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Lcy02g013560 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAATTCCATTAATCATCTCTCTCGATTTCTCTCTCTTCTCGTTCTGTTAACAGTTCCGCCATGGGCTTCCCTGCGAGCTACACCGAGCTTCTTCTTCCAAAGCTCTTCATCCATGTACTCTCCTTCCTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTGTTTCGCCTTCTAGGGCTCCAGGATTTCCTCGAACCGGACATTCCTTGGCCCAATCAGCCCGATTCCTTCCCCACCGGGCCGTTGACGGACCTCGATCCTCTCTCCGCCGCCGTTCTCCGCGAGATTCTCCCCGTCGTGAAGTTTTCCGACCTTCTGGACCCGCCGGAGAGCTGCGCCGTGTGCCTCTACGAGTTCGAGGCCGACGACGAGATCCGCCGCCTCGCGAACTGCCGCCACATCTTCCACCGCGGTTGCCTCGATCGGTGGATCGGTTACGGCCAGAGGACCTGCCCGCTCTGCCGGACGGTGTTCATTCCGGCCGATTTGCGGACTGGCGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTCGAAGCACTCCACACCGATTCTTCCTCTTCTTCGTCGTCTTCGTCGAATCTTCTCACCGCTGGTTTGTAGCTTTTGGAGATTTGATTTTCTTTTGTTGATTTTGCTGCTTCTCATATCGGAAAACAGAAATAAAGAAGAAAAAGAAAAGAGAGAAAGAGAGGGGAAAGAGATGGAGATGATTGAGTTTGATGGAGGGGAAATGTTTGTTGTTCTTCTGTGTACATACCAAAAAAAGAAAAAGTTCCTGAAAGGAACTGGAAAATCAAAATCAAAATCAAATCAAATCAAATCAATTACAGGTTTCAGAATTAGATCAATCTTCTTGCAATTTTCATTTCCATTTCCTCTCTCTGTCTCTCTCTCTCTAACAATACAATTTCAAACAAATGGATTGGAAATTGAAACTGAAATTGAATCAATATGAGATTTAGATGTTGATGGATTTGGAGGAATGGAGATGAATGTTCTTGGAGATAAGAAGATTGTTGAAGAGTGGGGCAATGTTTTTGTAGCTCTGCCTGTTTTAATCCAATTGGTATAATTGGGAGATGCCCATTCATGTTTTTGAGTTCTTTGTTCTTTTTACTTTAATTTTATTTGAAGGAATTGAATTCTAAACTTCAATCAACTGTAAAATTAAGC ATAATTCCATTAATCATCTCTCTCGATTTCTCTCTCTTCTCGTTCTGTTAACAGTTCCGCCATGGGCTTCCCTGCGAGCTACACCGAGCTTCTTCTTCCAAAGCTCTTCATCCATGTACTCTCCTTCCTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTGTTTCGCCTTCTAGGGCTCCAGGATTTCCTCGAACCGGACATTCCTTGGCCCAATCAGCCCGATTCCTTCCCCACCGGGCCGTTGACGGACCTCGATCCTCTCTCCGCCGCCGTTCTCCGCGAGATTCTCCCCGTCGTGAAGTTTTCCGACCTTCTGGACCCGCCGGAGAGCTGCGCCGTGTGCCTCTACGAGTTCGAGGCCGACGACGAGATCCGCCGCCTCGCGAACTGCCGCCACATCTTCCACCGCGGTTGCCTCGATCGGTGGATCGGTTACGGCCAGAGGACCTGCCCGCTCTGCCGGACGGTGTTCATTCCGGCCGATTTGCGGACTGGCGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTCGAAGCACTCCACACCGATTCTTCCTCTTCTTCGTCGTCTTCGTCGAATCTTCTCACCGCTGGTTTGTAGCTTTTGGAGATTTGATTTTCTTTTGTTGATTTTGCTGCTTCTCATATCGGAAAACAGAAATAAAGAAGAAAAAGAAAAGAGAGAAAGAGAGGGGAAAGAGATGGAGATGATTGAGTTTGATGGAGGGGAAATGTTTGTTGTTCTTCTGTGTACATACCAAAAAAAGAAAAAGTTCCTGAAAGGAACTGGAAAATCAAAATCAAAATCAAATCAAATCAAATCAATTACAGGTTTCAGAATTAGATCAATCTTCTTGCAATTTTCATTTCCATTTCCTCTCTCTGTCTCTCTCTCTCTAACAATACAATTTCAAACAAATGGATTGGAAATTGAAACTGAAATTGAATCAATATGAGATTTAGATGTTGATGGATTTGGAGGAATGGAGATGAATGTTCTTGGAGATAAGAAGATTGTTGAAGAGTGGGGCAATGTTTTTGTAGCTCTGCCTGTTTTAATCCAATTGGTATAATTGGGAGATGCCCATTCATGTTTTTGAGTTCTTTGTTCTTTTTACTTTAATTTTATTTGAAGGAATTGAATTCTAAACTTCAATCAACTGTAAAATTAAGC ATGGGCTTCCCTGCGAGCTACACCGAGCTTCTTCTTCCAAAGCTCTTCATCCATGTACTCTCCTTCCTCGGCTTCCTCAGGAAGCTCATCTCCCTCTTGTTTCGCCTTCTAGGGCTCCAGGATTTCCTCGAACCGGACATTCCTTGGCCCAATCAGCCCGATTCCTTCCCCACCGGGCCGTTGACGGACCTCGATCCTCTCTCCGCCGCCGTTCTCCGCGAGATTCTCCCCGTCGTGAAGTTTTCCGACCTTCTGGACCCGCCGGAGAGCTGCGCCGTGTGCCTCTACGAGTTCGAGGCCGACGACGAGATCCGCCGCCTCGCGAACTGCCGCCACATCTTCCACCGCGGTTGCCTCGATCGGTGGATCGGTTACGGCCAGAGGACCTGCCCGCTCTGCCGGACGGTGTTCATTCCGGCCGATTTGCGGACTGGCGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTCGAAGCACTCCACACCGATTCTTCCTCTTCTTCGTCGTCTTCGTCGAATCTTCTCACCGCTGGTTTGTAG MGFPASYTELLLPKLFIHVLSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNQPDSFPTGPLTDLDPLSAAVLREILPVVKFSDLLDPPESCAVCLYEFEADDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPADLRTGGCNFDDRLWEDSEIFEALHTDSSSSSSSSSNLLTAGL Homology
BLAST of Lcy02g013560 vs. ExPASy Swiss-Prot
Match: Q9XF92 (Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 1.1e-45 Identity = 89/165 (53.94%), Postives = 113/165 (68.48%), Query Frame = 0
BLAST of Lcy02g013560 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 3.4e-23 Identity = 57/146 (39.04%), Postives = 81/146 (55.48%), Query Frame = 0
BLAST of Lcy02g013560 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.3e-22 Identity = 60/147 (40.82%), Postives = 85/147 (57.82%), Query Frame = 0
BLAST of Lcy02g013560 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11 Identity = 48/127 (37.80%), Postives = 63/127 (49.61%), Query Frame = 0
BLAST of Lcy02g013560 vs. ExPASy Swiss-Prot
Match: Q9P7E1 (Uncharacterized RING finger protein P4H10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBP4H10.07 PE=1 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11 Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 0
BLAST of Lcy02g013560 vs. ExPASy TrEMBL
Match: A0A6J1K664 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC111491048 PE=4 SV=1) HSP 1 Score: 340.9 bits (873), Expect = 3.3e-90 Identity = 166/182 (91.21%), Postives = 172/182 (94.51%), Query Frame = 0
BLAST of Lcy02g013560 vs. ExPASy TrEMBL
Match: A0A6J1H5J7 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita moschata OX=3662 GN=LOC111459775 PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 1.6e-89 Identity = 165/182 (90.66%), Postives = 170/182 (93.41%), Query Frame = 0
BLAST of Lcy02g013560 vs. ExPASy TrEMBL
Match: A0A6J1I1X7 (E3 ubiquitin-protein ligase RHA1B-like OS=Cucurbita maxima OX=3661 GN=LOC111469101 PE=4 SV=1) HSP 1 Score: 338.2 bits (866), Expect = 2.1e-89 Identity = 165/182 (90.66%), Postives = 171/182 (93.96%), Query Frame = 0
BLAST of Lcy02g013560 vs. ExPASy TrEMBL
Match: A0A6J1EQ05 (E3 ubiquitin-protein ligase RHA1B OS=Cucurbita moschata OX=3662 GN=LOC111435580 PE=4 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88 Identity = 165/182 (90.66%), Postives = 171/182 (93.96%), Query Frame = 0
BLAST of Lcy02g013560 vs. ExPASy TrEMBL
Match: A0A5A7TMZ8 (E3 ubiquitin-protein ligase RHA1B OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002380 PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 1.4e-88 Identity = 164/181 (90.61%), Postives = 170/181 (93.92%), Query Frame = 0
BLAST of Lcy02g013560 vs. NCBI nr
Match: XP_038906771.1 (E3 ubiquitin-protein ligase RHA1B [Benincasa hispida]) HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94 Identity = 174/182 (95.60%), Postives = 177/182 (97.25%), Query Frame = 0
BLAST of Lcy02g013560 vs. NCBI nr
Match: XP_023549736.1 (E3 ubiquitin-protein ligase RHA1B [Cucurbita pepo subsp. pepo]) HSP 1 Score: 341.3 bits (874), Expect = 5.2e-90 Identity = 167/182 (91.76%), Postives = 173/182 (95.05%), Query Frame = 0
BLAST of Lcy02g013560 vs. NCBI nr
Match: XP_022995549.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita maxima] >XP_023533861.1 E3 ubiquitin-protein ligase RHA1B-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 340.9 bits (873), Expect = 6.8e-90 Identity = 166/182 (91.21%), Postives = 172/182 (94.51%), Query Frame = 0
BLAST of Lcy02g013560 vs. NCBI nr
Match: KAG6579522.1 (Brassinosteroid-responsive RING protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016982.1 E3 ubiquitin-protein ligase RHA1B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 339.7 bits (870), Expect = 1.5e-89 Identity = 166/182 (91.21%), Postives = 172/182 (94.51%), Query Frame = 0
BLAST of Lcy02g013560 vs. NCBI nr
Match: XP_022958594.1 (E3 ubiquitin-protein ligase RHA1B-like [Cucurbita moschata]) HSP 1 Score: 338.6 bits (867), Expect = 3.4e-89 Identity = 165/182 (90.66%), Postives = 170/182 (93.41%), Query Frame = 0
BLAST of Lcy02g013560 vs. TAIR 10
Match: AT1G63840.1 (RING/U-box superfamily protein ) HSP 1 Score: 188.0 bits (476), Expect = 6.9e-48 Identity = 103/173 (59.54%), Postives = 123/173 (71.10%), Query Frame = 0
BLAST of Lcy02g013560 vs. TAIR 10
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2 ) HSP 1 Score: 184.5 bits (467), Expect = 7.6e-47 Identity = 89/165 (53.94%), Postives = 113/165 (68.48%), Query Frame = 0
BLAST of Lcy02g013560 vs. TAIR 10
Match: AT5G41400.1 (RING/U-box superfamily protein ) HSP 1 Score: 163.7 bits (413), Expect = 1.4e-40 Identity = 87/174 (50.00%), Postives = 111/174 (63.79%), Query Frame = 0
BLAST of Lcy02g013560 vs. TAIR 10
Match: AT4G11360.1 (RING-H2 finger A1B ) HSP 1 Score: 109.8 bits (273), Expect = 2.4e-24 Identity = 57/146 (39.04%), Postives = 81/146 (55.48%), Query Frame = 0
BLAST of Lcy02g013560 vs. TAIR 10
Match: AT4G11370.1 (RING-H2 finger A1A ) HSP 1 Score: 107.8 bits (268), Expect = 9.1e-24 Identity = 60/147 (40.82%), Postives = 85/147 (57.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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