Lcy02g011960 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g011960
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr02: 36267993 .. 36270007 (+)
RNA-Seq Expression	Lcy02g011960
Synteny	Lcy02g011960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCTGTTGGTGGGAAGACCAAATCGGGCTGTCTGTAGGTGGGCGCCGCAGGAGTTTGATGGGTTTAAGGTGAATGTTGATGCGGCCTTTTGTTTGGAGAGCGGAGCGGCTGGTGTAGACGTGGTATGTCGTGATTCTAGGGGGCAGGTGGGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGATTTTGCAGAAGGACTGGCGGCTTCCTTCGGTTTGAGGCTTGCGGTGGAGACGGCTACCAGACCTTTTGTGCTGGAGACAAATTTTATGCGGGTGTCCAAGCTTTTGCAGCGTGATGTGGAGGCGGTGTCGAAGTTGGGTATGCTGGTGGAGGATGCGGTGAGAGGCGTTCCAGCGGGGTGGTTTGTTGGCGGCAGCTTTACGTTCAGGGAAGGCAATCGTGTTGCCCATCGTTTGGCAAGGTTGGCGATGGAGGATAGGTGTGACCGAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAGGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGGAAGGTGATCAGTCTAAGCAGATCCAGCTGCCGCCCCAACCATTATGCCTATTCACAGGGAAGGTTTTCTGTTTCCCTTTATTTATCCTTATGTTTCGCATGCCTAGATTATTTTCTTGAGGATTTATATGTTTTAGGTTGGGGTGGAGATGGTGTAGGCTAGTGGGCTTTGGTTTGAGTCTGGATGCACCTGAGCACCAGGCTAATTTATTAATTTATACTTGTTATGCCGCTACTGTTTTGCTCTGCTTGATTGGGTTGAGGCCATGCATCTGAGCATTGGACCTGCTGTATTCCTTTGATTATTTATGGGTTTTGTTGAGATTAAGTGGTTAAGGACAACTGCTGTAGTTAATCATGTCGATGTCCTCGTGTGCACTTTGCTCTCTCTTATGCCTTTTTTGATAGTGAAGCATGATAACTTATTTTGGAAGTCTCCTGAGTTTCTCTTGAGATCTCCTGGCTTGTTTGAGTGTTTGAGGCCTCTTCCTTAGGTAGTCTTGAAGGCTCTGGTCTGTTTTATGAGTTCTATAGATCTGTTGTCACCCCAATAGGTGTAAGGTTTAGCAGGGATGTCTAAATGCTGCAATCTAGCGTGTGTGCTTTTCCTAGGTTAGGAAGGAAAAGAAAAGAATAGATCTGAAAAGAAAAGAAAATAAAAGAAAAGAAAATGAAAAGAGAAAGAATAGTAAGACCTGCTAAAATATGAGTGGTAAAACAAGGCGTGAGCATGCATGAGGATACTTAATTATGTTCCTTGTTTCCTCAATAAAAGCATGCTTGTAAGAGCCAGGGTAAATAAGGGGTAAAAAGAGCTGCCTGCAGTGTGTTCAGTTAGGCCAACCAAGAGTAAAAGTCGGGTTATGGGTCCCTACATTGTAGTGCGAAAGCTAGTACCCCGCCTTTAGAGTGTGGTAAAATTTGTAAATGAGTTTATCTCTTGCAGGCCCTGGGTTTGAGAATGCACCCTCTTTTGTGCCATTTAGCTTCTAGGCGAGACCTTAGTGCCAGTGTAGGGGGAAGATAGGTGGAGGAGTTTATAAGCCTTTCTTGGGCTGGTAGGGGCTGCTTTAGGTGAGGCTTTGCACTTGCACGCGAGTGAGGTTTCGTGGAGTTAACTTTGATCTGTTTCTAAATTTGTTAGCATGTTTTAACTCTTCTCTCAGGCATAAGTCTTAGCATCTGGAGCGCACGGACTTGATTATGATAAATTTCAGCTACTGAGTTCCTGCCATCTATATTAAATATATAACTCTAGGTTTGATTGAGATTTATCAGGTTGCATGTTGGGGTGTTTAGACAGGATTTCTGATGTGTGGTGTGAGTTTATGTGTGTTTATTTTCCTGTGCTAATTTGTTGTAATTGGATTGTGAACTTACAGGCCTAGAGTGCGAGGATGGGGGCTGGCTTGAGGCGGGAGTTAAGGCAGGCGGAGCAGAACTAGTTGCTAGTCTGGGTTTAAGATGA

mRNA sequence

ATGGACCTGTTGGTGGGAAGACCAAATCGGGCTGTCTGTAGGTGGGCGCCGCAGGAGTTTGATGGGTTTAAGGTGAATGTTGATGCGGCCTTTTGTTTGGAGAGCGGAGCGGCTGGTGTAGACGTGGTATGTCGTGATTCTAGGGGGCAGGTGGGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGATTTTGCAGAAGGACTGGCGGCTTCCTTCGGTTTGAGGCTTGCGGTGGAGACGGCTACCAGACCTTTTGTGCTGGAGACAAATTTTATGCGGGTGTCCAAGCTTTTGCAGCGTGATGTGGAGGCGGTGTCGAAGTTGGGTATGCTGGTGGAGGATGCGGTGAGAGGCGTTCCAGCGGGGTGGTTTGTTGGCGGCAGCTTTACGTTCAGGGAAGGCAATCGTGTTGCCCATCGTTTGGCAAGGTTGGCGATGGAGGATAGGTGTGACCGAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAGGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGGAAGTCTTGAAGGCTCTGGCCTAGAGTGCGAGGATGGGGGCTGGCTTGAGGCGGGAGTTAAGGCAGGCGGAGCAGAACTAGTTGCTAGTCTGGGTTTAAGATGA

Coding sequence (CDS)

ATGGACCTGTTGGTGGGAAGACCAAATCGGGCTGTCTGTAGGTGGGCGCCGCAGGAGTTTGATGGGTTTAAGGTGAATGTTGATGCGGCCTTTTGTTTGGAGAGCGGAGCGGCTGGTGTAGACGTGGTATGTCGTGATTCTAGGGGGCAGGTGGGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGATTTTGCAGAAGGACTGGCGGCTTCCTTCGGTTTGAGGCTTGCGGTGGAGACGGCTACCAGACCTTTTGTGCTGGAGACAAATTTTATGCGGGTGTCCAAGCTTTTGCAGCGTGATGTGGAGGCGGTGTCGAAGTTGGGTATGCTGGTGGAGGATGCGGTGAGAGGCGTTCCAGCGGGGTGGTTTGTTGGCGGCAGCTTTACGTTCAGGGAAGGCAATCGTGTTGCCCATCGTTTGGCAAGGTTGGCGATGGAGGATAGGTGTGACCGAGTATGGATGGAAGAAGGCCCTTCATGTGTTTTGGGCTTGTTGGCTGAGGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGGAAGTCTTGAAGGCTCTGGCCTAGAGTGCGAGGATGGGGGCTGGCTTGAGGCGGGAGTTAAGGCAGGCGGAGCAGAACTAGTTGCTAGTCTGGGTTTAAGATGA

Protein sequence

MDLLVGRPNRAVCRWAPQEFDGFKVNVDAAFCLESGAAGVDVVCRDSRGQVGFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGVPAGWFVGGSFTFREGNRVAHRLARLAMEDRCDRVWMEEGPSCVLGLLAEDGVHEFPQARQGSLEGSGLECEDGGWLEAGVKAGGAELVASLGLR

Homology

[Close]

BLAST of Lcy02g011960 vs. ExPASy TrEMBL
Match: A0A6J1C467 (uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007775 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.9e-21
Identity = 70/172 (40.70%), Postives = 98/172 (56.98%), Query Frame = 0


Query: 3   LLVGRPNRAVCRWAPQEFDGFKVNVDAAFCLESGAAGVDVVCRDSRGQVGFTASVFHENI 62
           LL GR  R V  W P     FKVNVDAAF   + +AG+D++ RDS   V  +A  F  ++
Sbjct: 62  LLDGRGGR-VSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHV 121

Query: 63  RDADFAEGLAASFGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGV 122
            D   AE LAA  G+ LA+E    PF +ET+  +V  LL+ D E  S++G+L   ++R +
Sbjct: 122 SDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLA-SSIRHI 181

Query: 123 PAGWFVGGSFTF--REGNRVAHRLARLAMEDRCDRVWMEEGPSCVLGLLAED 173
            +   +GG F+F  REGN  AH LAR+ M      VW+EE  S +  ++A D
Sbjct: 182 VSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVIAAD 231

[Close]

BLAST of Lcy02g011960 vs. ExPASy TrEMBL
Match: A0A6J1DBJ7 (uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018973 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.2e-17
Identity = 69/171 (40.35%), Postives = 89/171 (52.05%), Query Frame = 0


Query: 3   LLVGRPNRAVCRWAPQEFDGFKVNVDAAFCLESGAAGVDVVCRDSRGQVGFTASVFHENI 62
           L+V RP R V  W P      KVNVDAAF  ES  AGV V+ RDS G V  TA       
Sbjct: 93  LVVCRPPR-VAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARA 152

Query: 63  RDADFAEGLAASFGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGV 122
            D D+ EG A   G+ LAVE     F +ET+ +R+  LL  D    S++G+L       +
Sbjct: 153 SDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFL 212

Query: 123 PA-GWFVGGSFTFREGNRVAHRLARLAMEDRCDRVWMEEGPSCVLGLLAED 173
            +    V  SFT R GN  AH LA+LA+     ++W+EE P  +  +LA D
Sbjct: 213 SSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVD 262

[Close]

BLAST of Lcy02g011960 vs. ExPASy TrEMBL
Match: A0A6J1CIF1 (uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011237 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.4e-17
Identity = 55/154 (35.71%), Postives = 82/154 (53.25%), Query Frame = 0


Query: 9   NRAVCRWAPQEFDGFKVNVDAAFCLESGAAGVDVVCRDSRGQVGFTASVFHENIRDADFA 68
           N A   W P +   +K+N DA+F      AG+ ++ R+ RGQV  +A+ + ENI+  D A
Sbjct: 28  NTAEVLWLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMA 87

Query: 69  EGLAASFGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGVPAGWFV 128
           E + A  GL+LA +    P +LET+  R+  L  +  E +S+ G +V  A          
Sbjct: 88  EAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHA 147

Query: 129 GGSFTFREGNRVAHRLARLAMEDRCDRVWMEEGP 163
             +F  REGN+ AH LAR A+  R   +WME+ P
Sbjct: 148 SFNFVKREGNKAAHMLARRALLLREFSIWMEDWP 181

[Close]

BLAST of Lcy02g011960 vs. ExPASy TrEMBL
Match: A0A6J1CDQ4 (uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010533 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.6e-17
Identity = 57/139 (41.01%), Postives = 80/139 (57.55%), Query Frame = 0


Query: 15  WAPQEFDGFKVNVDAAFCLESGAAGVDV-VCRDSRGQVGFTASVFHENIRDADFAEGLAA 74
           W P E   FK+  DA+F      AG+ V + RD RGQV  +A+ + E++   D AE LAA
Sbjct: 90  WCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDHRGQVLASATKYLEHVASVDDAEALAA 149

Query: 75  SFGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGVPAGWFVGGSFT 134
             GLR+A+ET   P +LET+ +R+  L  RD E +SK G ++E     +     V  SFT
Sbjct: 150 VEGLRVAMETGISPILLETDSLRIYNLFARDKEGLSKTGSIIEYVKTHLATRLQVSYSFT 209

Query: 135 FREGNRVAHRLARLAMEDR 153
            R GN +AH LAR A++ +
Sbjct: 210 KRTGNTIAHLLARRALQSQ 228

[Close]

BLAST of Lcy02g011960 vs. ExPASy TrEMBL
Match: A0A803PAX6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 51/161 (31.68%), Postives = 85/161 (52.80%), Query Frame = 0


Query: 15   WAPQEFDGFKVNVDAAFCLESGAAGVDVVCRDSRGQVGFTASVFHENIRDADFAEGLAAS 74
            W P   + F +N DA+        G+ VV R ++G+V   A+     +   + AE LA  
Sbjct: 1165 WEPPPVNIFCINSDASVHYTEAEIGLGVVIRTNKGEVTAAATQHVNGVFSIELAEALAIQ 1224

Query: 75   FGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGVPAGWFV---GGS 134
             G+ LAV+T+  PF+++++ +RV + ++   +A +  G L+++     PA  FV     S
Sbjct: 1225 MGISLAVQTSAIPFIIQSDCLRVIEYIKGKFQAKTDWGALLDEV--SDPA--FVHCQAAS 1284

Query: 135  FTFREGNRVAHRLARLAMEDRCDRVWMEEGPSCVLGLLAED 173
             T R  NRVAH LA+LA+  +C+++W    PSC    +  D
Sbjct: 1285 HTSRNNNRVAHSLAKLAISSKCNKLWKGNYPSCASAYIMAD 1321

[Close]

BLAST of Lcy02g011960 vs. NCBI nr
Match: XP_022135942.1 (uncharacterized protein LOC111007775 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 8.0e-21
Identity = 70/172 (40.70%), Postives = 98/172 (56.98%), Query Frame = 0


Query: 3   LLVGRPNRAVCRWAPQEFDGFKVNVDAAFCLESGAAGVDVVCRDSRGQVGFTASVFHENI 62
           LL GR  R V  W P     FKVNVDAAF   + +AG+D++ RDS   V  +A  F  ++
Sbjct: 62  LLDGRGGR-VSAWCPPLAPFFKVNVDAAFKKGNFSAGLDILIRDSTVNVLLSAMCFITHV 121

Query: 63  RDADFAEGLAASFGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGV 122
            D   AE LAA  G+ LA+E    PF +ET+  +V  LL+ D E  S++G+L   ++R +
Sbjct: 122 SDVTLAECLAAQEGVCLAIEAGLIPFQIETDSSQVFNLLRTDCEDESEIGVLA-SSIRHI 181

Query: 123 PAGWFVGGSFTF--REGNRVAHRLARLAMEDRCDRVWMEEGPSCVLGLLAED 173
            +   +GG F+F  REGN  AH LAR+ M      VW+EE  S +  ++A D
Sbjct: 182 VSSLHIGGGFSFVNREGNSGAHTLARMGMVSESFHVWVEEWLSDLSEVIAAD 231

[Close]

BLAST of Lcy02g011960 vs. NCBI nr
Match: XP_022150944.1 (uncharacterized protein LOC111018973 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-17
Identity = 69/171 (40.35%), Postives = 89/171 (52.05%), Query Frame = 0


Query: 3   LLVGRPNRAVCRWAPQEFDGFKVNVDAAFCLESGAAGVDVVCRDSRGQVGFTASVFHENI 62
           L+V RP R V  W P      KVNVDAAF  ES  AGV V+ RDS G V  TA       
Sbjct: 93  LVVCRPPR-VAIWRPPAAPLLKVNVDAAFRKESFVAGVGVIIRDSTGLVYLTAIRLLARA 152

Query: 63  RDADFAEGLAASFGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGV 122
            D D+ EG A   G+ LAVE     F +ET+ +R+  LL  D    S++G+L       +
Sbjct: 153 SDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTTDCVDDSEVGVLCSVIKLFL 212

Query: 123 PA-GWFVGGSFTFREGNRVAHRLARLAMEDRCDRVWMEEGPSCVLGLLAED 173
            +    V  SFT R GN  AH LA+LA+     ++W+EE P  +  +LA D
Sbjct: 213 SSHAERVSFSFTHRNGNAXAHLLAQLALTSPHLQIWVEEWPDEISSVLAVD 262

[Close]

BLAST of Lcy02g011960 vs. NCBI nr
Match: XP_022140628.1 (uncharacterized protein LOC111011237 [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-17
Identity = 55/154 (35.71%), Postives = 82/154 (53.25%), Query Frame = 0


Query: 9   NRAVCRWAPQEFDGFKVNVDAAFCLESGAAGVDVVCRDSRGQVGFTASVFHENIRDADFA 68
           N A   W P +   +K+N DA+F      AG+ ++ R+ RGQV  +A+ + ENI+  D A
Sbjct: 28  NTAEVLWLPPDKRIYKINTDASFLASDQHAGLGIIIRNDRGQVMASATKYLENIQSVDMA 87

Query: 69  EGLAASFGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGVPAGWFV 128
           E + A  GL+LA +    P +LET+  R+  L  +  E +S+ G +V  A          
Sbjct: 88  EAIVAVEGLQLASKIGVNPVILETDSSRIFNLFSQPSEDLSETGEIVLKAKNFWTQSLHA 147

Query: 129 GGSFTFREGNRVAHRLARLAMEDRCDRVWMEEGP 163
             +F  REGN+ AH LAR A+  R   +WME+ P
Sbjct: 148 SFNFVKREGNKAAHMLARRALLLREFSIWMEDWP 181

[Close]

BLAST of Lcy02g011960 vs. NCBI nr
Match: XP_022139684.1 (uncharacterized protein LOC111010533 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 1.6e-16
Identity = 57/139 (41.01%), Postives = 80/139 (57.55%), Query Frame = 0


Query: 15  WAPQEFDGFKVNVDAAFCLESGAAGVDV-VCRDSRGQVGFTASVFHENIRDADFAEGLAA 74
           W P E   FK+  DA+F      AG+ V + RD RGQV  +A+ + E++   D AE LAA
Sbjct: 90  WCPAEEGVFKLKTDASFSSIDFNAGLGVIIIRDHRGQVLASATKYLEHVASVDDAEALAA 149

Query: 75  SFGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGVPAGWFVGGSFT 134
             GLR+A+ET   P +LET+ +R+  L  RD E +SK G ++E     +     V  SFT
Sbjct: 150 VEGLRVAMETGISPILLETDSLRIYNLFARDKEGLSKTGSIIEYVKTHLATRLQVSYSFT 209

Query: 135 FREGNRVAHRLARLAMEDR 153
            R GN +AH LAR A++ +
Sbjct: 210 KRTGNTIAHLLARRALQSQ 228

[Close]

BLAST of Lcy02g011960 vs. NCBI nr
Match: XP_021839114.1 (uncharacterized protein LOC110778879 [Spinacia oleracea])

HSP 1 Score: 90.1 bits (222), Expect = 2.5e-14
Identity = 53/163 (32.52%), Postives = 84/163 (51.53%), Query Frame = 0


Query: 10  RAVCRWAPQEFDGFKVNVDAAFCLESGAAGVDVVCRDSRGQVGFTASVFHENIRDADFAE 69
           R   +W P      KVN DAA  L+ G  G+ +V RD +G+V F +S         +  E
Sbjct: 19  RTNAKWEPPNQGVLKVNFDAAINLDYGRVGIGIVTRDMQGKVVFASSKTLLQRWGPEMGE 78

Query: 70  GLAASFGLRLAVETATRPFVLETNFMRVSKLLQRDVEAVSKLGMLVEDAVRGVPAGWFVG 129
             AA   +++A E   +  VLE +   + + L+   +  S + ++VEDA   +P+   + 
Sbjct: 79  AAAALVAIKVAKEQGWKDIVLEGDACTIIRALKGSQQRGSHVQLMVEDARSIMPSFDSIS 138

Query: 130 GSFTFREGNRVAHRLARLAMEDRCDRVWMEEGPSCVLGLLAED 173
            SF FRE + VAHRLA+ A+ +  D VW++ GP  +  +L  D
Sbjct: 139 FSFCFRECDEVAHRLAKQAVSNFSDEVWLDGGPLWISDVLVFD 181

The following BLAST results are available for this feature:

BLAST of Lcy02g011960 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g011960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C467	3.9e-21	40.70	uncharacterized protein LOC111007775 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1DBJ7	1.2e-17	40.35	uncharacterized protein LOC111018973 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1CIF1	3.4e-17	35.71	uncharacterized protein LOC111011237 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1CDQ4	7.6e-17	41.01	uncharacterized protein LOC111010533 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A803PAX6	2.1e-14	31.68	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lcy02g011960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135942.1	8.0e-21	40.70	uncharacterized protein LOC111007775 [Momordica charantia]	[more]
XP_022150944.1	2.4e-17	40.35	uncharacterized protein LOC111018973 [Momordica charantia]	[more]
XP_022140628.1	7.0e-17	35.71	uncharacterized protein LOC111011237 [Momordica charantia]	[more]
XP_022139684.1	1.6e-16	41.01	uncharacterized protein LOC111010533 [Momordica charantia]	[more]
XP_021839114.1	2.5e-14	32.52	uncharacterized protein LOC110778879 [Spinacia oleracea]	[more]

BLAST of Lcy02g011960 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 26..148 e-value: 4.9E-15 score: 55.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 22..152 e-value: 6.1E-7 score: 31.5
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 8..162
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 25..146 e-value: 8.56785E-12 score: 58.0944
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 24..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g011960.1	Lcy02g011960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity