Lcy02g011390 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g011390
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr02: 34239584 .. 34241011 (+)
RNA-Seq Expression	Lcy02g011390
Synteny	Lcy02g011390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTTTCGTCTGACAAAACCCGTCCATATTCCTTTGTGACCAGTCTGGTTGACGGATACGACCCGATTTCTTTCCAATTGGTCATTACTCTTCGGATTTTAGGTAATAAATTATTGTCAATCAGTTCATTTATTCAAGCGTTGAGATAGACGCACGGTACTCACATACTAAACCCTAATCTGCAGAACCATTATGGTTGACGGATCAGGCCACATTGATTTTGAATTAATAACTCCTCTTCTGATATAATAAATTATTAACTTACTCTTGTCCCCCAGATGATCCATTCCCCGTCTAAAAACTGAGCGTCGGGACAATCATAGGTACGTGAACCAACGCGGCGGGTTGGGAATTCCCAACTCGCGGGGTTCTAAAAAGTGTATGTCGGTGGGTCGCTAGGGGGTGGTTGTAGCCTTGCGGGTTGGGCTGGAGTCTGTCAAGGTTGGGCGGGTGGTTAATGTTTTTTTTATTACGCAAAATTATTATTTTATTTTTACTGTTCATGGTCGTGACGCAACTCGACGGGTTTAGAATTGCCAGCCCGCGGGGTTGTAAGAAACGTGTGCTGCTAGGTCGCTTGGGGATGGCTGGAGCCTGGCGGGTCGGGCTGGAGTCTGTCGAGCTTGGGCGGGTAGTCGGGGGGCAGCGGGGGTCTTTTGTTCGTGTGGTGACGTCGACAAAGGGTCAATTATCATTGGTTTCTGAGGGGCAGGTCATATTCCATTAGCGTTCAGCGAAAAAGGTTATCCGTACAAAAATCCCCTTATTATTCTCACTATATAAAGAGAAATTGACTTTGGGTCAAAAGTTTCTCCACAATGGGCATAACTATTTTTTTACCAACAAAAGAATACAATAATCACTTTTCAAGATTTAAAACAGGACCTGTATATTTTTCAAAAAAAAAATCTCAGAAACCTACAATATCATCTTACCCAAAAGCCCTCCTCATCCATTTTAACAGTAAAAAATCACATCGAACACATCCAACTAGAGGTCTGAGACAAGGAGATCCTCTGTCTCCGTACCTCTTTCTTCTATGTGCTGAAGGGTTCTCGGCTCTTCTTAGAAGAGAGGAAAGCTTATCCAACATCCCAGGGTTACAACTCAATAAATATTGTCCTAACCTTACTCATCTCTTTTTTGCAGATGATAACATGATTTTTATCAAAGCTGAAGCCAAGGAAATAGAAGCTCTCAAAAGAGTTCTGGAGGAGTACGAACAAGCTTCAGGCCAGACCATCAATCTGGACAAATCAACCTTTATGACCAGCAAGAATATGAAGCCTGAAGATCAAGGGAGGTGTGAAAAAGCCCTGGGTATCAAAAGAACGGAGTCTCTAGGATTTTACCTAGGGATGCCGTCTCAAGTTGGGAGAAACAAAAAAAAAAAAAGCTTTCAGAAGGATCAAAGACAGAGTTGA

mRNA sequence

ATGATTGTTTCGTCTGACAAAACCCGTCCATATTCCTTTGTGACCAGTCTGGTTGACGGATACGACCCGATTTCTTTCCAATTGGTCATTACTCTTCGGATTTTAGATGATAACATGATTTTTATCAAAGCTGAAGCCAAGGAAATAGAAGCTCTCAAAAGAGTTCTGGAGGAGTACGAACAAGCTTCAGGCCAGACCATCAATCTGGACAAATCAACCTTTATGACCAGCAAGAATATGAAGCCTGAAGATCAAGGGAGGTGTGAAAAAGCCCTGGGTATCAAAAGAACGGAGTCTCTAGGATTTTACCTAGGGATGCCGTCTCAAGTTGGGAGAAACAAAAAAAAAAAAAGCTTTCAGAAGGATCAAAGACAGAGTTGA

Coding sequence (CDS)

ATGATTGTTTCGTCTGACAAAACCCGTCCATATTCCTTTGTGACCAGTCTGGTTGACGGATACGACCCGATTTCTTTCCAATTGGTCATTACTCTTCGGATTTTAGATGATAACATGATTTTTATCAAAGCTGAAGCCAAGGAAATAGAAGCTCTCAAAAGAGTTCTGGAGGAGTACGAACAAGCTTCAGGCCAGACCATCAATCTGGACAAATCAACCTTTATGACCAGCAAGAATATGAAGCCTGAAGATCAAGGGAGGTGTGAAAAAGCCCTGGGTATCAAAAGAACGGAGTCTCTAGGATTTTACCTAGGGATGCCGTCTCAAGTTGGGAGAAACAAAAAAAAAAAAAGCTTTCAGAAGGATCAAAGACAGAGTTGA

Protein sequence

MIVSSDKTRPYSFVTSLVDGYDPISFQLVITLRILDDNMIFIKAEAKEIEALKRVLEEYEQASGQTINLDKSTFMTSKNMKPEDQGRCEKALGIKRTESLGFYLGMPSQVGRNKKKKSFQKDQRQS

Homology

[Close]

BLAST of Lcy02g011390 vs. ExPASy TrEMBL
Match: A0A6J1DUG8 (uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024135 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 36  DDNMIFIKAEAKEIEALKRVLEEYEQA-SGQTINLDKSTFMTSKNMKPEDQGRCEKALGI 95
           DD ++F KA      ++K +LE YE+A SGQ INLDKS F+ SKN K +  G   + L +
Sbjct: 503 DDCLLFFKASTGNCRSIKGILESYEKASSGQCINLDKSMFIVSKNTKEQMVGVIRQELMV 562

Query: 96  KRTESLGFYLGMPSQVGRNKKK 117
             TESLG YLG+PSQ GRNK++
Sbjct: 563 NHTESLGQYLGLPSQTGRNKRQ 584

[Close]

BLAST of Lcy02g011390 vs. ExPASy TrEMBL
Match: A0A2Z6NEB9 (Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_103550 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 32  LRILDDNMIFIKAEAKEIEALKRVLEEYEQASGQTINLDKSTFMTSKNMKPEDQGRCEKA 91
           L   DD  +F +A   E+  L R+L  YEQASGQ +NLDKS    S+NM    +    + 
Sbjct: 577 LLFADDCFLFCRANVAEVNELLRILHTYEQASGQEVNLDKSKVFISRNMSQAAKEDLSRI 636

Query: 92  LGIKRTESLGFYLGMPSQVGRNKKKK-SFQKDQ 124
           LG+K     G YLG+PS VGR+KK   S+ KD+
Sbjct: 637 LGVKLVLGTGIYLGLPSMVGRSKKALFSYIKDR 669

[Close]

BLAST of Lcy02g011390 vs. ExPASy TrEMBL
Match: A0A2Z6NEN7 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_259200 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 32  LRILDDNMIFIKAEAKEIEALKRVLEEYEQASGQTINLDKSTFMTSKNMKPEDQGRCEKA 91
           L   DD  +F +A A+E+  LK +L+ YE+ASGQ IN+ KS    S+N+  E Q    + 
Sbjct: 553 LLFADDCFLFCRANAEEVNQLKTILKTYEEASGQEINMSKSEVFFSRNLSVEAQEDLSRI 612

Query: 92  LGIKRTESLGFYLGMPSQVGRNKKK 117
           +G++     G YLG+PS VGR KK+
Sbjct: 613 MGVRHVLGTGKYLGLPSMVGRKKKE 637

[Close]

BLAST of Lcy02g011390 vs. ExPASy TrEMBL
Match: A0A2K3KW91 (Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g057511 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 32  LRILDDNMIFIKAEAKEIEALKRVLEEYEQASGQTINLDKSTFMTSKNMKPEDQGRCEKA 91
           L   DD  +F +A   E+  L  +L+ YE ASGQ INL KS    S+NM P D+    + 
Sbjct: 84  LLFADDCFLFCRASVAEVNQLMSILQTYELASGQEINLAKSEVFFSRNMSPADKEDLARI 143

Query: 92  LGIKRTESLGFYLGMPSQVGRNKK 116
           LG++     G YLG+PS +GR+KK
Sbjct: 144 LGVRHVLGTGIYLGLPSMIGRSKK 167

[Close]

BLAST of Lcy02g011390 vs. ExPASy TrEMBL
Match: A0A2K3MXC9 (Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g018590 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-09
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 0


Query: 1   MIVSSDKTRPYSFVTSLVDGYDPISFQLVITLRILDDNMIFIKAEAKEIEALKRVLEEYE 60
           ++V+   T P   VT +  G   +   L   L   DD  +F +A   E+  L R+L  YE
Sbjct: 50  ILVTEGLTSPLVEVTYM--GCASVEVPLRCHLLFADDCFLFCRANVTEVNQLLRILHTYE 109

Query: 61  QASGQTINLDKSTFMTSKNMKPEDQGRCEKALGIKRTESLGFYLGMPSQVGRNKKKK-SF 120
           QASGQ INL KS    S+N+   D+      LG++     G YLG+PS +GR+KK   S+
Sbjct: 110 QASGQEINLSKSEVFISRNISHVDKEDLSGILGVRHVLCTGTYLGLPSMIGRSKKNTFSY 169

Query: 121 QKDQ 124
            KD+
Sbjct: 170 IKDR 171

[Close]

BLAST of Lcy02g011390 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-11
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 36  DDNMIFIKAEAKEIEALKRVLEEYEQA-SGQTINLDKSTFMTSKNMKPEDQGRCEKALGI 95
           DD ++F KA      ++K +LE YE+A SGQ INLDKS F+ SKN K +  G   + L +
Sbjct: 503 DDCLLFFKASTGNCRSIKGILESYEKASSGQCINLDKSMFIVSKNTKEQMVGVIRQELMV 562

Query: 96  KRTESLGFYLGMPSQVGRNKKK 117
             TESLG YLG+PSQ GRNK++
Sbjct: 563 NHTESLGQYLGLPSQTGRNKRQ 584

[Close]

BLAST of Lcy02g011390 vs. NCBI nr
Match: XP_019175775.1 (PREDICTED: uncharacterized protein LOC109171099 [Ipomoea nil])

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-10
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 20  GYDPISFQLVITLRILDDNMIFIKAEAKEIEALKRVLEEYEQASGQTINLDKSTFMTSKN 79
           G  PIS      L   DD+++F KA  +E + +K+ L +YE+ SGQ +N  KS+   SKN
Sbjct: 144 GAPPISH-----LFFADDSLLFFKANIQEADVIKQCLAQYEKLSGQVVNYHKSSICYSKN 203

Query: 80  MKPEDQGRCEKALGIKRTESLGFYLGMPSQVGRNKK 116
           M+ ED       LG+ +  + G YLG+PS +GRNKK
Sbjct: 204 MRDEDMNDVAHVLGVAQAPNYGKYLGLPSFIGRNKK 234

[Close]

BLAST of Lcy02g011390 vs. NCBI nr
Match: XP_013650426.1 (uncharacterized protein LOC106354935 [Brassica napus])

HSP 1 Score: 75.5 bits (184), Expect = 3.7e-10
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 32  LRILDDNMIFIKAEAKEIEALKRVLEEYEQASGQTINLDKSTFMTSKNMKPEDQGRCEKA 91
           L   DD M F K   + +EALK V++ YE ASGQTIN  KST   SK   PE + R + +
Sbjct: 88  LLFADDTMFFTKTNERCVEALKVVIQRYEAASGQTINTGKSTITFSKKTPPEVRDRVKSS 147

Query: 92  LGIKRTESLGFYLGMPSQVGRNKK 116
           LGI +   +G YLG+P   GR KK
Sbjct: 148 LGISKEGGVGKYLGLPEHFGRKKK 171

[Close]

BLAST of Lcy02g011390 vs. NCBI nr
Match: XP_019195637.1 (PREDICTED: uncharacterized protein LOC109189300 [Ipomoea nil])

HSP 1 Score: 74.7 bits (182), Expect = 6.3e-10
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 0


Query: 20  GYDPISFQLVITLRILDDNMIFIKAEAKEIEALKRVLEEYEQASGQTINLDKSTFMTSKN 79
           G  PIS      L   DD+++F KA+ +E E +K+ L  YE+ SGQ +N  KS+   SKN
Sbjct: 552 GAPPISH-----LFFADDSLLFFKAKIQEAEVIKQCLTRYERLSGQVVNYHKSSICYSKN 611

Query: 80  MKPEDQGRCEKALGIKRTESLGFYLGMPSQVGRNKK 116
            K +D+      LG+ +  + G YLG+PS +GRNKK
Sbjct: 612 TKDDDRNDVAHILGVNQAPNYGKYLGLPSFIGRNKK 642

[Close]

BLAST of Lcy02g011390 vs. NCBI nr
Match: XP_019191056.1 (PREDICTED: uncharacterized protein LOC109185569 [Ipomoea nil])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 36  DDNMIFIKAEAKEIEALKRVLEEYEQASGQTINLDKSTFMTSKNMKPEDQGRCEKALGIK 95
           DD+++F KA A+E   +K  L EYE+ SGQ +N  KS+   SKN + E +      LG+ 
Sbjct: 643 DDSLLFFKANAQEAGVIKCCLSEYEKMSGQVVNYHKSSICYSKNTRDETREEVANILGVV 702

Query: 96  RTESLGFYLGMPSQVGRNKK 116
           +T++ G YLG+PS VGRN+K
Sbjct: 703 QTQNFGKYLGLPSFVGRNRK 722

The following BLAST results are available for this feature:

BLAST of Lcy02g011390 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g011390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUG8	1.6e-11	51.22	uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A2Z6NEB9	1.5e-09	44.09	Reverse transcriptase domain-containing protein OS=Trifolium subterraneum OX=390...	[more]
A0A2Z6NEN7	1.5e-09	42.35	Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_259200 PE=4 SV...	[more]
A0A2K3KW91	2.0e-09	42.86	Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g057511 PE=4 SV...	[more]
A0A2K3MXC9	3.4e-09	37.10	Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g018590 PE=4 SV...	[more]

BLAST of Lcy02g011390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157437.1	3.4e-11	51.22	uncharacterized protein LOC111024135 [Momordica charantia]	[more]
XP_019175775.1	2.8e-10	41.67	PREDICTED: uncharacterized protein LOC109171099 [Ipomoea nil]	[more]
XP_013650426.1	3.7e-10	47.62	uncharacterized protein LOC106354935 [Brassica napus]	[more]
XP_019195637.1	6.3e-10	41.67	PREDICTED: uncharacterized protein LOC109189300 [Ipomoea nil]	[more]
XP_019191056.1	1.1e-09	45.00	PREDICTED: uncharacterized protein LOC109185569 [Ipomoea nil]	[more]

BLAST of Lcy02g011390 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..126
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 29..121
None	No IPR available	PANTHER	PTHR33116:SF45	SUBFAMILY NOT NAMED	coord: 29..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g011390.1	Lcy02g011390.1	mRNA