Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTTGAGGTAGAGAGGGGTATTTCTCAAAATAAAGTGGACTTAGATGGAAAAACTTGTAGTTGTCGATCATGGGATTTAACGAGCATACCTTGTATTCATGCTGTACAAAGTATCTATTACATTAAAAAAAAACCTGAGGAGTTTGTACATGAATCTTACCGTAAGCAGACATTGATGAAGATTTACTCCTCCTTCATCAAACCGGTCAATGATCACTCTTTATGGCCAAGAACCACATTTGAACCTTTGCTACCACCCAAGATCCGAAGGCCTCCTGGTAGACCAAAAAGGCAGAGAAGAAGAGATGTTGACGAAGCCACATTGTCTCATGGGAAGCGACGCATTCAGGTTATTACCAAGTGTAGCCGATGTAAAGGTACAGGACATAATGTTAGATCTTGTAAGGGGTCAATAGCACAAAGTTCAACAAGAATTAGGAGAGATAGAACCTTCATGGGATTGAGCATTCCTATTACTGTAAGTGTTACTTCACCTTGTGTTCATTTACCTTGTTTTCATTCATCTTGTGTTAGACTAAATCATTTGTGTTTGCAGGAGGTTGAAACTGGAGCTACTATTGAGGGAACGACGTCTGAAAGTGGGAGACAAAACAATGAAGGTGAAAGATAG
mRNA sequence
ATGATGTTTGAGGTAGAGAGGGGTATTTCTCAAAATAAAGTGGACTTAGATGGAAAAACTTGTAGTTGTCGATCATGGGATTTAACGAGCATACCTTGTATTCATGCTGTACAAAGTATCTATTACATTAAAAAAAAACCTGAGGAGTTTGTACATGAATCTTACCGTAAGCAGACATTGATGAAGATTTACTCCTCCTTCATCAAACCGGTCAATGATCACTCTTTATGGCCAAGAACCACATTTGAACCTTTGCTACCACCCAAGATCCGAAGGCCTCCTGGTAGACCAAAAAGGCAGAGAAGAAGAGATGTTGACGAAGCCACATTGTCTCATGGGAAGCGACGCATTCAGGTTATTACCAAGTGTAGCCGATGTAAAGGTACAGGACATAATGTTAGATCTTGTAAGGGGTCAATAGCACAAAGTTCAACAAGAATTAGGAGAGATAGAACCTTCATGGGATTGAGCATTCCTATTACTGAGGTTGAAACTGGAGCTACTATTGAGGGAACGACGTCTGAAAGTGGGAGACAAAACAATGAAGGTGAAAGATAG
Coding sequence (CDS)
ATGATGTTTGAGGTAGAGAGGGGTATTTCTCAAAATAAAGTGGACTTAGATGGAAAAACTTGTAGTTGTCGATCATGGGATTTAACGAGCATACCTTGTATTCATGCTGTACAAAGTATCTATTACATTAAAAAAAAACCTGAGGAGTTTGTACATGAATCTTACCGTAAGCAGACATTGATGAAGATTTACTCCTCCTTCATCAAACCGGTCAATGATCACTCTTTATGGCCAAGAACCACATTTGAACCTTTGCTACCACCCAAGATCCGAAGGCCTCCTGGTAGACCAAAAAGGCAGAGAAGAAGAGATGTTGACGAAGCCACATTGTCTCATGGGAAGCGACGCATTCAGGTTATTACCAAGTGTAGCCGATGTAAAGGTACAGGACATAATGTTAGATCTTGTAAGGGGTCAATAGCACAAAGTTCAACAAGAATTAGGAGAGATAGAACCTTCATGGGATTGAGCATTCCTATTACTGAGGTTGAAACTGGAGCTACTATTGAGGGAACGACGTCTGAAAGTGGGAGACAAAACAATGAAGGTGAAAGATAG
Protein sequence
MMFEVERGISQNKVDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTLMKIYSSFIKPVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDEATLSHGKRRIQVITKCSRCKGTGHNVRSCKGSIAQSSTRIRRDRTFMGLSIPITEVETGATIEGTTSESGRQNNEGER
Homology
BLAST of Lcy02g011510 vs. ExPASy TrEMBL
Match:
A0A396J0S1 (Putative transcription factor interactor and regulator CCHC(Zn) family OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr2g0278781 PE=4 SV=1)
HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 0
Query: 3 FEVERGISQNKVDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTLMK 62
F V G +++ +TCSCR W+L+ IPC HAV +IYY + P+E+V YRKQT +
Sbjct: 39 FSVSDGSDMYVINVKERTCSCRRWELSGIPCPHAVAAIYYNSQNPDEYVAHWYRKQTFLD 98
Query: 63 IYSSFIKPVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDE--ATLSHGKRRIQVI 122
Y +FI P N LWP P+LPP +RR PGRPK+ RR+D DE +T S +R Q
Sbjct: 99 TYDNFIMPSNGPKLWPEVNLPPILPPPVRRAPGRPKKLRRKDNDEPKSTTSKKGKRNQET 158
Query: 123 TKCSRCKGTGHNVRSCKGSIA 142
+C+RCK GHN+R+CKG A
Sbjct: 159 MRCTRCKELGHNMRTCKGKTA 179
BLAST of Lcy02g011510 vs. ExPASy TrEMBL
Match:
A0A1S3U0L5 (uncharacterized protein LOC106760651 OS=Vigna radiata var. radiata OX=3916 GN=LOC106760651 PE=4 SV=1)
HSP 1 Score: 138.3 bits (347), Expect = 3.3e-29
Identity = 76/181 (41.99%), Postives = 103/181 (56.91%), Query Frame = 0
Query: 3 FEVERGISQNK--VDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTL 62
FEV G + +K VD+ +CSC WDL IPC HAV +I+Y + PE++VH Y+K+
Sbjct: 336 FEVTHGFTMDKFVVDVSNHSCSCYFWDLVGIPCRHAVAAIHYKLENPEDYVHPYYKKEAY 395
Query: 63 MKIYSSFIKPVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDEATLSHGK-RRIQV 122
Y+ I P+N LWPR+ EPLLPP + PPGRPK+ RRR+ DE +SH K + +
Sbjct: 396 QTCYAPQIIPINGQQLWPRSETEPLLPPIYKTPPGRPKKLRRREADE-YVSHSKLSKKNI 455
Query: 123 ITKCSRCKGTGHNVRSCKGSIAQSSTRIRRD--RTFMGLSIPITEVETGATIEGTTSESG 179
KCS C GHNVRSCK + T + R T G S + +T G ++ +G
Sbjct: 456 GMKCSSCHAYGHNVRSCKKGQSSKDTGVARGSASTVRGASTSTGRGASASTGRGASASAG 515
BLAST of Lcy02g011510 vs. ExPASy TrEMBL
Match:
A0A2K3MIG9 (Sucrose-phosphate synthase-like protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g046701 PE=4 SV=1)
HSP 1 Score: 137.1 bits (344), Expect = 7.4e-29
Identity = 75/186 (40.32%), Postives = 104/186 (55.91%), Query Frame = 0
Query: 2 MFEVERGISQNKVDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTLM 61
+F V GI Q V+L KTC+CR W+L+ IPC+HA+ +++ KPE+FV YRK T +
Sbjct: 9 IFSVSNGIDQYVVNLVEKTCACRRWELSGIPCVHAISCLWFNNTKPEDFVAHWYRKTTFV 68
Query: 62 KIYSSFIKPVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDEATLSHGKRRIQVIT 121
Y++ I P N LWP P+ PP +RR PGRPK+ RR+ DE K+ I +T
Sbjct: 69 DCYNNIILPNNGPKLWPNVEGLPIQPPYVRRAPGRPKKARRKANDEPNPKRMKKVIGTVT 128
Query: 122 KCSRCKGTGHNVRSCKGSIA----------QSSTRIRRDRTFMGLSIPITEVETGATIEG 178
C+RCK GHN RSCKG A +S+T I+ G++ +TGA
Sbjct: 129 -CNRCKRVGHNKRSCKGKTAADRVIPIGGNKSNTSIKHPEAQTGVNY---TAQTGAQSAK 188
BLAST of Lcy02g011510 vs. ExPASy TrEMBL
Match:
A0A6P8DW92 (uncharacterized protein LOC116208272 OS=Punica granatum OX=22663 GN=LOC116208272 PE=4 SV=1)
HSP 1 Score: 135.6 bits (340), Expect = 2.1e-28
Identity = 70/169 (41.42%), Postives = 100/169 (59.17%), Query Frame = 0
Query: 10 SQNKVDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTLMKIYSSFIK 69
S+ VDL TCSCR WDL IPC+HAV I + KPE+FVH Y + T ++Y FIK
Sbjct: 12 SKCAVDLQMHTCSCREWDLIGIPCMHAVACIGFNNLKPEDFVHPWYSRSTHEQLYGFFIK 71
Query: 70 PVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDEATLSHGKRRIQVITKCSRCKGT 129
P W ++ +P+ PPK++RPPGRPK+QR++ +E + +R C +C G+
Sbjct: 72 PTAGEEYWTKSNEDPVQPPKLKRPPGRPKKQRKKGAEEPKDPYKLKRSLGPIVCGKCGGS 131
Query: 130 GHNVRSCKG-SIAQSSTRIRRDRTFMGLSIPITEVETGATIEGTTSESG 178
HN+R+CKG SIA SS + ++ + +PI T A+ +GT S G
Sbjct: 132 KHNIRTCKGPSIASSSKKKEKNSSRKSNVVPIGTNSTVASADGTNSTQG 180
BLAST of Lcy02g011510 vs. ExPASy TrEMBL
Match:
A0A3Q0EIE1 (uncharacterized protein LOC111240565 OS=Vigna radiata var. radiata OX=3916 GN=LOC111240565 PE=4 SV=1)
HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 71/149 (47.65%), Postives = 89/149 (59.73%), Query Frame = 0
Query: 3 FEVERGISQNK--VDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTL 62
FEV G + +K VDL TC+C WDL IPC HAV +I+Y + PE++VH Y+K
Sbjct: 55 FEVTHGFTMDKFIVDLSNHTCTCYFWDLVGIPCRHAVAAIHYKLENPEQYVHPYYKKDAY 114
Query: 63 MKIYSSFIKPVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDEATLSHGK-RRIQV 122
Y+ I P+N LWP + PLLPP + PPGRPK+ RRR+ DE +SH K + Q+
Sbjct: 115 RTCYAPIITPINGQQLWPTSDSAPLLPPIYKTPPGRPKKLRRREADE-YVSHSKLSKKQI 174
Query: 123 ITKCSRCKGTGHNVRSCKGSIAQSSTRIR 149
KCS C GHNVRSCK Q S IR
Sbjct: 175 AMKCSSCNAYGHNVRSCKK--GQKSKEIR 200
BLAST of Lcy02g011510 vs. NCBI nr
Match:
RHN71616.1 (putative transcription factor interactor and regulator CCHC(Zn) family [Medicago truncatula])
HSP 1 Score: 142.5 bits (358), Expect = 3.6e-30
Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = 0
Query: 3 FEVERGISQNKVDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTLMK 62
F V G +++ +TCSCR W+L+ IPC HAV +IYY + P+E+V YRKQT +
Sbjct: 39 FSVSDGSDMYVINVKERTCSCRRWELSGIPCPHAVAAIYYNSQNPDEYVAHWYRKQTFLD 98
Query: 63 IYSSFIKPVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDE--ATLSHGKRRIQVI 122
Y +FI P N LWP P+LPP +RR PGRPK+ RR+D DE +T S +R Q
Sbjct: 99 TYDNFIMPSNGPKLWPEVNLPPILPPPVRRAPGRPKKLRRKDNDEPKSTTSKKGKRNQET 158
Query: 123 TKCSRCKGTGHNVRSCKGSIA 142
+C+RCK GHN+R+CKG A
Sbjct: 159 MRCTRCKELGHNMRTCKGKTA 179
BLAST of Lcy02g011510 vs. NCBI nr
Match:
XP_014499551.1 (uncharacterized protein LOC106760651 [Vigna radiata var. radiata])
HSP 1 Score: 138.3 bits (347), Expect = 6.8e-29
Identity = 76/181 (41.99%), Postives = 103/181 (56.91%), Query Frame = 0
Query: 3 FEVERGISQNK--VDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTL 62
FEV G + +K VD+ +CSC WDL IPC HAV +I+Y + PE++VH Y+K+
Sbjct: 336 FEVTHGFTMDKFVVDVSNHSCSCYFWDLVGIPCRHAVAAIHYKLENPEDYVHPYYKKEAY 395
Query: 63 MKIYSSFIKPVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDEATLSHGK-RRIQV 122
Y+ I P+N LWPR+ EPLLPP + PPGRPK+ RRR+ DE +SH K + +
Sbjct: 396 QTCYAPQIIPINGQQLWPRSETEPLLPPIYKTPPGRPKKLRRREADE-YVSHSKLSKKNI 455
Query: 123 ITKCSRCKGTGHNVRSCKGSIAQSSTRIRRD--RTFMGLSIPITEVETGATIEGTTSESG 179
KCS C GHNVRSCK + T + R T G S + +T G ++ +G
Sbjct: 456 GMKCSSCHAYGHNVRSCKKGQSSKDTGVARGSASTVRGASTSTGRGASASTGRGASASAG 515
BLAST of Lcy02g011510 vs. NCBI nr
Match:
PNX90576.1 (sucrose-phosphate synthase-like protein, partial [Trifolium pratense])
HSP 1 Score: 137.1 bits (344), Expect = 1.5e-28
Identity = 75/186 (40.32%), Postives = 104/186 (55.91%), Query Frame = 0
Query: 2 MFEVERGISQNKVDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTLM 61
+F V GI Q V+L KTC+CR W+L+ IPC+HA+ +++ KPE+FV YRK T +
Sbjct: 9 IFSVSNGIDQYVVNLVEKTCACRRWELSGIPCVHAISCLWFNNTKPEDFVAHWYRKTTFV 68
Query: 62 KIYSSFIKPVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDEATLSHGKRRIQVIT 121
Y++ I P N LWP P+ PP +RR PGRPK+ RR+ DE K+ I +T
Sbjct: 69 DCYNNIILPNNGPKLWPNVEGLPIQPPYVRRAPGRPKKARRKANDEPNPKRMKKVIGTVT 128
Query: 122 KCSRCKGTGHNVRSCKGSIA----------QSSTRIRRDRTFMGLSIPITEVETGATIEG 178
C+RCK GHN RSCKG A +S+T I+ G++ +TGA
Sbjct: 129 -CNRCKRVGHNKRSCKGKTAADRVIPIGGNKSNTSIKHPEAQTGVNY---TAQTGAQSAK 188
BLAST of Lcy02g011510 vs. NCBI nr
Match:
XP_031397476.1 (uncharacterized protein LOC116208272 [Punica granatum])
HSP 1 Score: 135.6 bits (340), Expect = 4.4e-28
Identity = 70/169 (41.42%), Postives = 100/169 (59.17%), Query Frame = 0
Query: 10 SQNKVDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTLMKIYSSFIK 69
S+ VDL TCSCR WDL IPC+HAV I + KPE+FVH Y + T ++Y FIK
Sbjct: 12 SKCAVDLQMHTCSCREWDLIGIPCMHAVACIGFNNLKPEDFVHPWYSRSTHEQLYGFFIK 71
Query: 70 PVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDEATLSHGKRRIQVITKCSRCKGT 129
P W ++ +P+ PPK++RPPGRPK+QR++ +E + +R C +C G+
Sbjct: 72 PTAGEEYWTKSNEDPVQPPKLKRPPGRPKKQRKKGAEEPKDPYKLKRSLGPIVCGKCGGS 131
Query: 130 GHNVRSCKG-SIAQSSTRIRRDRTFMGLSIPITEVETGATIEGTTSESG 178
HN+R+CKG SIA SS + ++ + +PI T A+ +GT S G
Sbjct: 132 KHNIRTCKGPSIASSSKKKEKNSSRKSNVVPIGTNSTVASADGTNSTQG 180
BLAST of Lcy02g011510 vs. NCBI nr
Match:
XP_022631475.1 (uncharacterized protein LOC111240565 [Vigna radiata var. radiata])
HSP 1 Score: 135.2 bits (339), Expect = 5.8e-28
Identity = 71/149 (47.65%), Postives = 89/149 (59.73%), Query Frame = 0
Query: 3 FEVERGISQNK--VDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTL 62
FEV G + +K VDL TC+C WDL IPC HAV +I+Y + PE++VH Y+K
Sbjct: 55 FEVTHGFTMDKFIVDLSNHTCTCYFWDLVGIPCRHAVAAIHYKLENPEQYVHPYYKKDAY 114
Query: 63 MKIYSSFIKPVNDHSLWPRTTFEPLLPPKIRRPPGRPKRQRRRDVDEATLSHGK-RRIQV 122
Y+ I P+N LWP + PLLPP + PPGRPK+ RRR+ DE +SH K + Q+
Sbjct: 115 RTCYAPIITPINGQQLWPTSDSAPLLPPIYKTPPGRPKKLRRREADE-YVSHSKLSKKQI 174
Query: 123 ITKCSRCKGTGHNVRSCKGSIAQSSTRIR 149
KCS C GHNVRSCK Q S IR
Sbjct: 175 AMKCSSCNAYGHNVRSCKK--GQKSKEIR 200
BLAST of Lcy02g011510 vs. TAIR 10
Match:
AT1G64260.1 (MuDR family transposase )
HSP 1 Score: 53.1 bits (126), Expect = 2.7e-07
Identity = 27/82 (32.93%), Postives = 40/82 (48.78%), Query Frame = 0
Query: 14 VDLDGKTCSCRSWDLTSIPCIHAVQSIYYIKKKPEEFVHESYRKQTLMKIYSSFIKPVND 73
V L+ TC+CR + PC+HA+ +K P ++V E Y + K Y++ PV D
Sbjct: 636 VQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPD 695
Query: 74 HSLWPRTTFEP-LLPPKIRRPP 95
+ WP P L PP + P
Sbjct: 696 VAAWPEDCRVPTLFPPSQQLSP 717
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A396J0S1 | 1.8e-30 | 47.52 | Putative transcription factor interactor and regulator CCHC(Zn) family OS=Medica... | [more] |
A0A1S3U0L5 | 3.3e-29 | 41.99 | uncharacterized protein LOC106760651 OS=Vigna radiata var. radiata OX=3916 GN=LO... | [more] |
A0A2K3MIG9 | 7.4e-29 | 40.32 | Sucrose-phosphate synthase-like protein (Fragment) OS=Trifolium pratense OX=5757... | [more] |
A0A6P8DW92 | 2.1e-28 | 41.42 | uncharacterized protein LOC116208272 OS=Punica granatum OX=22663 GN=LOC116208272... | [more] |
A0A3Q0EIE1 | 2.8e-28 | 47.65 | uncharacterized protein LOC111240565 OS=Vigna radiata var. radiata OX=3916 GN=LO... | [more] |
Match Name | E-value | Identity | Description | |
RHN71616.1 | 3.6e-30 | 47.52 | putative transcription factor interactor and regulator CCHC(Zn) family [Medicago... | [more] |
XP_014499551.1 | 6.8e-29 | 41.99 | uncharacterized protein LOC106760651 [Vigna radiata var. radiata] | [more] |
PNX90576.1 | 1.5e-28 | 40.32 | sucrose-phosphate synthase-like protein, partial [Trifolium pratense] | [more] |
XP_031397476.1 | 4.4e-28 | 41.42 | uncharacterized protein LOC116208272 [Punica granatum] | [more] |
XP_022631475.1 | 5.8e-28 | 47.65 | uncharacterized protein LOC111240565 [Vigna radiata var. radiata] | [more] |
Match Name | E-value | Identity | Description | |
AT1G64260.1 | 2.7e-07 | 32.93 | MuDR family transposase | [more] |