Lcy02g012560 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g012560
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H-like superfamily protein
Location	Chr02: 37715084 .. 37715947 (-)
RNA-Seq Expression	Lcy02g012560
Synteny	Lcy02g012560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTGTTTTCGCCTCCCTAACTATATTTGTTCTGATATTGACAGGATATGCTCCCGTTTCTGGTGGGGAACTCGCGGTGACAAGAACAAAAGCCATTGGATGAGTTGGAAGAGATTATGCAAAAATAAAGACAAAGGAGGCATGAGATTCAGACAAATATCTTCTTTCAATCAAGCCATGCTCGCAAAACAGAGCTGGAGAATCCTGAAAAACCCCAATAGCCTCCTGGTTAAGAAGCTCCGAGACAGATACTTTAAAGATGGGAACTTCTTAGAAGCCAAGATTGGGAACTCCCCGTCCATAACCTGGAGAAGCATCTGTTGGGGTAGAGATCTCTTCATCAAAGCTTACAAATGGAGAGTAGGGAACAGAAGATTGATTGATATTGAGAAAGACCCTTGAATTAATAGAAAAGGTAGCCTTAAACCGTTAAACGTCAAGGAGCATCTCAAGGGCCTCAAAGTGCACAGCTTGCTGAACGACAATAATGAGTGGAACGAGGATCTTATCCGCCAAAACTTTATCCCTCAGGACGCAAATGATATAATGAATATGCCTACAGGAGACAAGGATTCAAAAGACGAGATAACTTGGCATCCGGTCAAGAATGGATTATTCTCGGTGAAGAGTGCGTACCACTTAGCGATCGACATCAACTCTTGTCAGGAAGCTTCGCAATTGGATGGAAGAAAGTCTTCATCCCTGTGGAAGAGCATTTGGGCTATGGACATTCTTATTAGGACGAAAGTTTGCGTGTGGAAGATCCTAAAGGACATCCTCCCCTTTAAGGCTAACATCCAATCTAAGGGGATTAATATAAACCCGATGTGCACTCTACGCGGAAAAAAAAAGGGAAACTAA

mRNA sequence

ATGAGCTGTTTTCGCCTCCCTAACTATATTTGTTCTGATATTGACAGGATATGCTCCCGTTTCTGGTGGGGAACTCGCGGTGACAAGAACAAAAGCCATTGGATGAGTTGGAAGAGATTATGCAAAAATAAAGACAAAGGAGGCATGAGATTCAGACAAATATCTTCTTTCAATCAAGCCATGCTCGCAAAACAGAGCTGGAGAATCCTGAAAAACCCCAATAGCCTCCTGGTTAAGAAGCTCCGAGACAGATACTTTAAAGATGGGAACTTCTTAGAAGCCAAGATTGGGAACTCCCCGTCCATAACCTGGAGAAGCATCTGTTGGGGTAGAGATCTCTTCATCAAAGCTTACAAATGGAGAGGCCTCAAAGTGCACAGCTTGCTGAACGACAATAATGAGTGGAACGAGGATCTTATCCGCCAAAACTTTATCCCTCAGGACGCAAATGATATAATGAATATGCCTACAGGAGACAAGGATTCAAAAGACGAGATAACTTGGCATCCGGTCAAGAATGGATTATTCTCGGTGAAGAGTGCGTACCACTTAGCGATCGACATCAACTCTTGTCAGGAAGCTTCGCAATTGGATGGAAGAAAGTCTTCATCCCTGTGGAAGAGCATTTGGGCTATGGACATTCTTATTAGGACGAAAGTTTGCGTGTGGAAGATCCTAAAGGACATCCTCCCCTTTAAGGCTAACATCCAATCTAAGGGGATTAATATAAACCCGATGTGCACTCTACGCGGAAAAAAAAAGGGAAACTAA

Coding sequence (CDS)

ATGAGCTGTTTTCGCCTCCCTAACTATATTTGTTCTGATATTGACAGGATATGCTCCCGTTTCTGGTGGGGAACTCGCGGTGACAAGAACAAAAGCCATTGGATGAGTTGGAAGAGATTATGCAAAAATAAAGACAAAGGAGGCATGAGATTCAGACAAATATCTTCTTTCAATCAAGCCATGCTCGCAAAACAGAGCTGGAGAATCCTGAAAAACCCCAATAGCCTCCTGGTTAAGAAGCTCCGAGACAGATACTTTAAAGATGGGAACTTCTTAGAAGCCAAGATTGGGAACTCCCCGTCCATAACCTGGAGAAGCATCTGTTGGGGTAGAGATCTCTTCATCAAAGCTTACAAATGGAGAGGCCTCAAAGTGCACAGCTTGCTGAACGACAATAATGAGTGGAACGAGGATCTTATCCGCCAAAACTTTATCCCTCAGGACGCAAATGATATAATGAATATGCCTACAGGAGACAAGGATTCAAAAGACGAGATAACTTGGCATCCGGTCAAGAATGGATTATTCTCGGTGAAGAGTGCGTACCACTTAGCGATCGACATCAACTCTTGTCAGGAAGCTTCGCAATTGGATGGAAGAAAGTCTTCATCCCTGTGGAAGAGCATTTGGGCTATGGACATTCTTATTAGGACGAAAGTTTGCGTGTGGAAGATCCTAAAGGACATCCTCCCCTTTAAGGCTAACATCCAATCTAAGGGGATTAATATAAACCCGATGTGCACTCTACGCGGAAAAAAAAAGGGAAACTAA

Protein sequence

MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQAMLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKWRGLKVHSLLNDNNEWNEDLIRQNFIPQDANDIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLDGRKSSSLWKSIWAMDILIRTKVCVWKILKDILPFKANIQSKGININPMCTLRGKKKGN

Homology

[Close]

BLAST of Lcy02g012560 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.5e-26
Identity = 53/114 (46.49%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNK-DKGGMRFRQISSFNQ 60
           MSCFRL   +C  +    + FWW +  +K K  W++W++LCK+K D GG+ FR +  FNQ
Sbjct: 8   MSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQ 67

Query: 61  AMLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDL 114
           A+LAKQS+RI+  P++LL + LR RYF   + +E  +G  PS  WRSI  GR+L
Sbjct: 68  ALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

[Close]

BLAST of Lcy02g012560 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.6e-17
Identity = 70/267 (26.22%), Postives = 117/267 (43.82%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
           MS   LP  I + +D++   F WG+  +K K H + W ++C  K +GG+  R   S N+A
Sbjct: 53  MSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRA 112

Query: 61  MLAKQSWRILKNPNSLLVKKLRDRY----FKDGNFLEAKIGNSPSITWRSICWG-RDLFI 120
           +++K  WR+L+  NSL    L+ +Y     +D  +L  K   S S TWRSI  G RD+  
Sbjct: 113 LISKVGWRLLQEKNSLWTLVLQKKYHVGEIRDSRWLIPK--GSWSSTWRSIAIGLRDVVS 172

Query: 121 KAYKW-------------RGLKVHSLLN-DNNEWNED----LIRQNFIPQDAND------ 180
               W             R +    LL  DN E   D    + +  +IP    D      
Sbjct: 173 HGVGWIPGDGQQIRFWTDRWVSGKPLLELDNGERPTDCDTVVAKDLWIPGRGWDFAKIDP 232

Query: 181 -------------IMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLD 226
                        ++++ TG   ++D ++W   ++G FSV+SAY +           ++ 
Sbjct: 233 YTTNNTRLELRAVVLDLVTG---ARDRLSWKFSQDGQFSVRSAYEML-------TVDEVP 292

[Close]

BLAST of Lcy02g012560 vs. ExPASy TrEMBL
Match: A0A803NTN0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 103/279 (36.92%), Postives = 152/279 (54.48%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
           MSCF+L    CS ++ + + FWWGT  +  K HW  WK LCK+K +GGM FR    FNQA
Sbjct: 518 MSCFKLTKKFCSQLESMMANFWWGTNQNGTKIHWKRWKALCKSKHEGGMGFRSFVHFNQA 577

Query: 61  MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKW 120
           +LAKQ+WRI   PNSLL + L+ RYF + +FL+A IG+SPS TW+SICWGRDL +K  ++
Sbjct: 578 LLAKQAWRIFDMPNSLLSRLLKHRYFSNNSFLDAHIGHSPSYTWQSICWGRDLLVKGVRF 637

Query: 121 R------------------------------GLKVHSLLNDNNEWNEDLIRQNFIPQDAN 180
           +                               L V + + D  EWN DL+   F P D  
Sbjct: 638 KVGNGTNIACAIDPWIPSHTNFKPVSFQGSSSLSVSTFITDQREWNIDLLNSYFQPIDVE 697

Query: 181 DIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLDGRKSSSLWKSIW 240
            I+ +P      +D + WH   +G+++VKS +HLA  +    ++S  D  +    WK  W
Sbjct: 698 KILTIPLSFFADQDRLIWHHSSSGIYNVKSGFHLATALEEQNDSSTSDPNR--GWWKYFW 757

Query: 241 AMDILIRTKVCVWKILKDILPFKANIQSKGININPMCTL 250
            +++  + ++  WK+L ++LP  A +  K I  +  C+L
Sbjct: 758 NLNLPPKIRIFAWKVLNNVLPVAAALFKKKIIDSAACSL 794

[Close]

BLAST of Lcy02g012560 vs. ExPASy TrEMBL
Match: A0A803QBU0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-52
Identity = 102/281 (36.30%), Postives = 158/281 (56.23%), Query Frame = 0


Query: 1    MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
            MSCFRLP Y C+ ++ + S FWWG   + +K HW SW   CK K +GGM FR    FNQA
Sbjct: 1508 MSCFRLPVYFCNQLESMMSNFWWGMNENGSKIHWRSWNLRCKKKGEGGMGFRSFIQFNQA 1567

Query: 61   MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKW 120
            +LAKQ+WR+++NP SLL   L+ +YF + +FL+A +G+SPS+TW+ I WGR+L IK  +W
Sbjct: 1568 LLAKQAWRLVENPTSLLATLLKSKYFPNNSFLDASMGHSPSLTWQGIRWGRELLIKGLRW 1627

Query: 121  R---GLKVHS---------------------------LLNDNNEWNEDLIRQNFIPQDAN 180
            +   G  + S                           L+ D+ +WN  L++Q F P D +
Sbjct: 1628 KIGEGRLIRSGFDPWIPGHTSFLPLTYSGPSNGVVANLITDDRQWNVTLLQQYFSPIDVD 1687

Query: 181  DIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLDGRKSSSL--WKS 240
             I+ +P     S+D++ WHP  +G F+V+SAYHLA  +    E   L    +S++  WK 
Sbjct: 1688 KILTLPLSYFPSRDKLIWHPHSSGNFTVQSAYHLATSL----EEEDLSSTSTSAVAWWKL 1747

Query: 241  IWAMDILIRTKVCVWKILKDILPFKANIQSKGININPMCTL 250
             W++ +  + K+  W+ + D LP   ++  + I  +  C++
Sbjct: 1748 FWSLQVPQKVKIFAWRAIHDALPVATSLVRRKIITDSTCSI 1784

[Close]

BLAST of Lcy02g012560 vs. ExPASy TrEMBL
Match: A0A2K3KY66 (Ribonuclease H OS=Trifolium pratense OX=57577 GN=L195_g027085 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 6.6e-52
Identity = 107/281 (38.08%), Postives = 156/281 (55.52%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
           MSCF LP  +C  I+ + S FWWG+  DK K HW++WK++CKNK +GG  FR    FN+A
Sbjct: 385 MSCFLLPKGLCKQIESMTSNFWWGSNTDKKKLHWINWKKMCKNKTQGGYGFRNTCMFNEA 444

Query: 61  MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKW 120
           +LAKQ WRI   P+SL+ K  + +YF    F+EAK GN  S TWRSI   R +  K   W
Sbjct: 445 LLAKQGWRIATQPDSLVAKVYKAKYFPKCQFMEAKNGNMLSYTWRSILHARWILQKGCFW 504

Query: 121 -------------------RGLKV---------HSLLND-----NNEWNEDLIRQNFIPQ 180
                               G KV         ++L+ D      N+WN++LI Q F+P 
Sbjct: 505 TIGNGESVNIWKDSWLPKQNGFKVWSTQQGYTRYNLVKDLINPATNQWNQNLIHQIFLPF 564

Query: 181 DANDIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLDGRKSSSL-W 240
           +AN I+ +P  + +SKDE+ W   K+GL++VKS YH A++ N  +         ++ L W
Sbjct: 565 EANQILQLPLVEPNSKDELVWSGTKDGLYTVKSGYHAAMEWNHLRHNQVSSNAIATDLTW 624

Query: 241 KSIWAMDILIRTKVCVWKILKDILPFKANIQSKGININPMC 248
           +++W + I  +    +W+IL   LP ++++ SKGI  NP C
Sbjct: 625 QNLWKLKIPPKHATLIWRILNHSLPVRSSLSSKGIQCNPTC 665

[Close]

BLAST of Lcy02g012560 vs. ExPASy TrEMBL
Match: A0A803PQ30 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 100/279 (35.84%), Postives = 151/279 (54.12%), Query Frame = 0


Query: 1    MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
            MSCFRLP Y C  ++ +   FWWG   + +K HW SW  LCK+K +GGM FR    FNQA
Sbjct: 1250 MSCFRLPVYFCKQVESMMVNFWWGLTENGSKIHWRSWNLLCKSKSEGGMGFRSFIHFNQA 1309

Query: 61   MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKW 120
            +LAKQ+WRI  NP+SLL + L+ RYF +  FLEA +G+SPS+TW+ I W R+L +K  +W
Sbjct: 1310 LLAKQAWRIYDNPDSLLSRVLKSRYFPNNTFLEASLGHSPSLTWQGIHWARELLLKGLRW 1369

Query: 121  R---GLKVHS---------------------------LLNDNNEWNEDLIRQNFIPQDAN 180
            +   G  + S                           L++D  +WN  ++ Q F P D +
Sbjct: 1370 KVGDGRHIQSDYDPWIPGHNTFLPFLYKGPSNGVVANLISDERQWNVPILHQFFSPADVD 1429

Query: 181  DIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLDGRKSSSLWKSIW 240
             I+ +P      +D + WH    GL++V S YHL  D+++  ++S    R  SS WK  W
Sbjct: 1430 RILTIPLSYFSGRDTLIWHHHSTGLYTVSSGYHLVSDLDTMDQSS--SSRVHSSWWKFFW 1489

Query: 241  AMDILIRTKVCVWKILKDILPFKANIQSKGININPMCTL 250
            ++ +  + K+  WK + D LP    +  + +  +  C++
Sbjct: 1490 SLQLPPKVKIFAWKAVHDALPIATLLVKRKVITDSTCSV 1526

[Close]

BLAST of Lcy02g012560 vs. ExPASy TrEMBL
Match: A0A803Q6Y1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 2.5e-51
Identity = 105/278 (37.77%), Postives = 150/278 (53.96%), Query Frame = 0


Query: 1    MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
            MSCFRLP   C+ I+ + + FWWGT  D +K HW  WK LCK+K +GGM FR    FNQA
Sbjct: 1054 MSCFRLPTSFCNQIESMMANFWWGTNKDGSKIHWKRWKLLCKSKFEGGMGFRSFVDFNQA 1113

Query: 61   MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKW 120
            MLAKQ+WR+  NPNSLL + L+ RYF   +FLEA  G+SPS+ W+ I WGR+L +K  ++
Sbjct: 1114 MLAKQAWRLFDNPNSLLGRLLKHRYFPQNSFLEAHKGHSPSLMWQGIHWGRELLLKGLRY 1173

Query: 121  R---GLKVHSLLN---------------------------DNNEWNEDLIRQNFIPQDAN 180
            +   G  V S LN                           D  EWN   + Q+F   D +
Sbjct: 1174 KIGNGFHVRSGLNPWIPGHDEFKPISYTRDPSTPVSTYILDTMEWNLPQLHQDFAQIDID 1233

Query: 181  DIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLDGRKSSSLWKSIW 240
             I+ +P     S D + WH   NG +SVKS +HLA  ++   + S  D  K  + WK  W
Sbjct: 1234 RILTIPLSFYQSSDRLIWHHNNNGFYSVKSGFHLATSLSEKDQESSSDDYK--TWWKFFW 1293

Query: 241  AMDILIRTKVCVWKILKDILPFKANIQSKGININPMCT 249
             + +  + K+  WK++++ LP    +  + +  + +CT
Sbjct: 1294 KLHLPPKVKIFTWKVIQNALPVTTALHKRKVIDSALCT 1329

[Close]

BLAST of Lcy02g012560 vs. NCBI nr
Match: PNX71213.1 (ribonuclease H [Trifolium pratense])

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-51
Identity = 107/281 (38.08%), Postives = 156/281 (55.52%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
           MSCF LP  +C  I+ + S FWWG+  DK K HW++WK++CKNK +GG  FR    FN+A
Sbjct: 385 MSCFLLPKGLCKQIESMTSNFWWGSNTDKKKLHWINWKKMCKNKTQGGYGFRNTCMFNEA 444

Query: 61  MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKW 120
           +LAKQ WRI   P+SL+ K  + +YF    F+EAK GN  S TWRSI   R +  K   W
Sbjct: 445 LLAKQGWRIATQPDSLVAKVYKAKYFPKCQFMEAKNGNMLSYTWRSILHARWILQKGCFW 504

Query: 121 -------------------RGLKV---------HSLLND-----NNEWNEDLIRQNFIPQ 180
                               G KV         ++L+ D      N+WN++LI Q F+P 
Sbjct: 505 TIGNGESVNIWKDSWLPKQNGFKVWSTQQGYTRYNLVKDLINPATNQWNQNLIHQIFLPF 564

Query: 181 DANDIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLDGRKSSSL-W 240
           +AN I+ +P  + +SKDE+ W   K+GL++VKS YH A++ N  +         ++ L W
Sbjct: 565 EANQILQLPLVEPNSKDELVWSGTKDGLYTVKSGYHAAMEWNHLRHNQVSSNAIATDLTW 624

Query: 241 KSIWAMDILIRTKVCVWKILKDILPFKANIQSKGININPMC 248
           +++W + I  +    +W+IL   LP ++++ SKGI  NP C
Sbjct: 625 QNLWKLKIPPKHATLIWRILNHSLPVRSSLSSKGIQCNPTC 665

[Close]

BLAST of Lcy02g012560 vs. NCBI nr
Match: XP_030502375.1 (uncharacterized protein LOC115717530 [Cannabis sativa])

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-51
Identity = 100/279 (35.84%), Postives = 151/279 (54.12%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
           MSCFRLP Y C  ++ +   FWWG   + +K HW SW  LCK+K +GGM FR    FNQA
Sbjct: 229 MSCFRLPVYFCKQVESMMVNFWWGLTENGSKIHWRSWNLLCKSKSEGGMGFRSFIHFNQA 288

Query: 61  MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKW 120
           +LAKQ+WRI  NP+SLL + L+ RYF +  FLEA +G+SPS+TW+ I W R+L +K  +W
Sbjct: 289 LLAKQAWRIYDNPDSLLSRVLKSRYFPNNTFLEASLGHSPSLTWQGIHWARELLLKGLRW 348

Query: 121 R---GLKVHS---------------------------LLNDNNEWNEDLIRQNFIPQDAN 180
           +   G  + S                           L++D  +WN  ++ Q F P D +
Sbjct: 349 KVGDGRHIQSDYDPWIPGHNTFLPFLYKGPSNGVVANLISDERQWNVPILHQFFSPADVD 408

Query: 181 DIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLDGRKSSSLWKSIW 240
            I+ +P      +D + WH    GL++V S YHL  D+++  ++S    R  SS WK  W
Sbjct: 409 RILTIPLSYFSGRDTLIWHHHSTGLYTVSSGYHLVSDLDTMDQSS--SSRVHSSWWKFFW 468

Query: 241 AMDILIRTKVCVWKILKDILPFKANIQSKGININPMCTL 250
           ++ +  + K+  WK + D LP    +  + +  +  C++
Sbjct: 469 SLQLPPKVKIFAWKAVHDALPIATLLVKRKVITDSTCSV 505

[Close]

BLAST of Lcy02g012560 vs. NCBI nr
Match: XP_024037590.1 (uncharacterized protein LOC112097210 [Citrus clementina])

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-51
Identity = 102/278 (36.69%), Postives = 153/278 (55.04%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
           MS F++P  +C DI +  +RFWWGT+ D+   HW  W+R+  +K +GGM FR +SSFNQA
Sbjct: 604 MSVFKIPLGLCEDIQKAMARFWWGTKQDRKGIHWARWERISHSKARGGMGFRDLSSFNQA 663

Query: 61  MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKW 120
           ++AKQ WRI++ P+SL+ + L+ RYFK   F+ A +G+ PS  WRSI WGR +  K  +W
Sbjct: 664 LVAKQGWRIMQFPSSLVARVLKARYFKHTGFMNAGLGSKPSFVWRSIVWGRQVLHKGARW 723

Query: 121 R-------------------------------GLKVHSLLNDNNEWNEDLIRQNFIPQDA 180
           R                                  V  L+++  +W EDLI Q+F P+DA
Sbjct: 724 RIGNGQNVLVYGNNWIPRPTTFKPISAPSMGTDTTVAELIDEKQQWREDLILQHFRPEDA 783

Query: 181 NDIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLDGRKSSSLWKSI 240
             IM +P   +  +D++ WH  K G +SVKS Y +A+ I   ++ S        +LW+ I
Sbjct: 784 EAIMQIPLPKRPKEDQLIWHYDKKGYYSVKSGYQVAMRIKFPEDPS--CSNHDQNLWRFI 843

Query: 241 WAMDILIRTKVCVWKILKDILPFKANIQSKGININPMC 248
           W + I  + K+ +W+   D+LP   N+  K +   PMC
Sbjct: 844 WKLAIPEKVKIFLWRAAHDLLPTAENLWKKKVLQEPMC 879

[Close]

BLAST of Lcy02g012560 vs. NCBI nr
Match: XP_030509046.1 (uncharacterized protein LOC115723707 [Cannabis sativa])

HSP 1 Score: 212.2 bits (539), Expect = 5.2e-51
Identity = 105/278 (37.77%), Postives = 150/278 (53.96%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
           MSCFRLP   C+ I+ + + FWWGT  D +K HW  WK LCK+K +GGM FR    FNQA
Sbjct: 518 MSCFRLPTSFCNQIESMMANFWWGTNKDGSKIHWKRWKLLCKSKFEGGMGFRSFVDFNQA 577

Query: 61  MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKW 120
           MLAKQ+WR+  NPNSLL + L+ RYF   +FLEA  G+SPS+ W+ I WGR+L +K  ++
Sbjct: 578 MLAKQAWRLFDNPNSLLGRLLKHRYFPQNSFLEAHKGHSPSLMWQGIHWGRELLLKGLRY 637

Query: 121 R---GLKVHSLLN---------------------------DNNEWNEDLIRQNFIPQDAN 180
           +   G  V S LN                           D  EWN   + Q+F   D +
Sbjct: 638 KIGNGFHVRSGLNPWIPGHDEFKPISYTRDPSTPVSTYILDTMEWNLPQLHQDFAQIDID 697

Query: 181 DIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAIDINSCQEASQLDGRKSSSLWKSIW 240
            I+ +P     S D + WH   NG +SVKS +HLA  ++   + S  D  K  + WK  W
Sbjct: 698 RILTIPLSFYQSSDRLIWHHNNNGFYSVKSGFHLATSLSEKDQESSSDDYK--TWWKFFW 757

Query: 241 AMDILIRTKVCVWKILKDILPFKANIQSKGININPMCT 249
            + +  + K+  WK++++ LP    +  + +  + +CT
Sbjct: 758 KLHLPPKVKIFTWKVIQNALPVTTALHKRKVIDSALCT 793

[Close]

BLAST of Lcy02g012560 vs. NCBI nr
Match: XP_024044510.1 (uncharacterized protein LOC112100177 [Citrus clementina])

HSP 1 Score: 212.2 bits (539), Expect = 5.2e-51
Identity = 99/260 (38.08%), Postives = 154/260 (59.23%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
           MS F++P  +CSD+++  +RFWWG+ G K   HW SW RLC+ K KGG+ FR +S FNQA
Sbjct: 671 MSVFKIPQTLCSDMEKAIARFWWGSTGGKKSIHWSSWNRLCQAKTKGGLGFRDLSCFNQA 730

Query: 61  MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDLFIKAYKW 120
           ++AKQ WRIL  P+SL+ K L+ +YFK   F+EAK+G++PS  WRSI WGR L  +    
Sbjct: 731 LIAKQGWRILHKPDSLMAKILKAKYFKGAGFMEAKLGSNPSFVWRSILWGRHLLKE---- 790

Query: 121 RGLKVH------SLLNDNNEWNEDLIRQNFIPQDANDIMNMPTGDKDSKDEITWHPVKNG 180
            GL +H       L+ D  +WN + I Q+F    + +I+ +P       D + W   K+G
Sbjct: 791 -GLSLHLEAVVADLIKDGLQWNRERIAQSFSENTSAEILRLPLPRIPQPDTLIWRFDKHG 850

Query: 181 LFSVKSAYHLAIDINSCQEASQLDGRKSSSLWKSIWAMDILIRTKVCVWKILKDILPFKA 240
            +S KS Y +A+     +  S  D  KS   W  +W+ ++  + K+ +W+ +K++LP  +
Sbjct: 851 KYSAKSGYQIAVKEKFKEGPSCSDSSKSR--WDVVWSNELPEKVKIFMWRAVKNLLPTTS 910

Query: 241 NIQSKGININPMCTLRGKKK 255
           N+  + I + P+C   G ++
Sbjct: 911 NLWKRKIVVEPVCVRCGCRR 923

[Close]

BLAST of Lcy02g012560 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-30
Identity = 77/288 (26.74%), Postives = 125/288 (43.40%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNKDKGGMRFRQISSFNQA 60
           M+CF LP  +C  I  + + FWW  + +    HW +W  L   K +GG+ F+ I +FN A
Sbjct: 8   MACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLA 67

Query: 61  MLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICW----------- 120
           +L KQ WR+L  P SL+ K  + RYF   + L A +G+ PS  W+SI             
Sbjct: 68  LLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARA 127

Query: 121 ----GRDLFIKAYKWRG------------------------LKVHSLLNDN-NEWNEDLI 180
               G D+ I  +KW                          LKV  L++++  EW +D+I
Sbjct: 128 VVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVI 187

Query: 181 RQNFIPQDANDIMNMPTGDKDSKDEITWHPVKNGLFSVKSAYHLAID-INSCQEASQLDG 240
              F   +   I  +  G +   D  TW    +G ++VKS Y +    IN      ++  
Sbjct: 188 EMLFPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSE 247

Query: 241 RKSSSLWKSIWAMDILIRTKVCVWKILKDILPFKANIQSKGININPMC 248
              + +++ IW      + +  +WK L + LP    +  + ++    C
Sbjct: 248 PSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESAC 295

[Close]

BLAST of Lcy02g012560 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 120.2 bits (300), Expect = 2.5e-27
Identity = 53/114 (46.49%), Postives = 75/114 (65.79%), Query Frame = 0


Query: 1   MSCFRLPNYICSDIDRICSRFWWGTRGDKNKSHWMSWKRLCKNK-DKGGMRFRQISSFNQ 60
           MSCFRL   +C  +    + FWW +  +K K  W++W++LCK+K D GG+ FR +  FNQ
Sbjct: 8   MSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDLGWFNQ 67

Query: 61  AMLAKQSWRILKNPNSLLVKKLRDRYFKDGNFLEAKIGNSPSITWRSICWGRDL 114
           A+LAKQS+RI+  P++LL + LR RYF   + +E  +G  PS  WRSI  GR+L
Sbjct: 68  ALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121

The following BLAST results are available for this feature:

BLAST of Lcy02g012560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93295	3.5e-26	46.49	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0C2F6	6.6e-17	26.22	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Lcy02g012560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803NTN0	1.3e-52	36.92	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803QBU0	1.7e-52	36.30	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2K3KY66	6.6e-52	38.08	Ribonuclease H OS=Trifolium pratense OX=57577 GN=L195_g027085 PE=4 SV=1	[more]
A0A803PQ30	1.1e-51	35.84	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803Q6Y1	2.5e-51	37.77	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lcy02g012560 vs. NCBI nr


Match Name	E-value	Identity	Description
PNX71213.1	1.4e-51	38.08	ribonuclease H [Trifolium pratense]	[more]
XP_030502375.1	2.3e-51	35.84	uncharacterized protein LOC115717530 [Cannabis sativa]	[more]
XP_024037590.1	3.0e-51	36.69	uncharacterized protein LOC112097210 [Citrus clementina]	[more]
XP_030509046.1	5.2e-51	37.77	uncharacterized protein LOC115723707 [Cannabis sativa]	[more]
XP_024044510.1	5.2e-51	38.08	uncharacterized protein LOC112100177 [Citrus clementina]	[more]

BLAST of Lcy02g012560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	2.4e-30	26.74	Ribonuclease H-like superfamily protein	[more]
ATMG00310.1	2.5e-27	46.49	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 176..250 e-value: 1.2E-7 score: 32.4
None	No IPR available	PANTHER	PTHR33116:SF41	SUBFAMILY NOT NAMED	coord: 1..200
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 1..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g012560.1	Lcy02g012560.1	mRNA