Lcy02g011900 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g011900
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	BED-type domain-containing protein
Location	Chr02: 35917486 .. 35917971 (-)
RNA-Seq Expression	Lcy02g011900
Synteny	Lcy02g011900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAAAGCGTCATACGTGAAGTAGGGTCCGAGAAAGTGGTTCAAATTGTCACAGACAATGGGTCTGCTTTCAAGAAGGTGGGTGAGTTAATAATGAAAATTTTTAATATTTATTGGACCCCTTGTGCAGCGCATTGCATAGATTTAATGTTTGAAGATATAGGAAAACGAGAATCAGTAGGATCGGTTATTAGAGTTGCACGAGGGGTGACAAATTACATTTATAATCATGGATGGTTACTTAGTAAGATGCTCGAGATTTGTGAAGATGATATAATCCTACCTGGGAGCACTAGGTTTGCAACAAACTACCTTGCATTAAATAGCATGTTGAAAAAAAAGGCTGCATTAACACGATTATTCACTGATGATTCATGGAATAATGACAAGTTAAGTCAGACGGTTATAGGAAAAGAGATCGAGTCTCGTGTACTAAGTAACACATTTTGGGACAATGTAGAGGTCATAGTCCAAATTTTTTAG

mRNA sequence

ATGTTGAAAAGCGTCATACGTGAAGTAGGGTCCGAGAAAGTGGTTCAAATTGTCACAGACAATGGGTCTGCTTTCAAGAAGGTGGGTGAGTTAATAATGAAAATTTTTAATATTTATTGGACCCCTTGTGCAGCGCATTGCATAGATTTAATGTTTGAAGATATAGGAAAACGAGAATCAGTAGGATCGGTTATTAGAGTTGCACGAGGGGTGACAAATTACATTTATAATCATGGATGGTTACTTAGTAAGATGCTCGAGATTTGTGAAGATGATATAATCCTACCTGGGAGCACTAGGTTTGCAACAAACTACCTTGCATTAAATAGCATGTTGAAAAAAAAGGCTGCATTAACACGATTATTCACTGATGATTCATGGAATAATGACAAGTTAAGTCAGACGGTTATAGGAAAAGAGATCGAGTCTCGTGTACTAAGTAACACATTTTGGGACAATGTAGAGGTCATAGTCCAAATTTTTTAG

Coding sequence (CDS)

ATGTTGAAAAGCGTCATACGTGAAGTAGGGTCCGAGAAAGTGGTTCAAATTGTCACAGACAATGGGTCTGCTTTCAAGAAGGTGGGTGAGTTAATAATGAAAATTTTTAATATTTATTGGACCCCTTGTGCAGCGCATTGCATAGATTTAATGTTTGAAGATATAGGAAAACGAGAATCAGTAGGATCGGTTATTAGAGTTGCACGAGGGGTGACAAATTACATTTATAATCATGGATGGTTACTTAGTAAGATGCTCGAGATTTGTGAAGATGATATAATCCTACCTGGGAGCACTAGGTTTGCAACAAACTACCTTGCATTAAATAGCATGTTGAAAAAAAAGGCTGCATTAACACGATTATTCACTGATGATTCATGGAATAATGACAAGTTAAGTCAGACGGTTATAGGAAAAGAGATCGAGTCTCGTGTACTAAGTAACACATTTTGGGACAATGTAGAGGTCATAGTCCAAATTTTTTAG

Protein sequence

MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRESVGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTRLFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF

Homology

[Close]

BLAST of Lcy02g011900 vs. ExPASy TrEMBL
Match: A0A438DX18 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_081895 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-52
Identity = 97/161 (60.25%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRES 60
           +LK VI+EVG + VVQIVTDNGSAF K G+L+MK +N+YWTPCAAHCIDLMFEDIGKR S
Sbjct: 248 LLKDVIKEVGKQNVVQIVTDNGSAFVKAGKLLMKKYNLYWTPCAAHCIDLMFEDIGKRTS 307

Query: 61  VGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTR 120
           V  +I  AR +TN+IYNH WLL++M ++C  DI+ PG+TRFATNY+AL+S+LKKKA L +
Sbjct: 308 VADLITKARKITNFIYNHSWLLAQMRKVCGGDIVRPGATRFATNYIALDSLLKKKANLKK 367

Query: 121 LFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF 162
           +F  D W    LS+T+IGKE+ES +  + +W+ V  +V I+
Sbjct: 368 VFISDEWAQHNLSRTLIGKEVESLMFDHAYWERVGKLVSIY 408

[Close]

BLAST of Lcy02g011900 vs. ExPASy TrEMBL
Match: A0A438BS72 (Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg00300_1 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-52
Identity = 97/161 (60.25%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRES 60
           +LK VI+EVG + VVQIVTDNGSAF K G+L+MK +N+YWTPCAAHCIDLMFEDIGKR S
Sbjct: 361 LLKDVIKEVGKQNVVQIVTDNGSAFVKAGKLLMKKYNLYWTPCAAHCIDLMFEDIGKRTS 420

Query: 61  VGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTR 120
           V  +I  AR +TN+IYNH WLL++M ++C  DI+ PG+TRFATNY+AL+S+LKKKA L +
Sbjct: 421 VADLITKARKITNFIYNHSWLLAQMRKVCGGDIVRPGATRFATNYIALDSLLKKKANLKK 480

Query: 121 LFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF 162
           +F  D W    LS+T+IGKE+ES +  + +W+ V  +V I+
Sbjct: 481 VFISDEWAQHNLSRTLIGKEVESLMFDHAYWERVGKLVSIY 521

[Close]

BLAST of Lcy02g011900 vs. ExPASy TrEMBL
Match: A5BDB0 (BED-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_011444 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-52
Identity = 97/161 (60.25%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRES 60
           +LK VI+EVG + VVQIVTDNGSAF K G+L+MK +N+YWTPCAA+CIDLMFEDIGKR S
Sbjct: 351 LLKDVIKEVGKQNVVQIVTDNGSAFVKAGKLLMKKYNLYWTPCAAYCIDLMFEDIGKRTS 410

Query: 61  VGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTR 120
           V  +IR AR +TN+IYNH WLL++M ++C  DI+ PG+TRFATNY+AL+S+LKKKA L +
Sbjct: 411 VADLIRKARKITNFIYNHSWLLAQMRKVCGGDIVRPGATRFATNYIALDSLLKKKANLKK 470

Query: 121 LFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF 162
           +F  D W    LS+T+IGKE+ES +  + +W+ V  +V I+
Sbjct: 471 VFISDEWAQHNLSRTLIGKEVESLMFDHAYWERVGKLVSIY 511

[Close]

BLAST of Lcy02g011900 vs. ExPASy TrEMBL
Match: A0A438CD84 (BED-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_116312 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-52
Identity = 97/161 (60.25%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRES 60
           +LK VI+EVG + VVQIVTDNGSAF K G+L+MK +N+YWTPCAAHCIDLMFEDIGKR S
Sbjct: 351 LLKDVIKEVGKQNVVQIVTDNGSAFVKAGKLLMKKYNLYWTPCAAHCIDLMFEDIGKRTS 410

Query: 61  VGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTR 120
           V  +I  AR +TN+IYNH WLL++M ++C  DI+ PG+TRFATNY+AL+S+LKKKA L +
Sbjct: 411 VADLITKARKITNFIYNHSWLLAQMRKVCGGDIVRPGATRFATNYIALDSLLKKKANLKK 470

Query: 121 LFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF 162
           +F  D W    LS+T+IGKE+ES +  + +W+ V  +V I+
Sbjct: 471 VFISDEWAQHNLSRTLIGKEVESLMFDHAYWERVGKLVSIY 511

[Close]

BLAST of Lcy02g011900 vs. ExPASy TrEMBL
Match: A0A438C410 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1214 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.1e-52
Identity = 97/161 (60.25%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRES 60
           +LK VI+EVG + VVQIVTDNGSAF K G+L+MK +N+YWTPCAAHCIDLMFEDIGKR S
Sbjct: 361 LLKDVIKEVGKQNVVQIVTDNGSAFVKAGKLLMKKYNLYWTPCAAHCIDLMFEDIGKRTS 420

Query: 61  VGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTR 120
           V  +I  AR +TN+IYNH WLL++M ++C  DI+ PG+TRFATNY+AL+S+LKKKA L +
Sbjct: 421 VADLITKARKITNFIYNHSWLLAQMRKVCGGDIVRPGATRFATNYIALDSLLKKKANLKK 480

Query: 121 LFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF 162
           +F  D W    LS+T+IGKE+ES +  + +W+ V  +V I+
Sbjct: 481 VFISDEWAQHNLSRTLIGKEVESLMFDHAYWERVGKLVSIY 521

[Close]

BLAST of Lcy02g011900 vs. NCBI nr
Match: RVW52863.1 (hypothetical protein CK203_089633 [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-52
Identity = 97/161 (60.25%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRES 60
           +LK VI+EVG + VVQIVTDNGSAF K G+L+MK +N+YWTPCAAHCIDLMFEDIGKR S
Sbjct: 360 LLKDVIKEVGKQNVVQIVTDNGSAFVKAGKLLMKKYNLYWTPCAAHCIDLMFEDIGKRTS 419

Query: 61  VGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTR 120
           V  +I  AR +TN+IYNH WLL++M ++C  DI+ PG+TRFATNY+AL+S+LKKKA L +
Sbjct: 420 VADLITKARKITNFIYNHSWLLAQMRKVCGGDIVRPGATRFATNYIALDSLLKKKANLKK 479

Query: 121 LFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF 162
           +F  D W    LS+T+IGKE+ES +  + +W+ V  +V I+
Sbjct: 480 VFISDEWAQHNLSRTLIGKEVESLMFDHAYWERVGKLVSIY 520

[Close]

BLAST of Lcy02g011900 vs. NCBI nr
Match: CAN78182.1 (hypothetical protein VITISV_024118 [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-52
Identity = 96/161 (59.63%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRES 60
           +LK VI+EVG + VVQIVTDNGSAF K G+L++K +N+YWTPCA HCIDLMFEDIGKR S
Sbjct: 332 LLKDVIKEVGKQNVVQIVTDNGSAFVKAGKLLIKKYNLYWTPCATHCIDLMFEDIGKRTS 391

Query: 61  VGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTR 120
           V +VI  AR +TN+IYNHGWLL++M ++C  DI+ PG+TRFATNY+ALN++LKKK  L +
Sbjct: 392 VANVITKARKITNFIYNHGWLLAQMRKVCGGDIVRPGATRFATNYIALNNLLKKKVNLKK 451

Query: 121 LFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF 162
           +F  D W    LS+T+IGKE+ES +  + +W+ V  +V I+
Sbjct: 452 VFISDEWAQHNLSRTLIGKEVESLMFDHAYWERVGKLVSIY 492

[Close]

BLAST of Lcy02g011900 vs. NCBI nr
Match: RVW84589.1 (hypothetical protein CK203_048101 [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-52
Identity = 97/161 (60.25%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRES 60
           +LK VI+EVG + VVQIVTDNGSAF K G+L+MK +N+YWTPCAAHCIDLMFEDIGKR S
Sbjct: 262 LLKDVIKEVGKQNVVQIVTDNGSAFVKAGKLLMKKYNLYWTPCAAHCIDLMFEDIGKRTS 321

Query: 61  VGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTR 120
           V  +I  AR +TN+IYNH WLL++M ++C  DI+ PG+TRFATNY+AL+S+LKKKA L +
Sbjct: 322 VADLITKARKITNFIYNHSWLLAQMRKVCGGDIVRPGATRFATNYIALDSLLKKKANLKK 381

Query: 121 LFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF 162
           +F  D W    LS+T+IGKE+ES +  + +W+ V  +V I+
Sbjct: 382 VFISDEWAQHNLSRTLIGKEVESLMFDHAYWERVGKLVSIY 422

[Close]

BLAST of Lcy02g011900 vs. NCBI nr
Match: RVW17879.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-52
Identity = 97/161 (60.25%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRES 60
           +LK VI+EVG + VVQIVTDNGSAF K G+L+MK +N+YWTPCAAHCIDLMFEDIGKR S
Sbjct: 361 LLKDVIKEVGKQNVVQIVTDNGSAFVKAGKLLMKKYNLYWTPCAAHCIDLMFEDIGKRTS 420

Query: 61  VGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTR 120
           V  +I  AR +TN+IYNH WLL++M ++C  DI+ PG+TRFATNY+AL+S+LKKKA L +
Sbjct: 421 VADLITKARKITNFIYNHSWLLAQMRKVCGGDIVRPGATRFATNYIALDSLLKKKANLKK 480

Query: 121 LFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF 162
           +F  D W    LS+T+IGKE+ES +  + +W+ V  +V I+
Sbjct: 481 VFISDEWAQHNLSRTLIGKEVESLMFDHAYWERVGKLVSIY 521

[Close]

BLAST of Lcy02g011900 vs. NCBI nr
Match: RVW13811.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 2.2e-52
Identity = 97/161 (60.25%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIFNIYWTPCAAHCIDLMFEDIGKRES 60
           +LK VI+EVG + VVQIVTDNGSAF K G+L+MK +N+YWTPCAAHCIDLMFEDIGKR S
Sbjct: 361 LLKDVIKEVGKQNVVQIVTDNGSAFVKAGKLLMKKYNLYWTPCAAHCIDLMFEDIGKRTS 420

Query: 61  VGSVIRVARGVTNYIYNHGWLLSKMLEICEDDIILPGSTRFATNYLALNSMLKKKAALTR 120
           V  +I  AR +TN+IYNH WLL++M ++C  DI+ PG+TRFATNY+AL+S+LKKKA L +
Sbjct: 421 VADLITKARKITNFIYNHSWLLAQMRKVCGGDIVRPGATRFATNYIALDSLLKKKANLKK 480

Query: 121 LFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVIVQIF 162
           +F  D W    LS+T+IGKE+ES +  + +W+ V  +V I+
Sbjct: 481 VFISDEWAQHNLSRTLIGKEVESLMFDHAYWERVGKLVSIY 521

[Close]

BLAST of Lcy02g011900 vs. TAIR 10
Match: AT3G17450.1 (hAT dimerisation domain-containing protein )

HSP 1 Score: 119.0 bits (297), Expect = 3.5e-27
Identity = 63/165 (38.18%), Postives = 95/165 (57.58%), Query Frame = 0


Query: 2   LKSVIREVGSEKVVQIVTDNGSAFKKVGELI-MKIFNIYWTPCAAHCIDLMFEDIGKRES 61
           L  ++ ++G E VVQ++T N + F+  G+L+  K  N+YWTPCA HC +L+ ED  K E 
Sbjct: 423 LDKLVDDIGEENVVQVITQNTAIFRSAGKLLEEKRKNLYWTPCAIHCTELVLEDFSKLEF 482

Query: 62  VGSVIRVARGVTNYIYNHGWLLSKML-EICED-DIILPGSTRFATNYLALNSMLKKKAAL 121
           V   +  A+ +T +IYN  WLL+ M  E  +  D++ P   R A+ +  L S++  KA+L
Sbjct: 483 VSECLEKAQRITRFIYNQTWLLNLMKNEFTQGLDLLRPAVMRHASGFTTLQSLMDHKASL 542

Query: 122 TRLFTDDSWNNDKLSQTVI----GKEIESRVLSNTFWDNVEVIVQ 160
             LF  D W    LSQT      G+E+E  VLS  FW  V+ +++
Sbjct: 543 RGLFQSDGW---ILSQTAAKSEEGREVEKMVLSAVFWKKVQYVLK 584

[Close]

BLAST of Lcy02g011900 vs. TAIR 10
Match: AT3G22220.1 (hAT transposon superfamily )

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-23
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIF-NIYWTPCAAHCIDLMFEDIGKRE 60
           +LK V+ E+G   VVQ++T     +   G+ +M ++ ++YW PCAAHCID M E+ GK +
Sbjct: 310 LLKEVVEEIGDTNVVQVITKCEDHYAAAGKKLMDVYPSLYWVPCAAHCIDKMLEEFGKMD 369

Query: 61  SVGSVIRVARGVTNYIYNHGWLLSKMLEIC-EDDIILPGSTRFATNYLALNSMLKKKAAL 120
            +  +I  AR VT  IYNH  +L+ M +    +DI+ P  T  ATN+  +  +   K  L
Sbjct: 370 WIREIIEQARTVTRIIYNHSGVLNLMRKFTFGNDIVQPVCTSSATNFTTMGRIADLKPYL 429

Query: 121 TRLFTDDSWNNDKLSQTVIGKEIESRVLSNTFW 152
             + T   WN+   S+   G  +   +    FW
Sbjct: 430 QAMVTSSEWNDCSYSKEAGGLAMTETINDEDFW 462

[Close]

BLAST of Lcy02g011900 vs. TAIR 10
Match: AT3G22220.2 (hAT transposon superfamily )

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-23
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIF-NIYWTPCAAHCIDLMFEDIGKRE 60
           +LK V+ E+G   VVQ++T     +   G+ +M ++ ++YW PCAAHCID M E+ GK +
Sbjct: 310 LLKEVVEEIGDTNVVQVITKCEDHYAAAGKKLMDVYPSLYWVPCAAHCIDKMLEEFGKMD 369

Query: 61  SVGSVIRVARGVTNYIYNHGWLLSKMLEIC-EDDIILPGSTRFATNYLALNSMLKKKAAL 120
            +  +I  AR VT  IYNH  +L+ M +    +DI+ P  T  ATN+  +  +   K  L
Sbjct: 370 WIREIIEQARTVTRIIYNHSGVLNLMRKFTFGNDIVQPVCTSSATNFTTMGRIADLKPYL 429

Query: 121 TRLFTDDSWNNDKLSQTVIGKEIESRVLSNTFW 152
             + T   WN+   S+   G  +   +    FW
Sbjct: 430 QAMVTSSEWNDCSYSKEAGGLAMTETINDEDFW 462

[Close]

BLAST of Lcy02g011900 vs. TAIR 10
Match: AT4G15020.1 (hAT transposon superfamily )

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-22
Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIF-NIYWTPCAAHCIDLMFEDIGKRE 60
           +L  ++ EVGS  VVQ++T     +   G+ +M ++ ++YW PCAAHCID M E+ GK  
Sbjct: 314 LLSELVEEVGSTNVVQVITKCDDYYVDAGKRLMLVYPSLYWVPCAAHCIDQMLEEFGKLG 373

Query: 61  SVGSVIRVARGVTNYIYNHGWLLSKMLEICE-DDIILPGSTRFATNYLALNSMLKKKAAL 120
            +   I  A+ +T ++YNH  +L+ M +    +DI+LP  +  ATN+  L  + + K+ L
Sbjct: 374 WISETIEQAQAITRFVYNHSGVLNLMWKFTSGNDILLPAFSSSATNFATLGRIAELKSNL 433

Query: 121 TRLFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVI 158
             + T   WN    S+   G  + + +    FW  V ++
Sbjct: 434 QAMVTSAEWNECSYSEEPSGL-VMNALTDEAFWKAVALV 471

[Close]

BLAST of Lcy02g011900 vs. TAIR 10
Match: AT4G15020.2 (hAT transposon superfamily )

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-22
Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = 0


Query: 1   MLKSVIREVGSEKVVQIVTDNGSAFKKVGELIMKIF-NIYWTPCAAHCIDLMFEDIGKRE 60
           +L  ++ EVGS  VVQ++T     +   G+ +M ++ ++YW PCAAHCID M E+ GK  
Sbjct: 314 LLSELVEEVGSTNVVQVITKCDDYYVDAGKRLMLVYPSLYWVPCAAHCIDQMLEEFGKLG 373

Query: 61  SVGSVIRVARGVTNYIYNHGWLLSKMLEICE-DDIILPGSTRFATNYLALNSMLKKKAAL 120
            +   I  A+ +T ++YNH  +L+ M +    +DI+LP  +  ATN+  L  + + K+ L
Sbjct: 374 WISETIEQAQAITRFVYNHSGVLNLMWKFTSGNDILLPAFSSSATNFATLGRIAELKSNL 433

Query: 121 TRLFTDDSWNNDKLSQTVIGKEIESRVLSNTFWDNVEVI 158
             + T   WN    S+   G  + + +    FW  V ++
Sbjct: 434 QAMVTSAEWNECSYSEEPSGL-VMNALTDEAFWKAVALV 471

The following BLAST results are available for this feature:

BLAST of Lcy02g011900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g011900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438DX18	1.1e-52	60.25	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_081895 PE=4 SV=1	[more]
A0A438BS72	1.1e-52	60.25	Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg00300_1 PE=4 SV...	[more]
A5BDB0	1.1e-52	60.25	BED-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_011444 P...	[more]
A0A438CD84	1.1e-52	60.25	BED-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_116312 PE...	[more]
A0A438C410	1.1e-52	60.25	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1214 ...	[more]

BLAST of Lcy02g011900 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW52863.1	2.2e-52	60.25	hypothetical protein CK203_089633 [Vitis vinifera]	[more]
CAN78182.1	2.2e-52	59.63	hypothetical protein VITISV_024118 [Vitis vinifera]	[more]
RVW84589.1	2.2e-52	60.25	hypothetical protein CK203_048101 [Vitis vinifera]	[more]
RVW17879.1	2.2e-52	60.25	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW13811.1	2.2e-52	60.25	putative mitochondrial protein [Vitis vinifera]	[more]

BLAST of Lcy02g011900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17450.1	3.5e-27	38.18	hAT dimerisation domain-containing protein	[more]
AT3G22220.1	4.0e-23	33.99	hAT transposon superfamily	[more]
AT3G22220.2	4.0e-23	33.99	hAT transposon superfamily	[more]
AT4G15020.1	2.0e-22	32.08	hAT transposon superfamily	[more]
AT4G15020.2	2.0e-22	32.08	hAT transposon superfamily	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007021	Domain of unknown function DUF659	PFAM	PF04937	DUF659	coord: 2..70 e-value: 4.1E-21 score: 75.4
None	No IPR available	PANTHER	PTHR32166	OSJNBA0013A04.12 PROTEIN	coord: 2..160
None	No IPR available	PANTHER	PTHR32166:SF55	BINDING PROTEIN, PUTATIVE-RELATED	coord: 2..160
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 5..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g011900.1	Lcy02g011900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity