Lcy03g000310 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g000310
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Adenylate kinase
Location	Chr03: 1112829 .. 1113501 (-)
RNA-Seq Expression	Lcy03g000310
Synteny	Lcy03g000310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTACCACTTTATTCTATTCTGATCCTTGGATTCCGAGAGAGTGTACTTTCAGGCCTATTTTATAGCCGTTGGGTTCGGGTTTGCAACCTTCTCCATTGGTTAGTGAGTTCACAACAGAAAATCGAGAATGGGACTCTCAGATGCTCACTCATTTGCTTCTCCCAGAGGATTTACAACTTATTCTTGGTATTCCAATTGGGCGGGTTGGTTCCTGTGATCGTTGGGTATGGCATTATAGTCGGCAGGGTGTGTATACTGTGTGAAAAGTGGGTATAAACTCGTTATGTTGCGCAAACGAGGGGTAGAGTCTTCTTGCGCTATGCCAAATTCTCGTTGGTGGTCTGGTTTGTGGGCTCAGAACCTTCCGTCTAAAATCAAATTATTTATGTGGCGAGCTTTTCAGTCTATTATCCCAACTATGACTTGCCTCATTGGTCGTGGAATTGATGCTGATCCATTTTGTAGGGGTTGCTTACGTCATCCTGAGACCATTGATCACGCTTTGGTAAGTTGCAAGCGATCTCAGGCTTTTTGGAAGATATTGCTGCCTGCGGTGGATTGGGAGGTTCAGTTTTATAACAGTTTCCAGGATCGTTGTTTGGCTCTCCAAGGTATTCTTTCTGACCATGATTTCCGATTGTGGTGTGTTGGTTGCTGGAGTCTGTGA

mRNA sequence

ATGGATCTACCACTTTATTCTATTCTGATCCTTGGATTCCGAGAGAGTGTACTTTCAGGCCTATTTTATAGCCGTTGGGTTCGGGTTTGCAACCTTCTCCATTGGTTAGTGAGTTCACAACAGAAAATCGAGAATGGGACTCTCAGATGCTCACTCATTTGCTTCTCCCAGAGGATTTACAACTTATTCTTGGTATTCCAATTGGGCGGGTTGGTTCCTGTGATCGTTGGGTATGGCATTATAGTCGGCAGGTCTATTATCCCAACTATGACTTGCCTCATTGGTCGTGGAATTGATGCTGATCCATTTTGTAGGGGTTGCTTACGTCATCCTGAGACCATTGATCACGCTTTGGTAAGTTGCAAGCGATCTCAGGCTTTTTGGAAGATATTGCTGCCTGCGGTGGATTGGGAGGTTCAGTTTTATAACAGTTTCCAGGATCGTTGTTTGGCTCTCCAAGGTATTCTTTCTGACCATGATTTCCGATTGTGGTGTGTTGGTTGCTGGAGTCTGTGA

Coding sequence (CDS)

ATGGATCTACCACTTTATTCTATTCTGATCCTTGGATTCCGAGAGAGTGTACTTTCAGGCCTATTTTATAGCCGTTGGGTTCGGGTTTGCAACCTTCTCCATTGGTTAGTGAGTTCACAACAGAAAATCGAGAATGGGACTCTCAGATGCTCACTCATTTGCTTCTCCCAGAGGATTTACAACTTATTCTTGGTATTCCAATTGGGCGGGTTGGTTCCTGTGATCGTTGGGTATGGCATTATAGTCGGCAGGTCTATTATCCCAACTATGACTTGCCTCATTGGTCGTGGAATTGATGCTGATCCATTTTGTAGGGGTTGCTTACGTCATCCTGAGACCATTGATCACGCTTTGGTAAGTTGCAAGCGATCTCAGGCTTTTTGGAAGATATTGCTGCCTGCGGTGGATTGGGAGGTTCAGTTTTATAACAGTTTCCAGGATCGTTGTTTGGCTCTCCAAGGTATTCTTTCTGACCATGATTTCCGATTGTGGTGTGTTGGTTGCTGGAGTCTGTGA

Protein sequence

MDLPLYSILILGFRESVLSGLFYSRWVRVCNLLHWLVSSQQKIENGTLRCSLICFSQRIYNLFLVFQLGGLVPVIVGYGIIVGRSIIPTMTCLIGRGIDADPFCRGCLRHPETIDHALVSCKRSQAFWKILLPAVDWEVQFYNSFQDRCLALQGILSDHDFRLWCVGCWSL

Homology

[Close]

BLAST of Lcy03g000310 vs. ExPASy TrEMBL
Match: A0A5A7VQ24 (Adenylate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00510 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 86  IIPTMTCLIGRGIDADPFCRGCLRHPETIDHALVSCKRSQAFWKILLPAVDWEVQFYNSF 145
           I+P +TCL+ R +D  P C  C +HPETI   +  C+ ++  WK  LP V     +Y  F
Sbjct: 128 ILPVLTCLVDRRMDISPLCPYCGKHPETITQVVFGCRLAKELWKCFLPVVLSGRNYYFDF 187

Query: 146 QDRCLALQGILSDHDFRLWCVGCWSL 172
            D C+ L   LS  DF LWC+GCW L
Sbjct: 188 SDFCVVLADSLSPLDFSLWCIGCWGL 213

[Close]

BLAST of Lcy03g000310 vs. ExPASy TrEMBL
Match: A0A6J1CTE3 (uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014578 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 87  IPTMTCLIGRGIDADPFCRGCLRHPETIDHALVSCKRSQAFWKILLPAVDWEVQFYNSFQ 146
           +P+M  LI RGID +P C  C +  ET DHAL  CKR++  W ILLP    +  F NS Q
Sbjct: 11  VPSMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQ 70

Query: 147 DRCLALQGILSDHDFRLWCVGCWSL 172
           D  L L   LS  DF L  VG W++
Sbjct: 71  DGLLYLVESLSTPDFDLVGVGVWAI 95

[Close]

BLAST of Lcy03g000310 vs. ExPASy TrEMBL
Match: A0A7J6I0I9 (GATA-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_020143 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.4e-04
Identity = 33/100 (33.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 34  HWLVSSQQKIENGTLRCSLICFSQRIYNLF--LVFQLGGLVPVIVGYGIIVGRSIIPTMT 93
           H+LV S  ++  G+  C   C +    N +  + +QL  L P I  +G  +  + +P   
Sbjct: 54  HYLVKSGYRVTRGSNLCPTRCSNMDQINAWWKMWWQL-QLPPWIKLFGWKLCHNCLPAKI 113

Query: 94  CLIGRGIDADPFCRGCLRHPETIDHALVSCKRSQAFWKIL 132
            LI RG+  DP C  C ++ E++ HAL SC +++A WK+L
Sbjct: 114 NLIHRGMTIDPLCNQCGQNVESLPHALWSCDKAKAAWKLL 152

[Close]

BLAST of Lcy03g000310 vs. NCBI nr
Match: KAA0067681.1 (UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa] >TYK23685.1 UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 6.8e-15
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 86  IIPTMTCLIGRGIDADPFCRGCLRHPETIDHALVSCKRSQAFWKILLPAVDWEVQFYNSF 145
           I+P +TCL+ R +D  P C  C +HPETI   +  C+ ++  WK  LP V     +Y  F
Sbjct: 128 ILPVLTCLVDRRMDISPLCPYCGKHPETITQVVFGCRLAKELWKCFLPVVLSGRNYYFDF 187

Query: 146 QDRCLALQGILSDHDFRLWCVGCWSL 172
            D C+ L   LS  DF LWC+GCW L
Sbjct: 188 SDFCVVLADSLSPLDFSLWCIGCWGL 213

[Close]

BLAST of Lcy03g000310 vs. NCBI nr
Match: XP_022145060.1 (uncharacterized protein LOC111014578 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-11
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 87  IPTMTCLIGRGIDADPFCRGCLRHPETIDHALVSCKRSQAFWKILLPAVDWEVQFYNSFQ 146
           +P+M  LI RGID +P C  C +  ET DHAL  CKR++  W ILLP    +  F NS Q
Sbjct: 11  VPSMRNLIKRGIDPNPNCLVCGKQIETTDHALFKCKRAKEVWNILLPQAFPQCDFNNSVQ 70

Query: 147 DRCLALQGILSDHDFRLWCVGCWSL 172
           D  L L   LS  DF L  VG W++
Sbjct: 71  DGLLYLVESLSTPDFDLVGVGVWAI 95

[Close]

BLAST of Lcy03g000310 vs. NCBI nr
Match: XP_030508852.1 (uncharacterized protein LOC115723496 [Cannabis sativa])

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-05
Identity = 29/85 (34.12%), Postives = 44/85 (51.76%), Query Frame = 0


Query: 87   IPTMTCLIGRGIDADPFCRGCLRHPETIDHALVSCKRSQAFWKILLPAVDWEVQFYNSFQ 146
            +P    L  R I   P+C  C    ET+ HAL SC R++A W++   ++D++    +S  
Sbjct: 1076 LPVAAELYRRHIAFSPYCTICNSCEETVHHALFSCPRAKAVWELSNFSIDFQTIERSSTA 1135

Query: 147  DRCLALQGILSDHDFRLWCVGCWSL 172
            D  L L   LS  +  L+ V CWS+
Sbjct: 1136 DTLLLLSTSLSSSELELFLVLCWSI 1160

[Close]

BLAST of Lcy03g000310 vs. NCBI nr
Match: KAF4370557.1 (hypothetical protein F8388_020143 [Cannabis sativa] >KAF4400508.1 hypothetical protein G4B88_023301 [Cannabis sativa])

HSP 1 Score: 54.7 bits (130), Expect = 9.2e-04
Identity = 33/100 (33.00%), Postives = 54/100 (54.00%), Query Frame = 0


Query: 34  HWLVSSQQKIENGTLRCSLICFSQRIYNLF--LVFQLGGLVPVIVGYGIIVGRSIIPTMT 93
           H+LV S  ++  G+  C   C +    N +  + +QL  L P I  +G  +  + +P   
Sbjct: 54  HYLVKSGYRVTRGSNLCPTRCSNMDQINAWWKMWWQL-QLPPWIKLFGWKLCHNCLPAKI 113

Query: 94  CLIGRGIDADPFCRGCLRHPETIDHALVSCKRSQAFWKIL 132
            LI RG+  DP C  C ++ E++ HAL SC +++A WK+L
Sbjct: 114 NLIHRGMTIDPLCNQCGQNVESLPHALWSCDKAKAAWKLL 152

[Close]

BLAST of Lcy03g000310 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 8.9e-05
Identity = 18/43 (41.86%), Postives = 25/43 (58.14%), Query Frame = 0


Query: 87  IPTMTCLIGRGIDADPFCRGCLRHPETIDHALVSCKRSQAFWK 130
           + T T L  R IDADP C+ C    ETI H + +C  +Q+ W+
Sbjct: 58  LATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWR 100

The following BLAST results are available for this feature:

BLAST of Lcy03g000310 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g000310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VQ24	3.3e-15	43.02	Adenylate kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G005...	[more]
A0A6J1CTE3	3.8e-11	47.06	uncharacterized protein LOC111014578 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A7J6I0I9	4.4e-04	33.00	GATA-type domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_020143 P...	[more]

BLAST of Lcy03g000310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067681.1	6.8e-15	43.02	UMP-CMP kinase isoform X1 [Cucumis melo var. makuwa] >TYK23685.1 UMP-CMP kinase ...	[more]
XP_022145060.1	7.8e-11	47.06	uncharacterized protein LOC111014578 [Momordica charantia]	[more]
XP_030508852.1	4.9e-05	34.12	uncharacterized protein LOC115723496 [Cannabis sativa]	[more]
KAF4370557.1	9.2e-04	33.00	hypothetical protein F8388_020143 [Cannabis sativa] >KAF4400508.1 hypothetical p...	[more]

BLAST of Lcy03g000310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02650.1	8.9e-05	41.86	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 82..128 e-value: 8.1E-7 score: 29.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g000310.1	Lcy03g000310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
molecular_function	GO:0019205	nucleobase-containing compound kinase activity