Lcy02g012160 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g012160
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CCHC-type domain-containing protein
Location	Chr02: 36841016 .. 36841720 (-)
RNA-Seq Expression	Lcy02g012160
Synteny	Lcy02g012160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGACAACCTGTGAGCAAGGACGGCAGCTACATGCTGCAAACAGGATCCCTGAGTGATCAAGACAACGGTGAAGAAGATACAAACAAAAGCATGGATACACAGGACACTGAGATGGAAATGGAAGCTGACAAAGCCACAGAAAAACCAAAAAATGTTGAAGAAGAGGTGGCAGACAAACTCGAAAAAATGAAGATAACAAGCGCAGAGAGACCTAAAGTTGTGGCCTTTGAAGATGACGACCTCGAGGAAGCGACAGAAGATCTCCAGGGGGCAGTGCTGTGCAGAGTCATCACTACAAAACTTATTAATCCGAAAATGTTCAAAACCTTCATGCCAAAAATCTGGAATAAGGAAGGAATAGTGCGTATAAAGCCGAAGGGTAGAAACACCTTCTTATGCGAGTTTAACAACCCTCATGAGAAGGAAAGAATAAAAAAAGGTGGGCCTTGGAATTATGACAAAGCTCTTATGGTGATAGAAGAAACACAAGGAGCAAGTAGGATTTCAACAACGTCTTTTAGGTCTGTAAGCTTTTGGATTCACATACATGACTTACCTATGGTTTGTCATCGCAGGAAATGGGCGATACAACTGGGCAACTCTATTGGAGAATTTGAAGATGTGGACCTCGAGGAAGAAGGAGGCAGTGGGAAAATACCCTGCGAATTCTGGTCAAAATTGATATCTCGCAACCGCTGA

mRNA sequence

ATGGAGGGACAACCTGTGAGCAAGGACGGCAGCTACATGCTGCAAACAGGATCCCTGAGTGATCAAGACAACGGTGAAGAAGATACAAACAAAAGCATGGATACACAGGACACTGAGATGGAAATGGAAGCTGACAAAGCCACAGAAAAACCAAAAAATGTTGAAGAAGAGGTGGCAGACAAACTCGAAAAAATGAAGATAACAAGCGCAGAGAGACCTAAAGTTGTGGCCTTTGAAGATGACGACCTCGAGGAAGCGACAGAAGATCTCCAGGGGGCAGTGCTGTGCAGAGTCATCACTACAAAACTTATTAATCCGAAAATGTTCAAAACCTTCATGCCAAAAATCTGGAATAAGGAAGGAATAGTGCGTATAAAGCCGAAGGGTAGAAACACCTTCTTATGCGAGTTTAACAACCCTCATGAGAAGGAAAGAATAAAAAAAGGTGGGCCTTGGAATTATGACAAAGCTCTTATGGTGATAGAAGAAACACAAGGAGCAAGTAGGATTTCAACAACGTCTTTTAGGTCTGTAAGCTTTTGGATTCACATACATGACTTACCTATGGTTTGTCATCGCAGGAAATGGGCGATACAACTGGGCAACTCTATTGGAGAATTTGAAGATGTGGACCTCGAGGAAGAAGGAGGCAGTGGGAAAATACCCTGCGAATTCTGGTCAAAATTGATATCTCGCAACCGCTGA

Coding sequence (CDS)

ATGGAGGGACAACCTGTGAGCAAGGACGGCAGCTACATGCTGCAAACAGGATCCCTGAGTGATCAAGACAACGGTGAAGAAGATACAAACAAAAGCATGGATACACAGGACACTGAGATGGAAATGGAAGCTGACAAAGCCACAGAAAAACCAAAAAATGTTGAAGAAGAGGTGGCAGACAAACTCGAAAAAATGAAGATAACAAGCGCAGAGAGACCTAAAGTTGTGGCCTTTGAAGATGACGACCTCGAGGAAGCGACAGAAGATCTCCAGGGGGCAGTGCTGTGCAGAGTCATCACTACAAAACTTATTAATCCGAAAATGTTCAAAACCTTCATGCCAAAAATCTGGAATAAGGAAGGAATAGTGCGTATAAAGCCGAAGGGTAGAAACACCTTCTTATGCGAGTTTAACAACCCTCATGAGAAGGAAAGAATAAAAAAAGGTGGGCCTTGGAATTATGACAAAGCTCTTATGGTGATAGAAGAAACACAAGGAGCAAGTAGGATTTCAACAACGTCTTTTAGGTCTGTAAGCTTTTGGATTCACATACATGACTTACCTATGGTTTGTCATCGCAGGAAATGGGCGATACAACTGGGCAACTCTATTGGAGAATTTGAAGATGTGGACCTCGAGGAAGAAGGAGGCAGTGGGAAAATACCCTGCGAATTCTGGTCAAAATTGATATCTCGCAACCGCTGA

Protein sequence

MEGQPVSKDGSYMLQTGSLSDQDNGEEDTNKSMDTQDTEMEMEADKATEKPKNVEEEVADKLEKMKITSAERPKVVAFEDDDLEEATEDLQGAVLCRVITTKLINPKMFKTFMPKIWNKEGIVRIKPKGRNTFLCEFNNPHEKERIKKGGPWNYDKALMVIEETQGASRISTTSFRSVSFWIHIHDLPMVCHRRKWAIQLGNSIGEFEDVDLEEEGGSGKIPCEFWSKLISRNR

Homology

[Close]

BLAST of Lcy02g012160 vs. ExPASy TrEMBL
Match: A0A5C7IHI0 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_003470 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-21
Identity = 47/136 (34.56%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 85  EATEDLQGAVLCRVITTKLINPKMFKTFMPKIWNKEGIVRIKPKGRNTFLCEFNNPHEKE 144
           +  ED+   ++ +V++ K +N + FKT + ++W+  G V I+  G NTF+  FNNP +++
Sbjct: 32  DGVEDVDHCLVGKVLSGKRVNREAFKTVIEQLWSPFGNVEIEVVGDNTFMFYFNNPEDRD 91

Query: 145 RIKKGGPWNYDKALMVIEETQGASRISTTSFRSVSFWIHIHDLPMVCHRRKWAIQLGNSI 204
           RI + GPW++D++L+V+E+ +G   IS   F    FW+ IHD+P++C  ++ A  L   I
Sbjct: 92  RIWQRGPWHFDRSLIVLEKPEGMGDISQLCFNKAEFWVQIHDIPIMCMNKRMAKWLAEQI 151

Query: 205 GEFEDVDLEEEGGSGK 221
           G   ++ +E     GK
Sbjct: 152 GRVVEIPMESRECWGK 167

[Close]

BLAST of Lcy02g012160 vs. ExPASy TrEMBL
Match: A0A5C7I1Z5 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010517 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-21
Identity = 48/136 (35.29%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 85  EATEDLQGAVLCRVITTKLINPKMFKTFMPKIWNKEGIVRIKPKGRNTFLCEFNNPHEKE 144
           +  ED+   ++ +V++++ +N + FK+ + ++W+  G V I+  G N F+  FNNP +++
Sbjct: 32  DGVEDVNHYLVGKVLSSRRVNREAFKSIIEQLWSPFGTVDIEVVGENIFMFYFNNPIDRD 91

Query: 145 RIKKGGPWNYDKALMVIEETQGASRISTTSFRSVSFWIHIHDLPMVCHRRKWAIQLGNSI 204
           RI   GPW++D++L+V+E+ +G   IS  SF    FW+ IHD+P++C  R+ A  L   I
Sbjct: 92  RIWNRGPWHFDRSLIVLEKPEGTGNISQLSFSRAEFWVQIHDIPIMCMNRRMARWLAEQI 151

Query: 205 GEFEDVDLEEEGGSGK 221
           GE  D+  E     GK
Sbjct: 152 GEVIDIPTESMDCWGK 167

[Close]

BLAST of Lcy02g012160 vs. ExPASy TrEMBL
Match: A0A5C7HJF0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017649 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-21
Identity = 52/142 (36.62%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 79  EDDDLEEATEDLQGAVLCRVITTKLINPKMFKTFMPKIWNKEGIVRIKPKGRNTFLCEFN 138
           E D +E+A   L G    +V++++ +N + FK+ + ++W+  G V I+  G N F+  FN
Sbjct: 30  ERDGVEDANHCLVG----KVLSSRRVNREAFKSVIEQLWSPFGTVDIEVVGENIFMFYFN 89

Query: 139 NPHEKERIKKGGPWNYDKALMVIEETQGASRISTTSFRSVSFWIHIHDLPMVCHRRKWAI 198
           NP +++RI   GPW++D++L+V+E+ +G   IS  SF    FW+ IHD+P++C  R+ A 
Sbjct: 90  NPIDQDRIWNRGPWHFDRSLIVLEKPEGTGHISQFSFSRAKFWVQIHDIPIICMNRRMAR 149

Query: 199 QLGNSIGEFEDVDLEEEGGSGK 221
            L   IGE  D+  E     GK
Sbjct: 150 WLAEQIGEVIDIPTESRDCWGK 167

[Close]

BLAST of Lcy02g012160 vs. ExPASy TrEMBL
Match: A0A5C7HVP8 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012570 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.5e-21
Identity = 55/164 (33.54%), Postives = 95/164 (57.93%), Query Frame = 0


Query: 57  EVADKLEKMKITSAERPKVVAFEDDDLEEATEDLQGAVLCRVITTKLINPKMFKTFMPKI 116
           E+A   E + I   E  K+    +D      ED++  ++ +V++ K +N + FK+ + ++
Sbjct: 5   ELARLCENLSIKD-EDSKIHQIAEDVERVGVEDVEHCLVGKVLSGKRVNREDFKSVIKQL 64

Query: 117 WNKEGIVRIKPKGRNTFLCEFNNPHEKERIKKGGPWNYDKALMVIEETQGASRISTTSFR 176
           W+  G V I+  G N F+  FNN  ++ RI + GPW++D++L+V+E+ +G   IS  SF 
Sbjct: 65  WSPFGNVEIEVVGENIFMFYFNNLEDRNRIWQRGPWHFDRSLIVLEKPEGTGNISQLSFD 124

Query: 177 SVSFWIHIHDLPMVCHRRKWAIQLGNSIGEFEDVDLEEEGGSGK 221
            V FW+ IHD+P++C  R+ A  L   IG+F ++ +E     GK
Sbjct: 125 KVEFWVQIHDIPIMCMNRRTAKWLAEQIGKFIEIPMESRECWGK 167

[Close]

BLAST of Lcy02g012160 vs. ExPASy TrEMBL
Match: A0A314Z5A5 (DUF4283 domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_32588 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.2e-21
Identity = 58/161 (36.02%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 56  EEVADKLEKMKITSAERPKVVAFEDDDLEEATEDLQGAVLCRVITTKLINPKMFKTFMPK 115
           EEV    +K+ + + E   VV   + D ++  E L+ A++ +V+TT+L N + FK  M K
Sbjct: 2   EEVITSFDKVLLLTEEETDVVPIGEADEDDVHERLKTALVGKVLTTELFNREAFKQTMMK 61

Query: 116 IWNKEGIVRIKPKGRNTFLCEFNNPHEKERIKKGGPWNYDKALMVIEETQGASRISTTSF 175
           IWN    VR K  G N FL  F    ++ R+ + GPWN+DKAL+++EE  G    S    
Sbjct: 62  IWNTSREVRAKDLGENLFLFIFATELDRNRVLRNGPWNFDKALVLLEEPNGNIAPSRMLL 121

Query: 176 RSVSFWIHIHDLPMVCHRRKWAIQLGNSIGEFEDVDLEEEG 217
           +   FW+ IH++P++    +   Q+GN +GE  DV   +EG
Sbjct: 122 KFAEFWVQIHNVPLLGMTVQTGRQIGNCMGECIDVTQGQEG 162

[Close]

BLAST of Lcy02g012160 vs. NCBI nr
Match: TXG63523.1 (hypothetical protein EZV62_010517 [Acer yangbiense])

HSP 1 Score: 112.1 bits (279), Expect = 6.6e-21
Identity = 48/136 (35.29%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 85  EATEDLQGAVLCRVITTKLINPKMFKTFMPKIWNKEGIVRIKPKGRNTFLCEFNNPHEKE 144
           +  ED+   ++ +V++++ +N + FK+ + ++W+  G V I+  G N F+  FNNP +++
Sbjct: 32  DGVEDVNHYLVGKVLSSRRVNREAFKSIIEQLWSPFGTVDIEVVGENIFMFYFNNPIDRD 91

Query: 145 RIKKGGPWNYDKALMVIEETQGASRISTTSFRSVSFWIHIHDLPMVCHRRKWAIQLGNSI 204
           RI   GPW++D++L+V+E+ +G   IS  SF    FW+ IHD+P++C  R+ A  L   I
Sbjct: 92  RIWNRGPWHFDRSLIVLEKPEGTGNISQLSFSRAEFWVQIHDIPIMCMNRRMARWLAEQI 151

Query: 205 GEFEDVDLEEEGGSGK 221
           GE  D+  E     GK
Sbjct: 152 GEVIDIPTESMDCWGK 167

[Close]

BLAST of Lcy02g012160 vs. NCBI nr
Match: TXG68535.1 (hypothetical protein EZV62_003470 [Acer yangbiense])

HSP 1 Score: 112.1 bits (279), Expect = 6.6e-21
Identity = 47/136 (34.56%), Postives = 83/136 (61.03%), Query Frame = 0


Query: 85  EATEDLQGAVLCRVITTKLINPKMFKTFMPKIWNKEGIVRIKPKGRNTFLCEFNNPHEKE 144
           +  ED+   ++ +V++ K +N + FKT + ++W+  G V I+  G NTF+  FNNP +++
Sbjct: 32  DGVEDVDHCLVGKVLSGKRVNREAFKTVIEQLWSPFGNVEIEVVGDNTFMFYFNNPEDRD 91

Query: 145 RIKKGGPWNYDKALMVIEETQGASRISTTSFRSVSFWIHIHDLPMVCHRRKWAIQLGNSI 204
           RI + GPW++D++L+V+E+ +G   IS   F    FW+ IHD+P++C  ++ A  L   I
Sbjct: 92  RIWQRGPWHFDRSLIVLEKPEGMGDISQLCFNKAEFWVQIHDIPIMCMNKRMAKWLAEQI 151

Query: 205 GEFEDVDLEEEGGSGK 221
           G   ++ +E     GK
Sbjct: 152 GRVVEIPMESRECWGK 167

[Close]

BLAST of Lcy02g012160 vs. NCBI nr
Match: TXG56336.1 (hypothetical protein EZV62_017649 [Acer yangbiense])

HSP 1 Score: 112.1 bits (279), Expect = 6.6e-21
Identity = 52/142 (36.62%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 79  EDDDLEEATEDLQGAVLCRVITTKLINPKMFKTFMPKIWNKEGIVRIKPKGRNTFLCEFN 138
           E D +E+A   L G    +V++++ +N + FK+ + ++W+  G V I+  G N F+  FN
Sbjct: 30  ERDGVEDANHCLVG----KVLSSRRVNREAFKSVIEQLWSPFGTVDIEVVGENIFMFYFN 89

Query: 139 NPHEKERIKKGGPWNYDKALMVIEETQGASRISTTSFRSVSFWIHIHDLPMVCHRRKWAI 198
           NP +++RI   GPW++D++L+V+E+ +G   IS  SF    FW+ IHD+P++C  R+ A 
Sbjct: 90  NPIDQDRIWNRGPWHFDRSLIVLEKPEGTGHISQFSFSRAKFWVQIHDIPIICMNRRMAR 149

Query: 199 QLGNSIGEFEDVDLEEEGGSGK 221
            L   IGE  D+  E     GK
Sbjct: 150 WLAEQIGEVIDIPTESRDCWGK 167

[Close]

BLAST of Lcy02g012160 vs. NCBI nr
Match: TXG61207.1 (hypothetical protein EZV62_012570 [Acer yangbiense])

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-20
Identity = 55/164 (33.54%), Postives = 95/164 (57.93%), Query Frame = 0


Query: 57  EVADKLEKMKITSAERPKVVAFEDDDLEEATEDLQGAVLCRVITTKLINPKMFKTFMPKI 116
           E+A   E + I   E  K+    +D      ED++  ++ +V++ K +N + FK+ + ++
Sbjct: 5   ELARLCENLSIKD-EDSKIHQIAEDVERVGVEDVEHCLVGKVLSGKRVNREDFKSVIKQL 64

Query: 117 WNKEGIVRIKPKGRNTFLCEFNNPHEKERIKKGGPWNYDKALMVIEETQGASRISTTSFR 176
           W+  G V I+  G N F+  FNN  ++ RI + GPW++D++L+V+E+ +G   IS  SF 
Sbjct: 65  WSPFGNVEIEVVGENIFMFYFNNLEDRNRIWQRGPWHFDRSLIVLEKPEGTGNISQLSFD 124

Query: 177 SVSFWIHIHDLPMVCHRRKWAIQLGNSIGEFEDVDLEEEGGSGK 221
            V FW+ IHD+P++C  R+ A  L   IG+F ++ +E     GK
Sbjct: 125 KVEFWVQIHDIPIMCMNRRTAKWLAEQIGKFIEIPMESRECWGK 167

[Close]

BLAST of Lcy02g012160 vs. NCBI nr
Match: PQQ12378.1 (hypothetical protein Pyn_32588 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-20
Identity = 58/161 (36.02%), Postives = 90/161 (55.90%), Query Frame = 0


Query: 56  EEVADKLEKMKITSAERPKVVAFEDDDLEEATEDLQGAVLCRVITTKLINPKMFKTFMPK 115
           EEV    +K+ + + E   VV   + D ++  E L+ A++ +V+TT+L N + FK  M K
Sbjct: 2   EEVITSFDKVLLLTEEETDVVPIGEADEDDVHERLKTALVGKVLTTELFNREAFKQTMMK 61

Query: 116 IWNKEGIVRIKPKGRNTFLCEFNNPHEKERIKKGGPWNYDKALMVIEETQGASRISTTSF 175
           IWN    VR K  G N FL  F    ++ R+ + GPWN+DKAL+++EE  G    S    
Sbjct: 62  IWNTSREVRAKDLGENLFLFIFATELDRNRVLRNGPWNFDKALVLLEEPNGNIAPSRMLL 121

Query: 176 RSVSFWIHIHDLPMVCHRRKWAIQLGNSIGEFEDVDLEEEG 217
           +   FW+ IH++P++    +   Q+GN +GE  DV   +EG
Sbjct: 122 KFAEFWVQIHNVPLLGMTVQTGRQIGNCMGECIDVTQGQEG 162

The following BLAST results are available for this feature:

BLAST of Lcy02g012160 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g012160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7IHI0	3.2e-21	34.56	CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00347...	[more]
A0A5C7I1Z5	3.2e-21	35.29	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_010517 PE=4 SV=1	[more]
A0A5C7HJF0	3.2e-21	36.62	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017649 PE=4 SV=1	[more]
A0A5C7HVP8	5.5e-21	33.54	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_012570 PE=4 SV=1	[more]
A0A314Z5A5	7.2e-21	36.02	DUF4283 domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 ...	[more]

BLAST of Lcy02g012160 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG63523.1	6.6e-21	35.29	hypothetical protein EZV62_010517 [Acer yangbiense]	[more]
TXG68535.1	6.6e-21	34.56	hypothetical protein EZV62_003470 [Acer yangbiense]	[more]
TXG56336.1	6.6e-21	36.62	hypothetical protein EZV62_017649 [Acer yangbiense]	[more]
TXG61207.1	1.1e-20	33.54	hypothetical protein EZV62_012570 [Acer yangbiense]	[more]
PQQ12378.1	1.5e-20	36.02	hypothetical protein Pyn_32588 [Prunus yedoensis var. nudiflora]	[more]

BLAST of Lcy02g012160 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 83..216 e-value: 5.4E-24 score: 84.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g012160.1	Lcy02g012160.1	mRNA