Lcy03g000460 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g000460
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	zinc finger CCCH domain-containing protein 3
Location	Chr03: 1397205 .. 1399997 (+)
RNA-Seq Expression	Lcy03g000460
Synteny	Lcy03g000460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTGGGAAAATATTACTGCGACTACTGCGAGAAACAGTTCCAAGACACTCCTTTTGCTCGAAAACGCCATCTTCAAAGCCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAGAGGTCCTCCATCTCTCTGCTTTCTCCTTTTCCCCTCATTTCCTCTTCCTCGCTCATTCTTCCTTTTCATTGCAGACCCTAATCAAGCTTTCTCTGATGGCTTCGGACGAGGCGTCTGTAATCGATTCGTCAGAACGGTATTCTTATTCGCATTTGTTTTAAAACCTAATTTTTTATTTTATTTTCTGGCTCACTCTGCAATTATATACTTTGTTCGCTTTGATTTCGAAGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAAGAACATCCCGCTGAACTCGAGTTCGCACCCGTTTGCAGGTAGGGCAACTACCTTTAGTATTTACTTTGATCGATATCCTATCTGATTCAAAATCAAAATCACAGGTTTCCCGGAAAATAATCAAGCCCCAAATATTCAGGTGAATCGATTCCTCGAGGGCAATTCTTTGACAGGTAACTTGAAGTGAACTTGTTGCTGCTAGTTTAGATTGTTGAAACCATCAGACAGCTTTATGTGTTCCATATTTTATTTGTATATCTATACAAATGCTGTTGTTGGTAAAAATTGGAATTGATGTTTACATAATTCCTATCCAGTCATAGGAATGATCAATTCCTTGCATTCCTCTTCCATTGATCCTTCTACTTTTACACAGTGCTTGTTATGAATCTGCAAGTCGTTGAGTTTTCAACAGCATTCATCATTGTTTATGAATCTGCAAGTCGTTGAGTTTTCAACAGCATTCATCATTGTTTATGAATTTGCAAATCATTATGAGTTCTATCTCGAATCATTTGTTCAAGGATTTGAGGTCACTTAAATCTTTCATAGTTTTCGACTTTCTTTTGCTTACATTTGATCATTCTTATTTTCAGGTAATTTAGTTAGCGATAGAATGGGAACATCATGGGGCAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGATATCCACATCTCCCTTTTGTAGATTGGGGATAATCCACGAATATTAGTTATTGGTACAAGTCTCCTCTGCATCTCCTGTTTATGTCCTACTTGTGCAGCATTTTGTAAAAATGTGATATCTATACTATAACAGCCAGACAAATTAGCTTTTCTTTGATTTCATTTTGGTTACGATATTCAACCCTTAAGTGTTATAAACTCCATCAATGTTAAAGTATTTAGTTGAACATGTTATAATTCAAGTTGTGATGTGTCTGAGTTTATGGTGCTCTAAACTAGTTGAGATCATCATGATCGAAGACAAGAAGTAAGAGGAGAGTTGATAAAGCAAATAAGCAAACACCTGATTCTGAACTCTTTTCACTAGCAAACTGAACTTTTCATTCATAAACCAGGCATGAGAGGCTCCAAATGTTATTGATCTCGACGAGTAGCCGAAATCTTCTTAAGATAAGTATGAAGAACATATGAATGCATGTTTCTAAGTACATACATTAGCCCTTAAACAATATTATTATTTATTTTATTCAAGCATCTTGACAAACAAGCATCACCCCAATACATCCTCCTATACATTGGTTGCCTAATAACTTGAAGACGCAAGCACCTCTAACAAGGAAGCAATAAATTGCATCTGGGTCTCTTCATCTATAGTTAAGAAGAGAGGGACGTGAACAAATAGAGATTTGATGCTGTTCTCTTCGGCGTAGCGGAGGGAATGATAGTAGACATAATTGCACACGAAGCGACCAGCATCATCGGAAGTCATCACTTCATATCCCTTCTTTGCCAATGTCTTGGTTATTTCCTCCACTGGAAGAGAAGTCTGCAGAGGAGAGTTGGGTAAGAAATCAGGAAATAAGAAAAGACATTCATGATTTAAGGTTATGCCATCTCCAAGTGTATAAGCAATGAAAATTTAGCTATAAATTTTGCAATCTTGATTAAATCCAATTCGTTACAATGATTCGATGTTGTACCAACTTCAAAAGCACGAACACAGAACACACAACAGGGAGACAATGAGATGTCATACATTTCAACATTTTCACGTATGTATGCTTTTAGTTAATGATATTTGCAAGTGAAAGACGTAATGAAATAGGCAATACTGAAGAAATTAAACAAATAGATGACGTATTTCTCAAATAAACAAACATTATTCTAAATGACTTGATATTTTATTAAAAAGAAATTCCAATTCAATGTTAACACATTTTTGACAAAGATCAAAGAATTTAATGTTCAATATGTGTGAGACATGGACATATAACCCTAACCTAAGTGTTCATGCTCCATAGGTGCCAACAAATTACCCTCAAGTTTTAGCAGATGCTGATATCTTAAAAACGTATATATTTTCTAAAAGAGAAGCAAATCCTGGTTCTGAACGCTTAAAAGCAGCTTAAGCAAGAAGGCATTTCCTAAAGTTCAAATATAATCAGAAAAGTGGCCTAAAAAAGACATGAAAATGGTTTCTTAATGGCAGTATATTTGGTCAAAAATTTCAAGATGAAATTTCATGATCATTTTACCTCTCTTGTACGTAAAATTTCACCGTCCTCGAGAACAATTGGTACTCTCTGCAGCAGATGAAACAAATAACTAATGATCAAACTCACAGCAAAATAAATGCTCAAGCAAAGTAAACTCCACAAGACTAGGAGATGGTAACACATTGAGCGAGTTATCTACCTGAGGTTTCCATCCCATTTCAT

mRNA sequence

ATGCCACTGGGAAAATATTACTGCGACTACTGCGAGAAACAGTTCCAAGACACTCCTTTTGCTCGAAAACGCCATCTTCAAAGCCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAGAGACCCTAATCAAGCTTTCTCTGATGGCTTCGGACGAGGCGTCTGTAATCGATTCGTCAGAACGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAAGAACATCCCGCTGAACTCGAGTTCGCACCCGTTTGCAGGTTTCCCGGAAAATAATCAAGCCCCAAATATTCAGGTGAATCGATTCCTCGAGGGCAATTCTTTGACAGGTAATTTAGTTAGCGATAGAATGGGAACATCATGGGGCAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGATATCCACATCTCCCTTTTGTAGATTGGGGATAATCCACGAATATTAGTTATTGGTACAAGTCTCCTCTGCATCTCCTGTTTATGTCCTACTTGTGCAGCATTTTGTAAAAATGTGATATCTATACTATAACAGCCAGACAAATTAGCTTTTCTTTGATTTCATTTTGGTTACGATATTCAACCCTTAAGTGTTATAAACTCCATCAATGTTAAAGTATTTAGTTGAACATGTTATAATTCAAGTTGTGATGTGTCTGAGTTTATGGTGCTCTAAACTAGTTGAGATCATCATGATCGAAGACAAGAAGTAAGAGGAGAGTTGATAAAGCAAATAAGCAAACACCTGATTCTGAACTCTTTTCACTAGCAAACTGAACTTTTCATTCATAAACCAGGCATGAGAGGCTCCAAATGTTATTGATCTCGACGAGTAGCCGAAATCTTCTTAAGATAAGTATGAAGAACATATGAATGCATGTTTCTAAGTACATACATTAGCCCTTAAACAATATTATTATTTATTTTATTCAAGCATCTTGACAAACAAGCATCACCCCAATACATCCTCCTATACATTGGTTGCCTAATAACTTGAAGACGCAAGCACCTCTAACAAGGAAGCAATAAATTGCATCTGGGTCTCTTCATCTATAGTTAAGAAGAGAGGGACGTGAACAAATAGAGATTTGATGCTGTTCTCTTCGGCGTAGCGGAGGGAATGATAGTAGACATAATTGCACACGAAGCGACCAGCATCATCGGAAGTCATCACTTCATATCCCTTCTTTGCCAATGTCTTGGTTATTTCCTCCACTGGAAGAGAAGTCTGCAGAGGAGAGTTGGGTAAGAAATCAGGAAATAAGAAAAGACATTCATGATTTAAGGTTATGCCATCTCCAAGTGTATAAGCAATGAAAATTTAGCTATAAATTTTGCAATCTTGATTAAATCCAATTCGTTACAATGATTCGATGTTGTACCAACTTCAAAAGCACGAACACAGAACACACAACAGGGAGACAATGAGATGTCATACATTTCAACATTTTCACGTATGTATGCTTTTAGTTAATGATATTTGCAAGTGAAAGACGTAATGAAATAGGCAATACTGAAGAAATTAAACAAATAGATGACGTATTTCTCAAATAAACAAACATTATTCTAAATGACTTGATATTTTATTAAAAAGAAATTCCAATTCAATGTTAACACATTTTTGACAAAGATCAAAGAATTTAATGTTCAATATGTGTGAGACATGGACATATAACCCTAACCTAAGTGTTCATGCTCCATAGGTGCCAACAAATTACCCTCAAGTTTTAGCAGATGCTGATATCTTAAAAACGTATATATTTTCTAAAAGAGAAGCAAATCCTGGTTCTGAACGCTTAAAAGCAGCTTAAGCAAGAAGGCATTTCCTAAAGTTCAAATATAATCAGAAAAGTGGCCTAAAAAAGACATGAAAATGGTTTCTTAATGGCAGTATATTTGGTCAAAAATTTCAAGATGAAATTTCATGATCATTTTACCTCTCTTGTACGTAAAATTTCACCGTCCTCGAGAACAATTGGTACTCTCTGCAGCAGATGAAACAAATAACTAATGATCAAACTCACAGCAAAATAAATGCTCAAGCAAAGTAAACTCCACAAGACTAGGAGATGGTAACACATTGAGCGAGTTATCTACCTGAGGTTTCCATCCCATTTCAT

Coding sequence (CDS)

ATGCCACTGGGAAAATATTACTGCGACTACTGCGAGAAACAGTTCCAAGACACTCCTTTTGCTCGAAAACGCCATCTTCAAAGCCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAGAGACCCTAATCAAGCTTTCTCTGATGGCTTCGGACGAGGCGTCTGTAATCGATTCGTCAGAACGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAAGAACATCCCGCTGAACTCGAGTTCGCACCCGTTTGCAGGTTTCCCGGAAAATAATCAAGCCCCAAATATTCAGGTGAATCGATTCCTCGAGGGCAATTCTTTGACAGGTAATTTAGTTAGCGATAGAATGGGAACATCATGGGGCAATTTACCTCCATCATTGATGCCTCCTCCAGAGGGTGGATATCCACATCTCCCTTTTGTAGATTGGGGATAA

Protein sequence

MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNRFVRTGFCQYGDSCKYFHPKNIPLNSSSHPFAGFPENNQAPNIQVNRFLEGNSLTGNLVSDRMGTSWGNLPPSLMPPPEGGYPHLPFVDWG

Homology

[Close]

BLAST of Lcy03g000460 vs. ExPASy Swiss-Prot
Match: Q0JP11 (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 171.8 bits (434), Expect = 5.9e-42
Identity = 90/172 (52.33%), Postives = 106/172 (61.63%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGR----- 60
           MPLGKYYCDYCEKQFQDTP ARKRHL    H +A+ALW+D+ R   Q    G G      
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVR--RQELHGGGGGAPPLL 60

Query: 61  --------GVCNRFVRTGFCQYGDSCKYFHPKNIPLN---SSSHPFAGFPENNQA----- 120
                   GVC  FVRTG C++GDSC+YFHPK  P N   + S P +G P   Q+     
Sbjct: 61  HQPGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSG-PMAQQSNIQGS 120

Query: 121 -PNIQVNRFLEGNSLTGNLVSDRMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
            PN    +  +G+S +GN++     TSWGNLPPSL PPPEGGYP  PFVDWG
Sbjct: 121 QPNFVGYQAADGSSFSGNILGGH--TSWGNLPPSLRPPPEGGYPPFPFVDWG 167

[Close]

BLAST of Lcy03g000460 vs. ExPASy Swiss-Prot
Match: Q6AXL8 (Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 53/170 (31.18%), Postives = 77/170 (45.29%), Query Frame = 0


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNRFVRT 64
           +YYCDYC++ FQD    RK+HL  + H +AK  WFD+FRD     +D   + VC +FV+T
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAATLLNDERSKEVCRKFVQT 63

Query: 65  GFCQYGDSCKYFHPKNIPLNSSSHPF------AGFPENNQAPNIQVNRFL---------- 124
           G C +G SC++ H     +                P+ + +    V+ +L          
Sbjct: 64  GQCVFGTSCRFSHMSEKQMKMLEQKIDDEKRQKEDPDQDGSSERSVDEWLSRREKKLAAL 123

Query: 125 --------EGNSLTGNLVSDRMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
                   E    T N+       S  +LPPSL PPP GG+      +WG
Sbjct: 124 TSGRVLRMEEEECTENIEIPPYLLSIPDLPPSLHPPPAGGWRVTVHNEWG 173

[Close]

BLAST of Lcy03g000460 vs. ExPASy Swiss-Prot
Match: Q2TA39 (Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.8e-18
Identity = 56/170 (32.94%), Postives = 76/170 (44.71%), Query Frame = 0


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNRFVRT 64
           +Y+CDYC++ FQD    RK+HL  L H KAK LW+D FRD      D   +  C +F+ T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 65  GFCQYGDSCKYFHPKNIPLNSSSHPFAGFPENNQA----------PNIQVNRFLEGNS-L 124
           G C +G +C++ H     L   S       E  +A          P + +  +LE  +  
Sbjct: 64  GQCDFGSNCRFSHMSERDLQELS---VQVEEERRAREWPLDVAELPEVCLEDWLEKRAKR 123

Query: 125 TGNLVSDR----------MGTSW---GNLPPSLMPPPEGGYPHLPFVDWG 151
             +  S R              W     LPPSL  PP GG+P  P V WG
Sbjct: 124 LSSAPSSRAEPVRATVFQYPVGWPPVQELPPSLRAPPPGGWPLQPSVQWG 170

[Close]

BLAST of Lcy03g000460 vs. ExPASy Swiss-Prot
Match: Q9UDW3 (Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-17
Identity = 52/167 (31.14%), Postives = 75/167 (44.91%), Query Frame = 0


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNRFVRT 64
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D FRD      D   +  C +F+ T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 65  GFCQYGDSCKYFHPK-------NIPLNSSSHPFAGFPENNQAPNIQVNRFLEGNS-LTGN 124
           G C +G +C++ H         +I +           +  + P   +  +LE  +    +
Sbjct: 64  GQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSS 123

Query: 125 LVSDR----------MGTSW---GNLPPSLMPPPEGGYPHLPFVDWG 151
             S R              W     LPPSL  PP GG+P  P V WG
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG 170

[Close]

BLAST of Lcy03g000460 vs. ExPASy Swiss-Prot
Match: Q9CQR5 (Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-16
Identity = 54/167 (32.34%), Postives = 75/167 (44.91%), Query Frame = 0


Query: 5   KYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNRFVRT 64
           +Y+CDYC++ FQD    RK+HL  L H KAK +W+D FRD      D   +  C +F+ T
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLT 63

Query: 65  GFCQYGDSCKYFHPKNIPLNSSS------HPFAGFP-ENNQAPNIQVNRFLEGNS-LTGN 124
           G C +G +C++ H     L   S           +P E  + P   +  +LE  +    +
Sbjct: 64  GQCDFGSNCRFSHMSEQDLQELSVQVEEERRAREWPLETAELPEGHLEDWLEKRAKRLSS 123

Query: 125 LVSDR----------MGTSW---GNLPPSLMPPPEGGYPHLPFVDWG 151
             S R              W     LPPSL  PP GG+  L  V WG
Sbjct: 124 APSSRAEPIRTTVFQYPVGWPPMQELPPSLRAPPPGGWSVLSKVQWG 170

[Close]

BLAST of Lcy03g000460 vs. ExPASy TrEMBL
Match: A0A6J1DWZ9 (zinc finger CCCH domain-containing protein 3 OS=Momordica charantia OX=3673 GN=LOC111025216 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.0e-76
Identity = 135/151 (89.40%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR 60
           MPLGKYYCDYCEKQFQDTPFARKRHL SLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLHSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR 60

Query: 61  FVRTGFCQYGDSCKYFHPKNIPLNSSSHPFAGFPE-NNQAPNIQVNRFLEGNSLTGNLVS 120
           FVRTGFCQYGDSCKYFHPKN P NSS+ P AGFPE +NQA NI VN+F+EG+SLTGNLVS
Sbjct: 61  FVRTGFCQYGDSCKYFHPKNNPQNSSTQPIAGFPEYSNQASNIPVNQFVEGSSLTGNLVS 120

Query: 121 DRMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           +RMGTSWGNLPPSLMPPPEGGYP LP VDWG
Sbjct: 121 NRMGTSWGNLPPSLMPPPEGGYPPLPIVDWG 151

[Close]

BLAST of Lcy03g000460 vs. ExPASy TrEMBL
Match: A0A6J1JFY8 (zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486532 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.6e-69
Identity = 125/150 (83.33%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR 60
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRD NQ FSD FG  VCNR
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNR 60

Query: 61  FVRTGFCQYGDSCKYFHPKNIPLNSSSHPFAGFPENNQAPNIQVNRFLEGNSLTGNLVSD 120
           F+ TGFCQYGDSCKYFH KN    SSS P AGFPENNQAPN+ VN+F+EG+SLTG+L  D
Sbjct: 61  FLTTGFCQYGDSCKYFHSKNNLQYSSSQPIAGFPENNQAPNVPVNQFMEGSSLTGSL--D 120

Query: 121 RMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           R+ TSWGNLPPSLMPPPEGGYP LPFVDWG
Sbjct: 121 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of Lcy03g000460 vs. ExPASy TrEMBL
Match: A0A6J1EU59 (zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111437782 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.2e-67
Identity = 121/150 (80.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR 60
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSH KAKALWFDSFRD NQ  S  F   +CNR
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 60

Query: 61  FVRTGFCQYGDSCKYFHPKNIPLNSSSHPFAGFPENNQAPNIQVNRFLEGNSLTGNLVSD 120
           F+ TGFCQYGDSC YFH  N P  SSSHP AGFPENNQAPNI VN+F+EG+SLTG+L  D
Sbjct: 61  FLTTGFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGSL--D 120

Query: 121 RMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           R+ TSWGNLPPSLMPPPEGGYP LPFVDWG
Sbjct: 121 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of Lcy03g000460 vs. ExPASy TrEMBL
Match: A0A5D3CFN3 (Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004580 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 124/157 (78.98%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAF--SDGFGRGVC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+D NQ F  S  F   +C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFVRTGFCQYGDSCKYFHPKN----IPLNSSSHPFAGFPENNQAPNIQVNRFLEGN-SL 120
           NRF+ TGFCQYGDSCKYFHPKN       NSSSHP AGFPENNQ PN+  NRF++GN S 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGNLVSDRMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           TG+LVSDR+GTSWGNLPPSLMPPPEGGYP LPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of Lcy03g000460 vs. ExPASy TrEMBL
Match: A0A1S3BQ25 (zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103492103 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 5.5e-67
Identity = 124/157 (78.98%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAF--SDGFGRGVC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+D NQ F  S  F   +C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFVRTGFCQYGDSCKYFHPKN----IPLNSSSHPFAGFPENNQAPNIQVNRFLEGN-SL 120
           NRF+ TGFCQYGDSCKYFHPKN       NSSSHP AGFPENNQ PN+  NRF++GN S 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGNLVSDRMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           TG+LVSDR+GTSWGNLPPSLMPPPEGGYP LPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of Lcy03g000460 vs. NCBI nr
Match: XP_022158753.1 (zinc finger CCCH domain-containing protein 3 [Momordica charantia])

HSP 1 Score: 295.8 bits (756), Expect = 2.1e-76
Identity = 135/151 (89.40%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR 60
           MPLGKYYCDYCEKQFQDTPFARKRHL SLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLHSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR 60

Query: 61  FVRTGFCQYGDSCKYFHPKNIPLNSSSHPFAGFPE-NNQAPNIQVNRFLEGNSLTGNLVS 120
           FVRTGFCQYGDSCKYFHPKN P NSS+ P AGFPE +NQA NI VN+F+EG+SLTGNLVS
Sbjct: 61  FVRTGFCQYGDSCKYFHPKNNPQNSSTQPIAGFPEYSNQASNIPVNQFVEGSSLTGNLVS 120

Query: 121 DRMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           +RMGTSWGNLPPSLMPPPEGGYP LP VDWG
Sbjct: 121 NRMGTSWGNLPPSLMPPPEGGYPPLPIVDWG 151

[Close]

BLAST of Lcy03g000460 vs. NCBI nr
Match: XP_022989487.1 (zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_022989488.1 zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 125/150 (83.33%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR 60
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRD NQ FSD FG  VCNR
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDSNQPFSDAFGTRVCNR 60

Query: 61  FVRTGFCQYGDSCKYFHPKNIPLNSSSHPFAGFPENNQAPNIQVNRFLEGNSLTGNLVSD 120
           F+ TGFCQYGDSCKYFH KN    SSS P AGFPENNQAPN+ VN+F+EG+SLTG+L  D
Sbjct: 61  FLTTGFCQYGDSCKYFHSKNNLQYSSSQPIAGFPENNQAPNVPVNQFMEGSSLTGSL--D 120

Query: 121 RMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           R+ TSWGNLPPSLMPPPEGGYP LPFVDWG
Sbjct: 121 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of Lcy03g000460 vs. NCBI nr
Match: XP_022931617.1 (zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618.1 zinc finger CCCH domain-containing protein 3 [Cucurbita moschata])

HSP 1 Score: 264.2 bits (674), Expect = 6.7e-67
Identity = 121/150 (80.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR 60
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSH KAKALWFDSFRD NQ  S  F   +CNR
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFRDSNQPLSHAFPTRLCNR 60

Query: 61  FVRTGFCQYGDSCKYFHPKNIPLNSSSHPFAGFPENNQAPNIQVNRFLEGNSLTGNLVSD 120
           F+ TGFCQYGDSC YFH  N P  SSSHP AGFPENNQAPNI VN+F+EG+SLTG+L  D
Sbjct: 61  FLTTGFCQYGDSCNYFHSNNNPQYSSSHPIAGFPENNQAPNIPVNQFMEGSSLTGSL--D 120

Query: 121 RMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           R+ TSWGNLPPSLMPPPEGGYP LPFVDWG
Sbjct: 121 RLRTSWGNLPPSLMPPPEGGYPPLPFVDWG 148

[Close]

BLAST of Lcy03g000460 vs. NCBI nr
Match: XP_008450521.1 (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA0050958.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa] >TYK10305.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 124/157 (78.98%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAF--SDGFGRGVC 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+D NQ F  S  F   +C
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDSNQTFPHSFHFRPRIC 60

Query: 61  NRFVRTGFCQYGDSCKYFHPKN----IPLNSSSHPFAGFPENNQAPNIQVNRFLEGN-SL 120
           NRF+ TGFCQYGDSCKYFHPKN       NSSSHP AGFPENNQ PN+  NRF++GN S 
Sbjct: 61  NRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSSHPIAGFPENNQPPNVPFNRFVDGNSSS 120

Query: 121 TGNLVSDRMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           TG+LVSDR+GTSWGNLPPSLMPPPEGGYP LPFVDWG
Sbjct: 121 TGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG 157

[Close]

BLAST of Lcy03g000460 vs. NCBI nr
Match: XP_038879279.1 (zinc finger CCCH domain-containing protein 3 [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 122/156 (78.21%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDPNQAFSDGFGRGVCNR 60
           MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSF+DPNQ     F  G CNR
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFKDPNQPLFHAFRPGFCNR 60

Query: 61  FVRTGFCQYGDSCKYFHP-----KNIPLNSSSHPFAGFPENNQAPNIQVNRFLEGNSLTG 120
           F+ TGFCQYGDSCKYFHP      N   NS+SHP AGFPENNQ PN  VN+F +G+S TG
Sbjct: 61  FLTTGFCQYGDSCKYFHPNNNYNNNNTHNSTSHPIAGFPENNQPPNFPVNQFADGSSFTG 120

Query: 121 NLVSDRMG-TSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           +LVSD MG TSWGNLPPSLMPPPEGGYP LPFVDWG
Sbjct: 121 SLVSDSMGRTSWGNLPPSLMPPPEGGYPPLPFVDWG 156

[Close]

BLAST of Lcy03g000460 vs. TAIR 10
Match: AT5G26749.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 168.3 bits (425), Expect = 4.7e-42
Identity = 82/153 (53.59%), Postives = 102/153 (66.67%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDP--NQAFSDGFGRGVC 60
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+ S      N   S+   +G+C
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 61  NRFVRTGFCQYGDSCKYFHPKNIPLNSSSHPFAGFPENNQAPNIQVN-RFLEGNSLTGNL 120
           NRF+ + FC +GDSC+YFHP N   N+ S    GF  N Q     +N + ++G++L  + 
Sbjct: 61  NRFITSNFCPFGDSCRYFHPNN---NTGS---TGFTNNTQLRVDMLNQQHIQGSTLNRDF 120

Query: 121 VSDRMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
           VS R GT W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 VSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 147

[Close]

BLAST of Lcy03g000460 vs. TAIR 10
Match: AT5G26749.2 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-38
Identity = 82/172 (47.67%), Postives = 102/172 (59.30%), Query Frame = 0


Query: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFRDP--NQAFSDGFGRGVC 60
           MP GKYYCDYCEK+FQDT  ARKRHLQS  H +AKALW+ S      N   S+   +G+C
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVNPQVSNFATKGLC 60

Query: 61  NRFVRT-------------------GFCQYGDSCKYFHPKNIPLNSSSHPFAGFPENNQA 120
           NRF+ +                    FC +GDSC+YFHP N   N+ S    GF  N Q 
Sbjct: 61  NRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNN---NTGS---TGFTNNTQL 120

Query: 121 PNIQVN-RFLEGNSLTGNLVSDRMGTSWGNLPPSLMPPPEGGYPHLPFVDWG 151
               +N + ++G++L  + VS R GT W +LPPSL PPPE GYP LPF+DWG
Sbjct: 121 RVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFIDWG 166

[Close]

BLAST of Lcy03g000460 vs. TAIR 10
Match: AT5G18550.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-05
Identity = 24/69 (34.78%), Postives = 34/69 (49.28%), Query Frame = 0


Query: 30  SHQKAKALWFDSFRDPNQAFSDGFGRGVCNRFVRTGFCQYGDSCKYFHPKNIPLNSSSHP 89
           +H + +A      R     F +  G+ VC  F+RTG C++G SCKY HP+      S  P
Sbjct: 75  NHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTP 134

Query: 90  ----FAGFP 95
               + GFP
Sbjct: 135 VSLNYMGFP 143

[Close]

BLAST of Lcy03g000460 vs. TAIR 10
Match: AT3G06410.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.3e-04
Identity = 18/50 (36.00%), Postives = 26/50 (52.00%), Query Frame = 0


Query: 30  SHQKAKALWFDSFRDPNQAFSDGFGRGVCNRFVRTGFCQYGDSCKYFHPK 80
           +H + +       R    A  +  G  VC  F+RTG C++G SCKY HP+
Sbjct: 78  NHPRDRGAVIGGVRGEAGALPERMGHPVCQHFMRTGTCKFGASCKYHHPR 127

[Close]

BLAST of Lcy03g000460 vs. TAIR 10
Match: AT2G47850.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 43.5 bits (101), Expect = 1.7e-04
Identity = 18/48 (37.50%), Postives = 28/48 (58.33%), Query Frame = 0


Query: 49  FSDGFGRGVCNRFVRTGFCQYGDSCKYFHPKN-------IPLNSSSHP 90
           + + FG   C  +++TG C++G SCK+ HPKN       +PLN   +P
Sbjct: 87  YPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYP 134

The following BLAST results are available for this feature:

BLAST of Lcy03g000460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JP11	5.9e-42	52.33	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=...	[more]
Q6AXL8	1.6e-18	31.18	Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1	[more]
Q2TA39	7.8e-18	32.94	Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1	[more]
Q9UDW3	5.1e-17	31.14	Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1	[more]
Q9CQR5	3.3e-16	32.34	Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1	[more]

BLAST of Lcy03g000460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWZ9	1.0e-76	89.40	zinc finger CCCH domain-containing protein 3 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1JFY8	1.6e-69	83.33	zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1EU59	3.2e-67	80.67	zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A5D3CFN3	5.5e-67	78.98	Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BQ25	5.5e-67	78.98	zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

BLAST of Lcy03g000460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158753.1	2.1e-76	89.40	zinc finger CCCH domain-containing protein 3 [Momordica charantia]	[more]
XP_022989487.1	3.2e-69	83.33	zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_0...	[more]
XP_022931617.1	6.7e-67	80.67	zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618....	[more]
XP_008450521.1	1.1e-66	78.98	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA00509...	[more]
XP_038879279.1	1.1e-66	78.21	zinc finger CCCH domain-containing protein 3 [Benincasa hispida]	[more]

BLAST of Lcy03g000460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26749.1	4.7e-42	53.59	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G26749.2	1.4e-38	47.67	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G18550.1	1.6e-05	34.78	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT3G06410.1	1.3e-04	36.00	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G47850.1	1.7e-04	37.50	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 54..79 e-value: 3.0E-4 score: 30.1
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 54..79 e-value: 4.6E-7 score: 29.6
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 52..80 score: 13.628843
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 3..38 e-value: 1.2E-4 score: 31.4
None	No IPR available	GENE3D	4.10.1000.10		coord: 51..116 e-value: 7.7E-6 score: 27.7
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 3..50 e-value: 8.5E-9 score: 37.3
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 1..150
IPR013085	U1-C, C2H2-type zinc finger	PFAM	PF06220	zf-U1	coord: 5..36 e-value: 3.7E-9 score: 36.2
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 4..59
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 56..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g000460.1	Lcy03g000460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding