Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGATGACGAGATTATATGGAATTACGACCCTAGAAGCCAATTTTCTGTGAAGAGCACCTATCGGTTGGGTTGTCAGATAAACCAAAATTCACAAGCATCTCCATCAAATCACAAGTCTCAGGAAGTATTTTGGAAGAGTTTTTGGAAAACTAACCTCCCCTCTAAGGTTAAAATCTGCGGTTGGAAAGTTTACAACAATATCCTCCCAACTCTAGATAACCTGACCAAGTGGGGGATGGATGTTAATCCAATATGCTACCTGTGCAGGGAGAGACCAAAAACTACTACTCACCTATTCTGGCAATAACTAAAGGTTTATGGTCTAAATTATTTCCCCTTTCCAACTATGATCCTTGAATGGCAGGGACGGGTGGATGGTTGAGGACTTTTGTGAAAGCTATTGGATGCAGAACAAAAAGGGAACACTAGTGGATCACTGCCTTAGAAGAACTCTAATTTTGTGCTGGAAGATTTGGGCTTATCGAAATTCAATCGTGCATAATAATCAGATTCCCAACAAAGAAATATTGCAGACGCTAGTTAATAGTGCGATGACAGATTTAGGGGGAAACGATATTACTCACCAGGCGTCGACCTCTTCGAGTACAGGAATTTCTCCTCTTGGTAATCTTACGCTGCAAAGTTGGATCCCGATACCCAAAGGACTCTGGAAATTAAGCTGTGATGCTTCATGGTGTGAGGACCGTTTGTGCGGTGGTGTCGGCTGGATTCTCAGAGACTGGTTGGGGTGA
mRNA sequence
ATGGGTGATGACGAGATTATATGGAATTACGACCCTAGAAGCCAATTTTCTGTGAAGAGCACCTATCGGTTGGGTTGTCAGATAAACCAAAATTCACAAGCATCTCCATCAAATCACAAGTCTCAGGAAGTATTTTGGAAGAGTTTTTGGAAAACTAACCTCCCCTCTAAGAACAAAAAGGGAACACTAGTGGATCACTGCCTTAGAAGAACTCTAATTTTGTGCTGGAAGATTTGGGCTTATCGAAATTCAATCGTGCATAATAATCAGATTCCCAACAAAGAAATATTGCAGACGCTAGTTAATAGTGCGATGACAGATTTAGGGGGAAACGATATTACTCACCAGGCGTCGACCTCTTCGAGTACAGGAATTTCTCCTCTTGGTAATCTTACGCTGCAAAGTTGGATCCCGATACCCAAAGGACTCTGGAAATTAAGCTGTGATGCTTCATGGTGTGAGGACCGTTTGTGCGGTGGTGTCGGCTGGATTCTCAGAGACTGGTTGGGGTGA
Coding sequence (CDS)
ATGGGTGATGACGAGATTATATGGAATTACGACCCTAGAAGCCAATTTTCTGTGAAGAGCACCTATCGGTTGGGTTGTCAGATAAACCAAAATTCACAAGCATCTCCATCAAATCACAAGTCTCAGGAAGTATTTTGGAAGAGTTTTTGGAAAACTAACCTCCCCTCTAAGAACAAAAAGGGAACACTAGTGGATCACTGCCTTAGAAGAACTCTAATTTTGTGCTGGAAGATTTGGGCTTATCGAAATTCAATCGTGCATAATAATCAGATTCCCAACAAAGAAATATTGCAGACGCTAGTTAATAGTGCGATGACAGATTTAGGGGGAAACGATATTACTCACCAGGCGTCGACCTCTTCGAGTACAGGAATTTCTCCTCTTGGTAATCTTACGCTGCAAAGTTGGATCCCGATACCCAAAGGACTCTGGAAATTAAGCTGTGATGCTTCATGGTGTGAGGACCGTTTGTGCGGTGGTGTCGGCTGGATTCTCAGAGACTGGTTGGGGTGA
Protein sequence
MGDDEIIWNYDPRSQFSVKSTYRLGCQINQNSQASPSNHKSQEVFWKSFWKTNLPSKNKKGTLVDHCLRRTLILCWKIWAYRNSIVHNNQIPNKEILQTLVNSAMTDLGGNDITHQASTSSSTGISPLGNLTLQSWIPIPKGLWKLSCDASWCEDRLCGGVGWILRDWLG
Homology
BLAST of Lcy02g012440 vs. ExPASy TrEMBL
Match:
A0A6J5XPQ2 (RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35944 PE=4 SV=1)
HSP 1 Score: 82.0 bits (201), Expect = 2.6e-12
Identity = 60/220 (27.27%), Postives = 89/220 (40.45%), Query Frame = 0
Query: 4 DEIIWNYDPRSQFSVKSTYRLGCQINQNSQ------ASPSNHKSQEVFWKSFWKTNLPSK 63
D++IW++ Q++V+S+Y L + +N + + S SQ WKSFW + P K
Sbjct: 42 DKLIWHFSMHGQYTVRSSYELALHLQRNGELGHKGASEASGSYSQSSVWKSFWHADAPPK 101
Query: 64 NK----KG----TLVDHCLRR-----------------------TLIL------------ 123
K +G V H LRR T+I
Sbjct: 102 LKAFIWRGCSNILAVRHNLRRRPLQLDVNNLAAEDFISTWRYIMTMINSSEHAAEAIQWF 161
Query: 124 ---CWKIWAYRNSIVHNN-QIPNKEILQTLVNSAMTDLGGNDITHQASTSSSTGISPLGN 171
W+IW RNS+V + Q E + L+ ++ + P +
Sbjct: 162 VFGLWRIWKARNSVVFDGVQADPAEAVHLLLQQV------SEYRIAKQNLQPQPLQPASS 221
BLAST of Lcy02g012440 vs. ExPASy TrEMBL
Match:
A0A803NG99 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 53/170 (31.18%), Postives = 78/170 (45.88%), Query Frame = 0
Query: 3 DDEIIWNYDPRSQFSVKSTYRLGCQINQNSQASPSNHKSQEVFWKSFWKTNLPSKNKKGT 62
DD IW+Y P ++V+S Y L + +Q + SN SQE +WK FW LPSK
Sbjct: 887 DDNFIWHYTPTGVYTVQSGYHLAYSLATQNQTTGSN--SQEKWWKYFWSLQLPSKIPALV 946
Query: 63 LVDHCLRRTLILCWKIWAYRNSIVHNNQIPNKEILQTLVNSAMTDLGGNDITH--QASTS 122
+ H L + + + N +VH+ P K+ + S ++H QAS +
Sbjct: 947 VYVHVRGNLLDMRYSVVNTLNRVVHHK--PCKKPAEIFAGSMAY------LSHFSQASHT 1006
Query: 123 SSTGISPLGNLTLQSWIPIPKGLWKLSCDASWCEDRLCGGVGWILRDWLG 171
SS + WIP P GL KL+ DA+ + G G ++RD G
Sbjct: 1007 SSIVHNDPTVADHSPWIPPPPGLCKLNVDAAVISAQNKLGYGAVIRDHRG 1046
BLAST of Lcy02g012440 vs. ExPASy TrEMBL
Match:
Q8S5K1 (Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.23 PE=4 SV=2)
HSP 1 Score: 67.4 bits (163), Expect = 6.6e-08
Identity = 51/195 (26.15%), Postives = 77/195 (39.49%), Query Frame = 0
Query: 3 DDEIIWNYDPRSQFSVKSTYRLGCQINQNSQASPSNHKSQEVFWKSFWKTNLPSK----- 62
DD I W+ D +FSV+S Y L + + S S+ W + WK N P K
Sbjct: 1568 DDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPLS 1627
Query: 63 ---NKKGTLVDHCLRRT--------LILCWKIWAYRNSIVHNNQIPNKEILQTLVNSAMT 122
N ++ L ++ L++ W+IW RN IVH P + + + S +
Sbjct: 1628 NIRNGDPKVILDLLEQSQPEDQVMLLMVLWRIWHTRNEIVHGKPAPGMLVSKRFIESYVL 1687
Query: 123 DLGGNDITHQASTSSSTGISPLGNLTLQS-----------WIPIPKGLWKLSCDASWCED 171
L QAS + + L S W+ G KL+ D S+ E
Sbjct: 1688 SLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPDKWLKPLPGSMKLNVDGSFQES 1747
BLAST of Lcy02g012440 vs. ExPASy TrEMBL
Match:
Q33AJ4 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g09610 PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.6e-08
Identity = 51/195 (26.15%), Postives = 77/195 (39.49%), Query Frame = 0
Query: 3 DDEIIWNYDPRSQFSVKSTYRLGCQINQNSQASPSNHKSQEVFWKSFWKTNLPSK----- 62
DD I W+ D +FSV+S Y L + + S S+ W + WK N P K
Sbjct: 1533 DDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPLS 1592
Query: 63 ---NKKGTLVDHCLRRT--------LILCWKIWAYRNSIVHNNQIPNKEILQTLVNSAMT 122
N ++ L ++ L++ W+IW RN IVH P + + + S +
Sbjct: 1593 NIRNGDPKVILDLLEQSQPEDQVMLLMVLWRIWHTRNEIVHGKPAPGMLVSKRFIESYVL 1652
Query: 123 DLGGNDITHQASTSSSTGISPLGNLTLQS-----------WIPIPKGLWKLSCDASWCED 171
L QAS + + L S W+ G KL+ D S+ E
Sbjct: 1653 SLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPDKWLKPLPGSMKLNVDGSFQES 1712
BLAST of Lcy02g012440 vs. ExPASy TrEMBL
Match:
A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 5.6e-07
Identity = 35/101 (34.65%), Postives = 51/101 (50.50%), Query Frame = 0
Query: 72 LILCWKIWAYRNSIVHNN-QIPNKEILQTLVNSAM----TDLGGNDITHQASTSSSTGIS 131
L+L W IW YRN IVH+ + P + ++ S + T+LGGN + + G
Sbjct: 20 LVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGNLNMEDKNLPRTVG-- 79
Query: 132 PLGNLTLQSWIPIPKGLWKLSCDASWCEDRLCGGVGWILRD 168
W P + LWKL+ DA+W + GG+GWI+RD
Sbjct: 80 ---------WTPPAQHLWKLNVDATWMDSLHAGGLGWIVRD 109
BLAST of Lcy02g012440 vs. NCBI nr
Match:
CAB4313148.1 (unnamed protein product [Prunus armeniaca])
HSP 1 Score: 82.0 bits (201), Expect = 5.3e-12
Identity = 60/220 (27.27%), Postives = 89/220 (40.45%), Query Frame = 0
Query: 4 DEIIWNYDPRSQFSVKSTYRLGCQINQNSQ------ASPSNHKSQEVFWKSFWKTNLPSK 63
D++IW++ Q++V+S+Y L + +N + + S SQ WKSFW + P K
Sbjct: 42 DKLIWHFSMHGQYTVRSSYELALHLQRNGELGHKGASEASGSYSQSSVWKSFWHADAPPK 101
Query: 64 NK----KG----TLVDHCLRR-----------------------TLIL------------ 123
K +G V H LRR T+I
Sbjct: 102 LKAFIWRGCSNILAVRHNLRRRPLQLDVNNLAAEDFISTWRYIMTMINSSEHAAEAIQWF 161
Query: 124 ---CWKIWAYRNSIVHNN-QIPNKEILQTLVNSAMTDLGGNDITHQASTSSSTGISPLGN 171
W+IW RNS+V + Q E + L+ ++ + P +
Sbjct: 162 VFGLWRIWKARNSVVFDGVQADPAEAVHLLLQQV------SEYRIAKQNLQPQPLQPASS 221
BLAST of Lcy02g012440 vs. NCBI nr
Match:
XP_030503504.1 (uncharacterized protein LOC115718825 [Cannabis sativa])
HSP 1 Score: 69.3 bits (168), Expect = 3.6e-08
Identity = 53/170 (31.18%), Postives = 78/170 (45.88%), Query Frame = 0
Query: 3 DDEIIWNYDPRSQFSVKSTYRLGCQINQNSQASPSNHKSQEVFWKSFWKTNLPSKNKKGT 62
DD IW+Y P ++V+S Y L + +Q + SN SQE +WK FW LPSK
Sbjct: 92 DDNFIWHYTPTGVYTVQSGYHLAYSLATQNQTTGSN--SQEKWWKYFWSLQLPSKIPALV 151
Query: 63 LVDHCLRRTLILCWKIWAYRNSIVHNNQIPNKEILQTLVNSAMTDLGGNDITH--QASTS 122
+ H L + + + N +VH+ P K+ + S ++H QAS +
Sbjct: 152 VYVHVRGNLLDMRYSVVNTLNRVVHHK--PCKKPAEIFAGSMAY------LSHFSQASHT 211
Query: 123 SSTGISPLGNLTLQSWIPIPKGLWKLSCDASWCEDRLCGGVGWILRDWLG 171
SS + WIP P GL KL+ DA+ + G G ++RD G
Sbjct: 212 SSIVHNDPTVADHSPWIPPPPGLCKLNVDAAVISAQNKLGYGAVIRDHRG 251
BLAST of Lcy02g012440 vs. NCBI nr
Match:
XP_030936331.1 (uncharacterized protein LOC115961495 [Quercus lobata])
HSP 1 Score: 68.9 bits (167), Expect = 4.7e-08
Identity = 48/191 (25.13%), Postives = 84/191 (43.98%), Query Frame = 0
Query: 4 DEIIWNYDPRSQFSVKSTYRLGCQINQNSQASPSNHKSQEVFWKSFWKTNLPSKNK---- 63
D+IIW P F+ KS Y+L N + A S+ ++Q +FW+S W+ +P+K K
Sbjct: 173 DKIIWGLTPSGMFTTKSAYKLLVSCNSTNLAGTSSSENQRLFWRSLWQLRVPNKLKHFSW 232
Query: 64 ---------KGTLV-----------DHCLRRTLILCWKIWAYRNSIVHNNQIPNKEILQT 123
LV D+ ++ +I+ W +W RN++ N Q+ + +
Sbjct: 233 RACNDALPTMTNLVMRHIATTEVKEDYRVKIFVIIAWMLWNRRNALRLNLQVQPLNRISS 292
Query: 124 LVNSAMTDLGGNDITHQASTSSSTGISPLGNLTLQSWIPIPKGLWKLSCDASWCEDRLCG 171
L S + + D+ Q T++ + Q W P + +K++ DA +
Sbjct: 293 LAGSYLQEF--LDVQDQTPTATDPSLP-------QQWQPPDENKFKVNFDAVVFKSCNQA 352
BLAST of Lcy02g012440 vs. NCBI nr
Match:
ABB46931.2 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])
HSP 1 Score: 67.4 bits (163), Expect = 1.4e-07
Identity = 51/195 (26.15%), Postives = 77/195 (39.49%), Query Frame = 0
Query: 3 DDEIIWNYDPRSQFSVKSTYRLGCQINQNSQASPSNHKSQEVFWKSFWKTNLPSK----- 62
DD I W+ D +FSV+S Y L + + S S+ W + WK N P K
Sbjct: 1533 DDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPLS 1592
Query: 63 ---NKKGTLVDHCLRRT--------LILCWKIWAYRNSIVHNNQIPNKEILQTLVNSAMT 122
N ++ L ++ L++ W+IW RN IVH P + + + S +
Sbjct: 1593 NIRNGDPKVILDLLEQSQPEDQVMLLMVLWRIWHTRNEIVHGKPAPGMLVSKRFIESYVL 1652
Query: 123 DLGGNDITHQASTSSSTGISPLGNLTLQS-----------WIPIPKGLWKLSCDASWCED 171
L QAS + + L S W+ G KL+ D S+ E
Sbjct: 1653 SLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPDKWLKPLPGSMKLNVDGSFQES 1712
BLAST of Lcy02g012440 vs. NCBI nr
Match:
AAM01179.2 (Putative retroelement [Oryza sativa Japonica Group])
HSP 1 Score: 67.4 bits (163), Expect = 1.4e-07
Identity = 51/195 (26.15%), Postives = 77/195 (39.49%), Query Frame = 0
Query: 3 DDEIIWNYDPRSQFSVKSTYRLGCQINQNSQASPSNHKSQEVFWKSFWKTNLPSK----- 62
DD I W+ D +FSV+S Y L + + S S+ W + WK N P K
Sbjct: 1568 DDFIAWHPDKLGRFSVRSAYHLAVALAHVDEGSSSSGNGNSRAWNALWKCNAPQKLNPLS 1627
Query: 63 ---NKKGTLVDHCLRRT--------LILCWKIWAYRNSIVHNNQIPNKEILQTLVNSAMT 122
N ++ L ++ L++ W+IW RN IVH P + + + S +
Sbjct: 1628 NIRNGDPKVILDLLEQSQPEDQVMLLMVLWRIWHTRNEIVHGKPAPGMLVSKRFIESYVL 1687
Query: 123 DLGGNDITHQASTSSSTGISPLGNLTLQS-----------WIPIPKGLWKLSCDASWCED 171
L QAS + + L S W+ G KL+ D S+ E
Sbjct: 1688 SLAEIKQHPQASPEKGKHVVDVVQKKLHSIKRSREPVPDKWLKPLPGSMKLNVDGSFQES 1747
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J5XPQ2 | 2.6e-12 | 27.27 | RNase H domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCU... | [more] |
| A0A803NG99 | 1.7e-08 | 31.18 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
| Q8S5K1 | 6.6e-08 | 26.15 | Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.... | [more] |
| Q33AJ4 | 6.6e-08 | 26.15 | Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ... | [more] |
| A0A6J1D4B6 | 5.6e-07 | 34.65 | uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| CAB4313148.1 | 5.3e-12 | 27.27 | unnamed protein product [Prunus armeniaca] | [more] |
| XP_030503504.1 | 3.6e-08 | 31.18 | uncharacterized protein LOC115718825 [Cannabis sativa] | [more] |
| XP_030936331.1 | 4.7e-08 | 25.13 | uncharacterized protein LOC115961495 [Quercus lobata] | [more] |
| ABB46931.2 | 1.4e-07 | 26.15 | retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] | [more] |
| AAM01179.2 | 1.4e-07 | 26.15 | Putative retroelement [Oryza sativa Japonica Group] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
