Lcy02g011540 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g011540
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Hyphally-regulated protein-like
Location	Chr02: 34813605 .. 34813856 (+)
RNA-Seq Expression	Lcy02g011540
Synteny	Lcy02g011540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATGAAGATTTTGAGCTTCGTTTTGATTTTTTCAATGATGTGTAATGAAAGTTTACTTGGAATTGTTGAAGCAAGGCCTCTCCATATGGACAGCGCAGTAGCTACAAATGATTTCTTGGCGAGATTATCTCTAGGAGCCATCAAGCAGTCTGGTCCAAGCCCCGGCGATGGCCACAAGTTCACCGATGTCGATAGTCTTGGTGGTATCAAGGACTCCGCCCGAGCCCTGGCATCGGCCACAGCCTAA

mRNA sequence

ATGATGATGAAGATTTTGAGCTTCGTTTTGATTTTTTCAATGATGTGTAATGAAAGTTTACTTGGAATTGTTGAAGCAAGGCCTCTCCATATGGACAGCGCAGTAGCTACAAATGATTTCTTGGCGAGATTATCTCTAGGAGCCATCAAGCAGTCTGGTCCAAGCCCCGGCGATGGCCACAAGTTCACCGATGTCGATAGTCTTGGTGGTATCAAGGACTCCGCCCGAGCCCTGGCATCGGCCACAGCCTAA

Coding sequence (CDS)

ATGATGATGAAGATTTTGAGCTTCGTTTTGATTTTTTCAATGATGTGTAATGAAAGTTTACTTGGAATTGTTGAAGCAAGGCCTCTCCATATGGACAGCGCAGTAGCTACAAATGATTTCTTGGCGAGATTATCTCTAGGAGCCATCAAGCAGTCTGGTCCAAGCCCCGGCGATGGCCACAAGTTCACCGATGTCGATAGTCTTGGTGGTATCAAGGACTCCGCCCGAGCCCTGGCATCGGCCACAGCCTAA

Protein sequence

MMMKILSFVLIFSMMCNESLLGIVEARPLHMDSAVATNDFLARLSLGAIKQSGPSPGDGHKFTDVDSLGGIKDSARALASATA

Homology

[Close]

BLAST of Lcy02g011540 vs. ExPASy TrEMBL
Match: A0A0A0KIE2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491710 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 6  LSFVLIFSMMCNESLLGIVEARPLHM------DSAVATNDFLARLSLGAIKQSGPSP-GD 65
          + F+L+ +++ N  L+ + +ARPL +       +A    DF   LSLGAIKQSGPS  GD
Sbjct: 9  IGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGD 68

Query: 66 GHKFTDVDSLGGIKDSARA 78
          GHKF + D+LGGIKDS  A
Sbjct: 69 GHKFVNYDTLGGIKDSGPA 87

[Close]

BLAST of Lcy02g011540 vs. ExPASy TrEMBL
Match: A0A6J1G6J7 (uncharacterized protein LOC111451329 OS=Cucurbita moschata OX=3662 GN=LOC111451329 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 1  MMMKILSFVLIFSMMCNESLLGIVEARPLHMDSAVATNDFLARLSLGAIKQSGPSPGDGH 60
          MMMK LS +LIFS++ N +LLG VEAR L+  SA  T+DFL    +G +KQS  S G+GH
Sbjct: 1  MMMKTLSILLIFSLLSNGNLLGRVEARSLNTMSAATTDDFLPIPPIGTLKQSTLSIGEGH 60

Query: 61 KFTDVDSLGGIKDS 75
           F D ++L  +K S
Sbjct: 61 NFNDANTLANVKAS 74

[Close]

BLAST of Lcy02g011540 vs. ExPASy TrEMBL
Match: A0A059AZU8 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02229 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 4  KILSFVLIFSMMCNESLLGIVEARPLHM-----DSAVATNDFLARLSLGAIKQSGPSPGD 63
          ++L  +L+ +M+C  ++    EARP ++        VA   F   LSLGAIKQ+GPSPG+
Sbjct: 6  RVLHILLVLAMLC--AVFVANEARPFNVMETKAPVGVACGGFFDGLSLGAIKQAGPSPGE 65

Query: 64 GHKFTDVDSLGGIKDS 75
          GHKFT+ ++LGGIKDS
Sbjct: 66 GHKFTNSETLGGIKDS 79

[Close]

BLAST of Lcy02g011540 vs. ExPASy TrEMBL
Match: A0A5B7BY66 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_042998 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 3  MKILSFVLIFSMMCNESLLGIVEARPL-----HMDSAVATNDFLARLSLGAIKQSGPSPG 62
          ++ LSF+ I  ++C  S+    E RP      H  S   T  F   LSLGA+K SGPSPG
Sbjct: 13 LESLSFLFILLLLC--SIFYATEGRPFNILKSHSSSGGCTGGFFDGLSLGAVKNSGPSPG 72

Query: 63 DGHKFTDVDSLGGIKDS 75
          +GHK+T+  +LGGIKDS
Sbjct: 73 EGHKYTNSQTLGGIKDS 87

[Close]

BLAST of Lcy02g011540 vs. ExPASy TrEMBL
Match: A0A5D3CLN9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G004490 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.9e-07
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 2  MMKI-LSFVLIFSMMCNESLLGIVEARPLHM----DSAVATNDFLARLSLGAIKQSGPSP 61
          M KI +  +L+ +++ N  L+ + EARPL +     +A    DF   LSLGAIKQSGPS 
Sbjct: 1  MSKIFIGLILVVALLDNGGLVIVTEARPLGLMGSGSAAAIAEDFFEGLSLGAIKQSGPSA 60

Query: 62 -GDGHKFTDVDSLGGIKDS 75
           GDGHKF + D+ GG+KDS
Sbjct: 61 GGDGHKFVNYDTFGGMKDS 79

[Close]

BLAST of Lcy02g011540 vs. NCBI nr
Match: KAG6571202.1 (hypothetical protein SDJN03_30117, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.1 bits (196), Expect = 9.9e-12
Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 0


Query: 3  MKILSFVLIFSMMCNESLLGIVEARPLHMDSAVATNDFLARLSLGAIKQSGPS-PGDGHK 62
          MKILSFVLI S++ NES  G V+AR LHM +   T +FL  LS GAIK  G S  GDGH 
Sbjct: 1  MKILSFVLILSLLSNESCFGTVQARHLHMTNFTTTRNFLGGLSFGAIKNFGSSCSGDGHN 60

Query: 63 FTDVDSLGGIKDS 75
          FTDV +LGGIK+S
Sbjct: 61 FTDVVTLGGIKNS 73

[Close]

BLAST of Lcy02g011540 vs. NCBI nr
Match: KAG6595008.1 (PAMP-induced secreted peptide 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027036.1 hypothetical protein SDJN02_11045, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-08
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 5  ILSFVLIFSMMCNESLLGIVEARPLH-MDSAVATNDFLARLSLGAIKQSGPSP-GDGHKF 64
          ++  +L+ +++     L   EARPL+ M SA    DF   LSLGAIKQSGPSP GDGHKF
Sbjct: 8  LIGLILVAALLAGNGGLVATEARPLNAMASAAIAEDFFEGLSLGAIKQSGPSPGGDGHKF 67

Query: 65 TDVDSLGGIKDS 75
           + D+LGGIK+S
Sbjct: 68 VNFDTLGGIKES 79

[Close]

BLAST of Lcy02g011540 vs. NCBI nr
Match: KAE8647505.1 (hypothetical protein Csa_003084 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 3.9e-08
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 6  LSFVLIFSMMCNESLLGIVEARPLHM------DSAVATNDFLARLSLGAIKQSGPSP-GD 65
          + F+L+ +++ N  L+ + +ARPL +       +A    DF   LSLGAIKQSGPS  GD
Sbjct: 15 IGFILVAALLGNGGLVTVTDARPLTLMRLGSGSAATIAEDFFEGLSLGAIKQSGPSAGGD 74

Query: 66 GHKFTDVDSLGGIKDSARA 78
          GHKF + D+LGGIKDS  A
Sbjct: 75 GHKFVNYDTLGGIKDSGPA 93

[Close]

BLAST of Lcy02g011540 vs. NCBI nr
Match: XP_022947472.1 (uncharacterized protein LOC111451329 [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-08
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 1  MMMKILSFVLIFSMMCNESLLGIVEARPLHMDSAVATNDFLARLSLGAIKQSGPSPGDGH 60
          MMMK LS +LIFS++ N +LLG VEAR L+  SA  T+DFL    +G +KQS  S G+GH
Sbjct: 1  MMMKTLSILLIFSLLSNGNLLGRVEARSLNTMSAATTDDFLPIPPIGTLKQSTLSIGEGH 60

Query: 61 KFTDVDSLGGIKDS 75
           F D ++L  +K S
Sbjct: 61 NFNDANTLANVKAS 74

[Close]

BLAST of Lcy02g011540 vs. NCBI nr
Match: KAF8017354.1 (hypothetical protein BT93_H2522 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-07
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 25 EARPLHM-----DSAVATNDFLARLSLGAIKQSGPSPGDGHKFTDVDSLGGIKDS 75
          EARP ++      + VA   F  RLSLGAIKQ+GPSPG+GHKFT+ ++LGGIKDS
Sbjct: 25 EARPFNVMETKAPAGVACGGFFDRLSLGAIKQAGPSPGEGHKFTNSETLGGIKDS 79

[Close]

BLAST of Lcy02g011540 vs. TAIR 10
Match: AT2G23270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, sperm cell, root, stamen; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37290.1); Has 36 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 3.6e-04
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 1  MMMKILSFVLIFSMMCNESLLGIVEARPLHMDSAV--ATNDFLARLSLGAIKQSGPSP-G 60
          MM K++    +F M+ + +   +VEARPL +  A       F   LSLGAIK+SGPS  G
Sbjct: 2  MMNKVVLGSFLFFMLVSSNF--VVEARPLGLTKAEENLVAKFFDGLSLGAIKESGPSSGG 61

Query: 61 DGHKFTD 65
          +GH+F D
Sbjct: 62 EGHRFVD 66

[Close]

BLAST of Lcy02g011540 vs. TAIR 10
Match: AT4G37290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: cotyledon, hypocotyl, leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.4 bits (93), Expect = 8.1e-04
Identity = 28/68 (41.18%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 1  MMMKILSFVLIFSMMCNESLLGIVEARPLHMDSAVATNDFLAR----LSLGAIKQSGPSP 60
          M   +LS +L F ++ +     +VE+RPL +        F+A     LSLG+IK SGPSP
Sbjct: 3  MNKNVLSSILFFMLIGSV----LVESRPLGLTK--TEEKFVASLFDGLSLGSIKDSGPSP 62

Query: 61 GDGHKFTD 65
          G+GHK  D
Sbjct: 63 GEGHKVVD 64

The following BLAST results are available for this feature:

BLAST of Lcy02g011540 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g011540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIE2	1.9e-08	48.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G491710 PE=4 SV=1	[more]
A0A6J1G6J7	2.5e-08	51.35	uncharacterized protein LOC111451329 OS=Cucurbita moschata OX=3662 GN=LOC1114513...	[more]
A0A059AZU8	2.7e-07	47.37	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H02229 PE=4 SV...	[more]
A0A5B7BY66	3.6e-07	46.75	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_042998...	[more]
A0A5D3CLN9	7.9e-07	48.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy02g011540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571202.1	9.9e-12	61.64	hypothetical protein SDJN03_30117, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6595008.1	3.0e-08	52.78	PAMP-induced secreted peptide 2, partial [Cucurbita argyrosperma subsp. sororia]...	[more]
KAE8647505.1	3.9e-08	48.10	hypothetical protein Csa_003084 [Cucumis sativus]	[more]
XP_022947472.1	5.1e-08	51.35	uncharacterized protein LOC111451329 [Cucurbita moschata]	[more]
KAF8017354.1	1.9e-07	60.00	hypothetical protein BT93_H2522 [Corymbia citriodora subsp. variegata]	[more]

BLAST of Lcy02g011540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23270.1	3.6e-04	43.28	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G37290.1	8.1e-04	41.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34663:SF17	SUBFAMILY NOT NAMED	coord: 4..77
IPR044700	PIP2/PIPL1	PANTHER	PTHR34663	OS06G0637400 PROTEIN	coord: 4..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g011540.1	Lcy02g011540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045087	innate immune response
biological_process	GO:0050793	regulation of developmental process