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Lcy02g013390 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGTCTATGCTCGGTGATCTGCCGTCATACGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTGTAAGTTCTCAATAATGGCGGAATCCTCACACCCTTTGTTTCTCTTCTTGTAATTGATTTATGTAATCGTTCAAACCTTTCGTTCGTTTTCTTGATCCTTGGTGTTTTCCGCTATTCGTGATGATTGTTTGTTTCGTTTGAATGGGCATTTGCTCAAATTGTTGTTTCGTTTAGGTAGGGTGTGAATTGTGATGAAATTGAACCTCCTCTTGATCTTCTTTGCTCTGTTATTGTTTGGGCTCATTGGCATTATTGATCTGATTTCTGGTGTTGTCTTGATTGAATTTCCCAGAGCGTCATGTGTGCAATTTTGTTCTCGTTTTAGAATCTGGAAATTCTTGAATTATTCGAATTTTGACGTGTATGTTCTTAGTTTAGCTAAGTTGGTAGATTTAGATTACAATTGAATTCAGCAATTGATTTTTTTGATCCAGAAACCTGAAAAAGGAAGAATATAATGGAAATTCATTAGTTCTCTATCTTTCCACTTTACCATTTCCGCGTTTATGTTGGCTTGTCCCACATAAACACCATATATTTTTTCGGAATGAAATGAAGATGTATGGGTTCACTATCATACGGCGGGAGGGTAGTAACATTTTATGAATTTTCCGTTTCTCACTCAAAGATGGAATTTACTGACCCCCACCCCTTTTCCTTTTAGAACAAGGAATCAAATGATGTTTTTGACTTTTAGAACAAGGAATCAAATGATGTTTTTGTTTTACTTTTTACCTCTTCTTTTCACTCTATCTTGGTATGCTAATCTTATAAAGTCAGTCCTGTGAAAGAAACGATTCCATTAACTCAGTCATGAAGAGTTCACTATAATGTAATGATACTGAGGGGACAAAATCTGCTAGGAACAATAACTGGGTTACTGACATTCCACAGAAATGAATCTATTTACTTCCAATATGTAGGTCATCTTCAAATTTCTGACGATTCTGAAGCCCAAACATGCTTTTAGTCTTTGGAATTGGAGCAGCCTGCAACCAATTTAAGTTGCCTCTTCCTTGAGTATACTTAGAGCCTATTTGGAATGACATTCCAAGGACTTAAAAATCCTTTTTTAAGCATTTGGAAAGTCATTCCAAACAGGCCCTTAGGTTCATTGAGCCAGAATGAAAAGTCACGTTACATTGAAAAGTCCTTAAATTGCAGTGACACGGATCTCTTCTATACTGCAAATGTATATGCCGTGTTCATGGCTTCTCTGATTTCTTCAGTGGTATACAGCTCATTTTCAAGGTTTAAGCTTAAAACTCCCAATCGAATAATGCAGTAGGATCAACAACTTTAAGAAACATTGGTGAGAAGTTGTTGATTGAGAAGGTTCTAACACCATTTTAACTAAAGCTACCAAATGTCGTACCTTTCTCTGAAGGGAAATCCTTTTGGACATAAGACAGGTAGCAAATAGTTTTTTCATTGAAGCAAGGTTAAAACCAAATTTTCCTTGTAATTGTATGTACAAACTTGTGCTTGCTTTGGATATAATCACCCATCTTTGAATTCATTTCAATTGAGGCCACTTAACGGGTGGCCATCACCTGTTAATTTGCCGTGGATTGTGTGAACATGTGAATGGAAGAGCTGTCTGGATCAACTTAATGCTTTCATTAAAGCTTAAACTGCACTATAATGTAACATATTTTTACAAGTGGAGTTGCCAGCTGCAAAAATTAAAGTAGAACAAGAAGAAGAATTAGTTATTTTATAATATACAATGAACAAGTTGATGATGGAATTACTCTGCTGAGTCTGTTTTATTTTTATGTAGAAGATGATTCCTGCAACCTATCATCCCACCCACAGTAGAACCCTTCCGCCACCAGATCAGGGTAAGCAAGAAAAATTGTTTCTTCATTACTCTGCTGAAGCTATGATTTTACCAACCATACTGATAACTTTGTATCTTGATTGGCAAACGATATCCCTTGGTAGTTTTCCACTTTTAGCTTTAGTTTCCATCTCCTTCTGCTGTCATATTCTCCAAACAACTTGGTTCTTGATACTGTGTCACTGATTTTTACTGCAGTTATAAATACTGAGTCAAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAAAAGGTTAGTAAAGAATCTGGTATGCATTGATATGAAATACAGTCTATACATGGGTGAGCTTGTGAGACCACTCACACATTCCTTGTCGACTTTCCCTGGTCTTTCTAATGGCAGTCAAGAACAAAGAGACCTGCAGCCGAGCATCCGGTGCCCGAGCATGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA ATGGGGTCTATGCTCGGTGATCTGCCGTCATACGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTAAGATGATTCCTGCAACCTATCATCCCACCCACAGTAGAACCCTTCCGCCACCAGATCAGGTTATAAATACTGAGTCAAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAAAAGTCAAGAACAAAGAGACCTGCAGCCGAGCATCCGGTGCCCGAGCATGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA ATGGGGTCTATGCTCGGTGATCTGCCGTCATACGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCAACTCCTTCTAAGATGATTCCTGCAACCTATCATCCCACCCACAGTAGAACCCTTCCGCCACCAGATCAGGTTATAAATACTGAGTCAAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAAAAGTCAAGAACAAAGAGACCTGCAGCCGAGCATCCGGTGCCCGAGCATGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA MGSMLGDLPSYDPHNFSQLRPSDPSTPSKMIPATYHPTHSRTLPPPDQVINTESKNILIRHIYQHTEEKSRTKRPAAEHPVPEHGSKQPRASTTNTSN Homology
BLAST of Lcy02g013390 vs. ExPASy Swiss-Prot
Match: Q9FFS4 (DET1- and DDB1-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=DDA1 PE=1 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 2.0e-30 Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 0
BLAST of Lcy02g013390 vs. ExPASy TrEMBL
Match: A0A0A0KKG6 (DET1- and DDB1-associated protein 1 OS=Cucumis sativus OX=3659 GN=Csa_5G152230 PE=3 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 2.4e-47 Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0
BLAST of Lcy02g013390 vs. ExPASy TrEMBL
Match: A0A1S3AUC0 (DET1- and DDB1-associated protein 1 OS=Cucumis melo OX=3656 GN=LOC103482787 PE=3 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 2.4e-47 Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0
BLAST of Lcy02g013390 vs. ExPASy TrEMBL
Match: A0A6J1DSK3 (DET1- and DDB1-associated protein 1 OS=Momordica charantia OX=3673 GN=LOC111023922 PE=3 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 7.1e-47 Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0
BLAST of Lcy02g013390 vs. ExPASy TrEMBL
Match: A0A1S3ATF9 (DET1- and DDB1-associated protein 1 OS=Cucumis melo OX=3656 GN=LOC103482787 PE=3 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 2.3e-45 Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0
BLAST of Lcy02g013390 vs. ExPASy TrEMBL
Match: A0A6J1DVL7 (DET1- and DDB1-associated protein 1 OS=Momordica charantia OX=3673 GN=LOC111023922 PE=3 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 6.6e-45 Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0
BLAST of Lcy02g013390 vs. NCBI nr
Match: XP_004143885.1 (DET1- and DDB1-associated protein 1 isoform X1 [Cucumis sativus] >XP_008437335.1 PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Cucumis melo] >KGN50058.1 hypothetical protein Csa_000605 [Cucumis sativus]) HSP 1 Score: 197.6 bits (501), Expect = 5.0e-47 Identity = 96/98 (97.96%), Postives = 98/98 (100.00%), Query Frame = 0
BLAST of Lcy02g013390 vs. NCBI nr
Match: XP_022157123.1 (DET1- and DDB1-associated protein 1 isoform X1 [Momordica charantia]) HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46 Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0
BLAST of Lcy02g013390 vs. NCBI nr
Match: XP_038906812.1 (DET1- and DDB1-associated protein 1 isoform X1 [Benincasa hispida]) HSP 1 Score: 195.7 bits (496), Expect = 1.9e-46 Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0
BLAST of Lcy02g013390 vs. NCBI nr
Match: XP_008437336.1 (PREDICTED: DET1- and DDB1-associated protein 1 isoform X2 [Cucumis melo] >XP_011654719.1 DET1- and DDB1-associated protein 1 isoform X2 [Cucumis sativus]) HSP 1 Score: 191.0 bits (484), Expect = 4.7e-45 Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 0
BLAST of Lcy02g013390 vs. NCBI nr
Match: XP_022157124.1 (DET1- and DDB1-associated protein 1 isoform X2 [Momordica charantia]) HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44 Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0
BLAST of Lcy02g013390 vs. TAIR 10
Match: AT5G41560.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 132.9 bits (333), Expect = 1.4e-31 Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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