Lcy02g012480 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g012480
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr02: 37569916 .. 37571553 (+)
RNA-Seq Expression	Lcy02g012480
Synteny	Lcy02g012480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCCTCTTGGAGCGATCAGCGGCAGTGGGGAGGTGTGGGTTGGATCTTACGTGACTCCATCGGATCTCCAATCTGCTTGGGATACTGGAAAATCGAAGATTTAAGGTCCATCAAAATGCTTGAAATGCAAGCTATTCTTGAAGGAATGCGAGCTTTACCTTCAGTTCGAGCGTCTCTACCAGACTTATTCATTTCCCCTGTCGTGGTAGAATCTGACGCTCTTGGAGTGGTAAAGACCCTAAATGGCGAAGTGGAAGTCCTCTTGAAGCCATTTCTTTCGAGTATTGCTCTCACTCATGTAACAGCGCCGCCCACAGATTGGCGCACTTTGCGTGTGCCCCCCCCCCCCCCCATCTTTTCTACTTTGTTTTGGATCCCTCTTCCTTGGAGGAGGGTGTGGGCTTCTAGATCGAGTTTATACCCGACTTGTTTTGTAATCTCTTTAATGAGGTAGTTGAACGTTTTCTATCTTGCAGTTAATGAATTTTTCCTTTAAAAAAAACAAATTGGTAATGAGTAGAGTAATTCATATATATCTTGTAAATTGTGAGGTCTCCCTTCATTTTTTTCGATGTGGGATCCTCAACAATAATTAATTTTTTAAAATTCAGAGACTAGATATTTATATAATACTTATATATATAAAAGAACAAGATTTATAATTTCACTTTAAAAGTACTTTCCTTAATTGAGCATGTCATGAGGTTGTTATGTATTCTTTTTAGTATCCAAATTAATGTTATTAATTAGAATAATTTATTGTTTTGTCGTTAAGTTTTTCTTCAAGTGGTATGTTTATAAGGCCCAATATAGTTAGCTCACACTTTTAATTTGTCACAAATAGACAATTTAAAGCATAAGAAGAAAAAGAGAAGTTTTAGATGCTCTTTTTCTGTTTGGTAAAACTATAATTTTGAGCAACGACTATTTGTTGAATGCCAAATAATTGATTGAATCTTCTTTTCTTTACTAATTAATTGACTAATTATCAATAATTGATTACTATTATTATATACTTTATTGTAAAGGTCGTTTAATGATTGATATTTCTGTCTTCTAAAAGTAAGTTTGGTTAATGCAAGCTAATTTGATGTTGATAAGGATGTTGTATATTGTTTTATGTTTTTCAAAATTATATTACTTGCTTATATTATCACTTCCACTTTGTTTCAGAATCATTTTTTAAAAAAAATATTTAAAAAGTTTTAGCCAAAATTTTAAAATCAAAGAGAGCTGATTACAGACAATTCTGTGCCATCTTTAAATTTCTATATAATTTCAAAACAATTTCAAAACATACTTTTGTTTTTGTTTTTAAAATATGGCTGAAATTTTAAATGATTTTACAAGCATATTACAAAAAGCCTATTGACTACACGGTGAAAAACCAACCGCTCCTCGCGCGAGGTGGTTCTATTGCTAGCCCTAGGGCATTTTGCGAAGGCAACCACTCCCGCTTTAAAGAAGCCAAATCTTCGATTTCATTCATCAACCAATTTTCGAATCTAAGATGTCTTCACATTCAAAGTTTAAAGCTCTGATAACTTCCGATGCATCTACCTCCACAATGATCAGAGAGTTCCTTTCTCTTTTCACCACTGATTTTTTTCTTTTAAAGAAAAAACACTTTTAA

mRNA sequence

ATGGATGCCTCTTGGAGCGATCAGCGGCAGTGGGGAGGTGTGGGTTGGATCTTACGTGACTCCATCGGATCTCCAATCTGCTTGGGATACTGGAAAATCGAAGATTTAAGGTCCATCAAAATGCTTGAAATGCAAGCTATTCTTGAAGGAATGCGAGCTTTACCTTCAGTTCGAGCGTCTCTACCAGACTTATTCATTTCCCCTGTCGTGGTAGAATCTGACGCTCTTGGAGTGAAAAAACACTTTTAA

Coding sequence (CDS)

ATGGATGCCTCTTGGAGCGATCAGCGGCAGTGGGGAGGTGTGGGTTGGATCTTACGTGACTCCATCGGATCTCCAATCTGCTTGGGATACTGGAAAATCGAAGATTTAAGGTCCATCAAAATGCTTGAAATGCAAGCTATTCTTGAAGGAATGCGAGCTTTACCTTCAGTTCGAGCGTCTCTACCAGACTTATTCATTTCCCCTGTCGTGGTAGAATCTGACGCTCTTGGAGTGAAAAAACACTTTTAA

Protein sequence

MDASWSDQRQWGGVGWILRDSIGSPICLGYWKIEDLRSIKMLEMQAILEGMRALPSVRASLPDLFISPVVVESDALGVKKHF

Homology

[Close]

BLAST of Lcy02g012480 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 2   DASWSDQRQWGGVGWILRDSIGSPICLGYWKIEDLRSIKMLEMQAILEGMRALPSVRASL 61
           DASWSD    GG+GWI+R   G  +  G   +E   ++K+LE  AILEG+R L ++    
Sbjct: 84  DASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGV-- 143

Query: 62  PDLFISPVVVESDALGVK 80
               + P+ +E+D+  V+
Sbjct: 144 ----LRPLHIETDSAEVE 155

[Close]

BLAST of Lcy02g012480 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.6e-05
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 2   DASWSDQRQWGGVGWILRDSIGSPICLGYWKIEDLRSIKMLEMQAILEGMRALPSVRASL 61
           DASWS++R+ GG+GWIL D  G  +  G  KI + + I  LE+  I+ G++ +       
Sbjct: 118 DASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSR-- 177

Query: 62  PDLFISPVVVESDALGV 79
                SP+ +ESD++ V
Sbjct: 178 -----SPIYLESDSVEV 187

[Close]

BLAST of Lcy02g012480 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 2   DASWSDQRQWGGVGWILRDSIGSPICLGYWKIEDLRSIKMLEMQAILEGMRALPSVRASL 61
           DASWSD    GG+GWI+R   G  +  G   +E   ++K+LE  AILEG+R L ++    
Sbjct: 84  DASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGV-- 143

Query: 62  PDLFISPVVVESDALGVK 80
               + P+ +E+D+  V+
Sbjct: 144 ----LRPLHIETDSAEVE 155

[Close]

BLAST of Lcy02g012480 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 2   DASWSDQRQWGGVGWILRDSIGSPICLGYWKIEDLRSIKMLEMQAILEGMRALPSVRASL 61
           DASWS++R+ GG+GWIL D  G  +  G  KI + + I  LE+  I+ G++ +       
Sbjct: 118 DASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFINMQSR-- 177

Query: 62  PDLFISPVVVESDALGV 79
                SP+ +ESD++ V
Sbjct: 178 -----SPIYLESDSVEV 187

The following BLAST results are available for this feature:

BLAST of Lcy02g012480 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g012480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	5.6e-05	37.18	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CQG0	9.6e-05	36.36	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Lcy02g012480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	1.2e-04	37.18	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143317.1	2.0e-04	36.36	uncharacterized protein LOC111013216 [Momordica charantia]	[more]

BLAST of Lcy02g012480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 2..75 e-value: 1.6E-7 score: 31.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g012480.1	Lcy02g012480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity