nr
Match: XP_022155872.1 (uncharacterized protein LOC111022885 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 5.7e-08
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 1   MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARM 60
           +TVAQY R+F ELS    EL+ TEA +I RF+ GLR  IRG V L RPAT+A A+  A +
Sbjct: 58  LTVAQYERKFTELSRFARELIPTEAMKIKRFVKGLRKRIRGPVDLQRPATYAEAVRGALI 117

Query: 61  LDVDIPRAEQ 71
           +D D+    Q
Sbjct: 118 MDKDVSNRVQ 127

[Close]

BLAST of Lcy03g001570 vs. NCBI nr
Match: XP_022156326.1 (uncharacterized protein LOC111023247 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1   MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARM 60
           ++VAQY R+F ELS   LEL+ TEA +I RF+ GLR  IRG V L RP T+A A+  A +
Sbjct: 147 LSVAQYERKFTELSRFALELIPTEALKIKRFVKGLRKGIRGPVDLQRPTTYAEAVRGALV 206

Query: 61  LDVDI 66
           +D D+
Sbjct: 207 MDKDV 211

[Close]

BLAST of Lcy03g001570 vs. NCBI nr
Match: XP_022156546.1 (uncharacterized protein LOC111023424 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 2.8e-07
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1   MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARM 60
           +TVAQY R+F ELS   LEL+ TEA +I RF+ GL   IRG V L RP T+A A+    +
Sbjct: 184 LTVAQYERKFTELSSFALELIPTEAMKIKRFVKGLHKGIRGSVDLQRPVTYAEAVRGTLI 243

Query: 61  LDVDIPRAEQ 71
           +D D+    Q
Sbjct: 244 MDKDVSNRVQ 253

[Close]

BLAST of Lcy03g001570 vs. NCBI nr
Match: XP_022156794.1 (uncharacterized protein LOC111023627 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-06
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MTVAQYVRRFEELSCRVLELVATEASRINRFINGLRAEIRGLVRLGRPATFAAALTSARM 60
          MTV QY ++F ELS   L+L+ TE  +I RF+ GLR  IRG V L RP T+A A+    +
Sbjct: 1  MTVTQYEKKFTELSHFALDLIPTEEKKIKRFVKGLRKGIRGQVNLQRPTTYAEAIWGVLV 60

Query: 61 LDVDI 66
          +D D+
Sbjct: 61 MDKDV 65

The following BLAST results are available for this feature:

BLAST of Lcy03g001570 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g001570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DYU5	4.2e-09	51.43	uncharacterized protein LOC111025517 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DQJ4	2.8e-08	51.43	uncharacterized protein LOC111022885 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DUM2	1.4e-07	52.31	uncharacterized protein LOC111023247 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DVA0	1.4e-07	48.57	uncharacterized protein LOC111023424 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DUN2	8.9e-07	47.69	uncharacterized protein LOC111023627 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Lcy03g001570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159077.1	8.8e-09	51.43	uncharacterized protein LOC111025517 [Momordica charantia]	[more]
XP_022155872.1	5.7e-08	51.43	uncharacterized protein LOC111022885 [Momordica charantia]	[more]
XP_022156326.1	2.8e-07	52.31	uncharacterized protein LOC111023247 [Momordica charantia]	[more]
XP_022156546.1	2.8e-07	48.57	uncharacterized protein LOC111023424 [Momordica charantia]	[more]
XP_022156794.1	1.8e-06	47.69	uncharacterized protein LOC111023627 [Momordica charantia]	[more]

BLAST of Lcy03g001570 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 1..36 e-value: 1.6E-5 score: 25.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g001570.1	Lcy03g001570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0016740	transferase activity