Lcy02g012340 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g012340
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	WD_REPEATS_REGION domain-containing protein
Location	Chr02: 37288506 .. 37288826 (-)
RNA-Seq Expression	Lcy02g012340
Synteny	Lcy02g012340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGAACTTGTTACAGGGACGAATACTCCCAGCTAAAGGCATACTTAGAGGTGAAAATTAAAGCTCTCGAATTGGCTATATGTGAGAACCAAGAACTTAAAACACGGTTTGAAGCAATGACAGTTAAAGCTAAGGATGCAGAGGCTGAAAATAAGATGTTGGTTGACTGGTGGAAGCTTCAAAAGATGCAGGATGCAGAGGCTGAAAATAAGATGTTGGTTGACTGGTGGAAGCTTCAAAAGATGCAGGATGCAGAACCTCTCAATGAGGTTCATAATACTTCAAATCGATGTTGGAAAGTCTCCCACAATCATTGA

mRNA sequence

ATGTTGGGAACTTGTTACAGGGACGAATACTCCCAGCTAAAGGCATACTTAGAGGTGAAAATTAAAGCTCTCGAATTGGCTATATGTGAGAACCAAGAACTTAAAACACGGTTTGAAGCAATGACAGTTAAAGCTAAGGATGCAGAGGCTGAAAATAAGATGTTGGTTGACTGGTGGAAGCTTCAAAAGATGCAGGATGCAGAGGCTGAAAATAAGATGTTGGTTGACTGGTGGAAGCTTCAAAAGATGCAGGATGCAGAACCTCTCAATGAGGTTCATAATACTTCAAATCGATGTTGGAAAGTCTCCCACAATCATTGA

Coding sequence (CDS)

ATGTTGGGAACTTGTTACAGGGACGAATACTCCCAGCTAAAGGCATACTTAGAGGTGAAAATTAAAGCTCTCGAATTGGCTATATGTGAGAACCAAGAACTTAAAACACGGTTTGAAGCAATGACAGTTAAAGCTAAGGATGCAGAGGCTGAAAATAAGATGTTGGTTGACTGGTGGAAGCTTCAAAAGATGCAGGATGCAGAGGCTGAAAATAAGATGTTGGTTGACTGGTGGAAGCTTCAAAAGATGCAGGATGCAGAACCTCTCAATGAGGTTCATAATACTTCAAATCGATGTTGGAAAGTCTCCCACAATCATTGA

Protein sequence

MLGTCYRDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQDAEAENKMLVDWWKLQKMQDAEPLNEVHNTSNRCWKVSHNH

Homology

[Close]

BLAST of Lcy02g012340 vs. ExPASy Swiss-Prot
Match: Q6NNP0 (Autophagy-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=ATG16 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-09
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           R++ ++L+  LE K K +++ I EN E++++ E MT + + AE ENKML+D W LQKMQD
Sbjct: 104 REDCTRLQEELEEKTKTVDVLIAENLEIRSQLEEMTSRVQKAETENKMLIDRWMLQKMQD 163

Query: 67  AEAENK 73
           AE  N+
Sbjct: 164 AERLNE 169

[Close]

BLAST of Lcy02g012340 vs. ExPASy TrEMBL
Match: A0A5D3BHA5 (Autophagy-related protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00860 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-18
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           RDE SQLKA LE+KIKALELA+CENQE+KT+ EAMTVKAK+AEAENKMLVD W LQKMQD
Sbjct: 106 RDECSQLKADLEIKIKALELALCENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQD 165

Query: 67  AEAENK 73
           AE  N+
Sbjct: 166 AERLNE 171

[Close]

BLAST of Lcy02g012340 vs. ExPASy TrEMBL
Match: A0A1S3CM27 (autophagy-related protein 16 OS=Cucumis melo OX=3656 GN=LOC103502353 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-18
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           RDE SQLKA LE+KIKALELA+CENQE+KT+ EAMTVKAK+AEAENKMLVD W LQKMQD
Sbjct: 106 RDECSQLKADLEIKIKALELALCENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQD 165

Query: 67  AEAENK 73
           AE  N+
Sbjct: 166 AERLNE 171

[Close]

BLAST of Lcy02g012340 vs. ExPASy TrEMBL
Match: A0A0A0LP08 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G002820 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.7e-18
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           RDE SQLKA LE+K+KALELA+CENQE+KT+ EAMTVKAK+AEAENKMLVD W LQKMQD
Sbjct: 106 RDECSQLKADLEIKLKALELALCENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQD 165

Query: 67  AEAENK 73
           AE  N+
Sbjct: 166 AERLNE 171

[Close]

BLAST of Lcy02g012340 vs. ExPASy TrEMBL
Match: A0A6J1BZV5 (autophagy-related protein 16 OS=Momordica charantia OX=3673 GN=LOC111007200 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           RDE SQLKA LE+KIKALELAICENQE+K + EAMTVKAK+AEAENKMLVD W LQKMQD
Sbjct: 106 RDECSQLKADLEMKIKALELAICENQEIKAQLEAMTVKAKNAEAENKMLVDRWMLQKMQD 165

Query: 67  AEAENK 73
           AE  N+
Sbjct: 166 AERLNE 171

[Close]

BLAST of Lcy02g012340 vs. ExPASy TrEMBL
Match: A0A6P9E7C0 (autophagy-related protein 16 isoform X1 OS=Juglans regia OX=51240 GN=LOC108980472 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.7e-15
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           RDE SQLKA LE KIKALEL ICEN +LK + E +T+KAK+AEAENKMLVD W LQKMQD
Sbjct: 123 RDECSQLKADLEEKIKALELLICENHQLKAQLEEITIKAKNAEAENKMLVDRWMLQKMQD 182

Query: 67  AEAENK 73
           AE  N+
Sbjct: 183 AERLNE 188

[Close]

BLAST of Lcy02g012340 vs. NCBI nr
Match: XP_008464485.1 (PREDICTED: autophagy-related protein 16 [Cucumis melo] >KAA0057800.1 autophagy-related protein 16 [Cucumis melo var. makuwa] >TYJ98484.1 autophagy-related protein 16 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-18
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           RDE SQLKA LE+KIKALELA+CENQE+KT+ EAMTVKAK+AEAENKMLVD W LQKMQD
Sbjct: 106 RDECSQLKADLEIKIKALELALCENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQD 165

Query: 67  AEAENK 73
           AE  N+
Sbjct: 166 AERLNE 171

[Close]

BLAST of Lcy02g012340 vs. NCBI nr
Match: XP_011653271.1 (autophagy-related protein 16 [Cucumis sativus] >KGN63513.1 hypothetical protein Csa_013439 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           RDE SQLKA LE+K+KALELA+CENQE+KT+ EAMTVKAK+AEAENKMLVD W LQKMQD
Sbjct: 106 RDECSQLKADLEIKLKALELALCENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQD 165

Query: 67  AEAENK 73
           AE  N+
Sbjct: 166 AERLNE 171

[Close]

BLAST of Lcy02g012340 vs. NCBI nr
Match: XP_022135166.1 (autophagy-related protein 16 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-17
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           RDE SQLKA LE+KIKALELAICENQE+K + EAMTVKAK+AEAENKMLVD W LQKMQD
Sbjct: 106 RDECSQLKADLEMKIKALELAICENQEIKAQLEAMTVKAKNAEAENKMLVDRWMLQKMQD 165

Query: 67  AEAENK 73
           AE  N+
Sbjct: 166 AERLNE 171

[Close]

BLAST of Lcy02g012340 vs. NCBI nr
Match: XP_038879335.1 (autophagy-related protein 16 [Benincasa hispida])

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           R+E  QLKA LE+KIKALELAI ENQE+KT+ EAMTVKAK+AEAENKMLVD W LQKMQD
Sbjct: 106 REECFQLKADLEIKIKALELAIYENQEIKTQLEAMTVKAKNAEAENKMLVDRWMLQKMQD 165

Query: 67  AEAENK 73
           AE  N+
Sbjct: 166 AERLNE 171

[Close]

BLAST of Lcy02g012340 vs. NCBI nr
Match: XP_040986635.1 (autophagy-related protein 16 isoform X1 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-15
Identity = 49/66 (74.24%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           RDE SQLKA LE KIKALEL ICEN +LK + E MT+KAK+AEAENKMLVD W LQKMQD
Sbjct: 104 RDECSQLKADLEEKIKALELLICENHQLKAQLEEMTIKAKNAEAENKMLVDRWMLQKMQD 163

Query: 67  AEAENK 73
           AE  N+
Sbjct: 164 AERLNE 169

[Close]

BLAST of Lcy02g012340 vs. TAIR 10
Match: AT5G50230.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-10
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 0


Query: 7   RDEYSQLKAYLEVKIKALELAICENQELKTRFEAMTVKAKDAEAENKMLVDWWKLQKMQD 66
           R++ ++L+  LE K K +++ I EN E++++ E MT + + AE ENKML+D W LQKMQD
Sbjct: 104 REDCTRLQEELEEKTKTVDVLIAENLEIRSQLEEMTSRVQKAETENKMLIDRWMLQKMQD 163

Query: 67  AEAENK 73
           AE  N+
Sbjct: 164 AERLNE 169

The following BLAST results are available for this feature:

BLAST of Lcy02g012340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNP0	3.6e-09	46.97	Autophagy-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=ATG16 PE=1 SV=1	[more]

BLAST of Lcy02g012340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BHA5	3.4e-18	80.30	Autophagy-related protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CM27	3.4e-18	80.30	autophagy-related protein 16 OS=Cucumis melo OX=3656 GN=LOC103502353 PE=4 SV=1	[more]
A0A0A0LP08	5.7e-18	78.79	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A6J1BZV5	1.3e-17	80.30	autophagy-related protein 16 OS=Momordica charantia OX=3673 GN=LOC111007200 PE=4...	[more]
A0A6P9E7C0	7.7e-15	72.73	autophagy-related protein 16 isoform X1 OS=Juglans regia OX=51240 GN=LOC10898047...	[more]

BLAST of Lcy02g012340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464485.1	6.9e-18	80.30	PREDICTED: autophagy-related protein 16 [Cucumis melo] >KAA0057800.1 autophagy-r...	[more]
XP_011653271.1	1.2e-17	78.79	autophagy-related protein 16 [Cucumis sativus] >KGN63513.1 hypothetical protein ...	[more]
XP_022135166.1	2.6e-17	80.30	autophagy-related protein 16 [Momordica charantia]	[more]
XP_038879335.1	1.1e-15	77.27	autophagy-related protein 16 [Benincasa hispida]	[more]
XP_040986635.1	5.5e-15	74.24	autophagy-related protein 16 isoform X1 [Juglans microcarpa x Juglans regia]	[more]

BLAST of Lcy02g012340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50230.1	2.5e-10	46.97	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 31..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g012340.1	Lcy02g012340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000045	autophagosome assembly
cellular_component	GO:0000421	autophagosome membrane