Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGCTGAGGGGGCAGAGGAGGCAAAAGCCACTAAGGGTTTGAAGATAGCTCAGTATGGTCCTGCTGTCTCACATTTGTTTTTTGCAGACGATAGTTTGCTATTCTTCCAAGCTAAGGAGAGTGATGCTAGGGCTATTCAGGACATCCTTAACTGCTATGAACGTGTTTCGGGGCAAACTGTAAACCAGGATAAGTCCATTATCTCTTTCAGCCCGAGCACAGGTGTGAGGGATCGAGTTCAGGTTGGGAAAATCCTGCAGGTTCAGGCAACGACATTCCATCGCCAATATATGGGACTCCTGTCTTTTATGCCGCGAAACAGAACGAGGTCGTTGAGTTTCATTAAGGATCGAGTTTGACAGTAGATTCAAGGGGGGAAGGGTAAACTGTTCTCAGTAGGGGGTAGAGAAGTACTCCTAAAATCTATTGTTCAGGCGATCCCTTGCTACTCAATGAATTGCTTTCGATTGCCAAAGAAGTCGATCTTTGATATTAGTAGAGCCATGACCCGGTTCTGGTGGGGGGGGGGGGAGAAGGTAGATCGAGGAATTCATTGGGTGAGTTGGAAGTCTCTATGTAAGCCTAAGTGTTATGGTGGGATGAGCTTCAGGGACCTGGAGCTTTTCAACCAGGCATTGTTGGCAAAACAGTGTTGGAGAATTGTTCAGCATTCGTCCTCCTTTCTAGCGCGTGTGCTGAAGGGCATATATTATCCTTTCAAAGATTTCTTGAGGGCGGAGGTGGGTTTGAGGCCGTTCTTTATTTGGAGGAGCCTGTTGTGGGGGAGAGAGCTTCTAGAGAAGGGATTACGTTGGCGGATAGGTAATGGGGAAGTGGTTCTGGTGTATGAAGCGAATTGGATTCCTGATGATGGTGGTCTTAGAGTGCGGTCGCCTGTGACTCGCCCCTGA
mRNA sequence
ATGTATGCTGAGGGGGCAGAGGAGGCAAAAGCCACTAAGGGTTTGAAGATAGCTCAGTATGGTCCTGCTGTCTCACATTTGTTTTTTGCAGACGATAGTTTGCTATTCTTCCAAGCTAAGGAGAGTGATGCTAGGGCTATTCAGGACATCCTTAACTGCTATGAACGTGTTTCGGGGCAAACTGTAAACCAGGATAAGTCCATTATCTCTTTCAGCCCGAGCACAGGTGTGAGGGATCGAGTTCAGGTTGGGAAAATCCTGCAGGCGATCCCTTGCTACTCAATGAATTGCTTTCGATTGCCAAAGAAGTCGATCTTTGATATTAGTAGAGCCATGACCCGGTTCTGGTGGGGGGGGGGGGAGAAGGTAGATCGAGGAATTCATTGGGTGAGTTGGAAGTCTCTATGTAAGCCTAAGTGTTATGGTGGGATGAGCTTCAGGGACCTGGAGCTTTTCAACCAGGCATTGTTGGCAAAACAGTGTTGGAGAATTGTTCAGCATTCGTCCTCCTTTCTAGCGCGTGTGCTGAAGGGCATATATTATCCTTTCAAAGATTTCTTGAGGGCGGAGGTGGGTTTGAGGCCGTTCTTTATTTGGAGGAGCCTGTTGTGGGGGAGAGAGCTTCTAGAGAAGGGATTACGTTGGCGGATAGGTAATGGGGAAGTGGTTCTGGTGTATGAAGCGAATTGGATTCCTGATGATGGTGGTCTTAGAGTGCGGTCGCCTGTGACTCGCCCCTGA
Coding sequence (CDS)
ATGTATGCTGAGGGGGCAGAGGAGGCAAAAGCCACTAAGGGTTTGAAGATAGCTCAGTATGGTCCTGCTGTCTCACATTTGTTTTTTGCAGACGATAGTTTGCTATTCTTCCAAGCTAAGGAGAGTGATGCTAGGGCTATTCAGGACATCCTTAACTGCTATGAACGTGTTTCGGGGCAAACTGTAAACCAGGATAAGTCCATTATCTCTTTCAGCCCGAGCACAGGTGTGAGGGATCGAGTTCAGGTTGGGAAAATCCTGCAGGCGATCCCTTGCTACTCAATGAATTGCTTTCGATTGCCAAAGAAGTCGATCTTTGATATTAGTAGAGCCATGACCCGGTTCTGGTGGGGGGGGGGGGAGAAGGTAGATCGAGGAATTCATTGGGTGAGTTGGAAGTCTCTATGTAAGCCTAAGTGTTATGGTGGGATGAGCTTCAGGGACCTGGAGCTTTTCAACCAGGCATTGTTGGCAAAACAGTGTTGGAGAATTGTTCAGCATTCGTCCTCCTTTCTAGCGCGTGTGCTGAAGGGCATATATTATCCTTTCAAAGATTTCTTGAGGGCGGAGGTGGGTTTGAGGCCGTTCTTTATTTGGAGGAGCCTGTTGTGGGGGAGAGAGCTTCTAGAGAAGGGATTACGTTGGCGGATAGGTAATGGGGAAGTGGTTCTGGTGTATGAAGCGAATTGGATTCCTGATGATGGTGGTCTTAGAGTGCGGTCGCCTGTGACTCGCCCCTGA
Protein sequence
MYAEGAEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQDKSIISFSPSTGVRDRVQVGKILQAIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRGIHWVSWKSLCKPKCYGGMSFRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDFLRAEVGLRPFFIWRSLLWGRELLEKGLRWRIGNGEVVLVYEANWIPDDGGLRVRSPVTRP
Homology
BLAST of Lcy02g010980 vs. ExPASy Swiss-Prot
Match:
P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)
HSP 1 Score: 140.2 bits (352), Expect = 3.1e-32
Identity = 68/147 (46.26%), Postives = 91/147 (61.90%), Query Frame = 0
Query: 89 AIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRGIHWVSWKSLCKPK-CYGGMSFR 148
A+P Y+M+CFRL K ++ AMT FWW E R I WV+W+ LCK K GG+ FR
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCEN-KRKISWVAWQKLCKSKEDDGGLGFR 61
Query: 149 DLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDFLRAEVGLRPFFIWRSLLWGRE 208
DL FNQALLAKQ +RI+ + L+R+L+ Y+P + VG RP + WRS++ GRE
Sbjct: 62 DLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRE 121
Query: 209 LLEKGLRWRIGNGEVVLVYEANWIPDD 235
LL +GL IG+G V+ WI D+
Sbjct: 122 LLSRGLLRTIGDGIHTKVWLDRWIMDE 147
BLAST of Lcy02g010980 vs. ExPASy TrEMBL
Match:
A0A5E4FZN9 (PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1)
HSP 1 Score: 237.7 bits (605), Expect = 5.3e-59
Identity = 124/300 (41.33%), Postives = 163/300 (54.33%), Query Frame = 0
Query: 5 GAEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQ 64
GAE G+++A+ GP+V+HL FADDS+LF +A RA++ + YE VSGQ +N
Sbjct: 589 GAERRGDLVGVQVARGGPSVTHLLFADDSILFMKATNEACRALETLFQTYEEVSGQQINY 648
Query: 65 DKSIISFSPS-------------------------------------------------- 124
KS S SP+
Sbjct: 649 SKSAFSLSPNATRADFDMIKGVLNVPVVQCHEKYLGLPTIAGKGRKQLFQHLKDKLWKHI 708
Query: 125 TGVRDRV--QVGK------ILQAIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRG 184
+G ++++ + GK +LQAIP YSM+CFR+PK +++ M RFWW K RG
Sbjct: 709 SGWKEKLLSRAGKEILMKAVLQAIPTYSMSCFRIPKGLCKELNGIMARFWWAKA-KDKRG 768
Query: 185 IHWVSWKSLCKPKCYGGMSFRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDF 244
IHWV W+ LCK K GG+ FRDLE FNQALLAKQCWRI++ S +AR+ + Y+P F
Sbjct: 769 IHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPF 828
Query: 245 LRAEVGLRPFFIWRSLLWGRELLEKGLRWRIGNGEVVLVYEANWIPDDGGLRVRSPVTRP 247
L AEVG P FIWRSL WG+ELL KGLRWR+GNG + VY W+P ++ SP P
Sbjct: 829 LEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGNGVSIQVYTDKWLPAPSFFKIMSPPQLP 887
BLAST of Lcy02g010980 vs. ExPASy TrEMBL
Match:
A0A6J1DYS7 (uncharacterized protein LOC111025497 OS=Momordica charantia OX=3673 GN=LOC111025497 PE=4 SV=1)
HSP 1 Score: 234.6 bits (597), Expect = 4.5e-58
Identity = 126/281 (44.84%), Postives = 161/281 (57.30%), Query Frame = 0
Query: 5 GAEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQ 64
GA+E + G+K+++ GP +SHLFFADDSLLFF+A + R I+DIL YE+ S QT+N
Sbjct: 125 GAKEQRLLSGMKLSRQGPPISHLFFADDSLLFFKATPAKGRVIKDILGLYEKASSQTINL 184
Query: 65 DKSIISFSPSTGVRDRVQVGKILQA-----------------------IPCYSMNC---F 124
DKS++S S T +V++ +L+ P C
Sbjct: 185 DKSVLSISKGTPPDVQVRLCALLEVRHEEYHSRYLVYQPLCRAIGGDIFPFSRTACGIIS 244
Query: 125 RLPKKSIFD-------------ISRAMTRFWWGGGEKVDRGIHWVSWKSLCKPKCYGGMS 184
++ K+S F + M RFWWG G+ D IHWVSWK +C KC GG+
Sbjct: 245 KVGKESSFQWVEKRFLRNLVHKMHMVMARFWWGDGD-ADHKIHWVSWKRMCLRKCMGGLG 304
Query: 185 FRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDFLRAEVGLRPFFIWRSLLWG 244
FRDLE FNQALLAKQ W+I SS LA VLK Y+ DF+ A VG R FIWRSLLWG
Sbjct: 305 FRDLEFFNQALLAKQGWQIFSDPSSLLAWVLKFKYFKNCDFIEASVGSRASFIWRSLLWG 364
Query: 245 RELLEKGLRWRIGNGEVVLVYEANWIPDDGGLRVRSPVTRP 247
+LL GLRWR+GNG + +YE NWIP DG L V+S + P
Sbjct: 365 CDLLRIGLRWRVGNGANIRIYEDNWIPRDGILSVQSRPSLP 404
BLAST of Lcy02g010980 vs. ExPASy TrEMBL
Match:
M5W5F3 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026368mg PE=4 SV=1)
HSP 1 Score: 233.8 bits (595), Expect = 7.7e-58
Identity = 119/300 (39.67%), Postives = 157/300 (52.33%), Query Frame = 0
Query: 5 GAEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQ 64
GAE G+++A+ P+V+HL FADDS+LF +A D A++ + YE V+GQ +N
Sbjct: 360 GAERRGDLVGVQVARGAPSVTHLLFADDSILFMKATNKDCMALETLFQTYEEVTGQQINY 419
Query: 65 DKSIISFSPSTGVRD--------------------------------------------- 124
KS +S SP+ D
Sbjct: 420 SKSALSLSPNATRADFDMIEGVLNVPVVRCHENYLGLPTIAGKGRKQLFQHLKDKLWKHI 479
Query: 125 -------------RVQVGKILQAIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRG 184
+ + +LQAIP YSM+CFR+PK +++ M RFWW K RG
Sbjct: 480 SGWKEKLLSRAGKEILIKAVLQAIPTYSMSCFRIPKGLCKELNGIMARFWWAKA-KDKRG 539
Query: 185 IHWVSWKSLCKPKCYGGMSFRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDF 244
IHWV W+ LCK K GG+ FRDLE FNQALLAKQCWRI++ S +AR+ + Y+P F
Sbjct: 540 IHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPF 599
Query: 245 LRAEVGLRPFFIWRSLLWGRELLEKGLRWRIGNGEVVLVYEANWIPDDGGLRVRSPVTRP 247
L AEVG P FIWRSL WG+ELL KGLRWR+G+G + VY W+P ++ SP P
Sbjct: 600 LEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLP 658
BLAST of Lcy02g010980 vs. ExPASy TrEMBL
Match:
A0A251NPF0 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G123900 PE=4 SV=1)
HSP 1 Score: 233.8 bits (595), Expect = 7.7e-58
Identity = 119/300 (39.67%), Postives = 157/300 (52.33%), Query Frame = 0
Query: 5 GAEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQ 64
GAE G+++A+ P+V+HL FADDS+LF +A D A++ + YE V+GQ +N
Sbjct: 323 GAERRGDLVGVQVARGAPSVTHLLFADDSILFMKATNKDCMALETLFQTYEEVTGQQINY 382
Query: 65 DKSIISFSPSTGVRD--------------------------------------------- 124
KS +S SP+ D
Sbjct: 383 SKSALSLSPNATRADFDMIEGVLNVPVVRCHENYLGLPTIAGKGRKQLFQHLKDKLWKHI 442
Query: 125 -------------RVQVGKILQAIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRG 184
+ + +LQAIP YSM+CFR+PK +++ M RFWW K RG
Sbjct: 443 SGWKEKLLSRAGKEILIKAVLQAIPTYSMSCFRIPKGLCKELNGIMARFWWAKA-KDKRG 502
Query: 185 IHWVSWKSLCKPKCYGGMSFRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDF 244
IHWV W+ LCK K GG+ FRDLE FNQALLAKQCWRI++ S +AR+ + Y+P F
Sbjct: 503 IHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPF 562
Query: 245 LRAEVGLRPFFIWRSLLWGRELLEKGLRWRIGNGEVVLVYEANWIPDDGGLRVRSPVTRP 247
L AEVG P FIWRSL WG+ELL KGLRWR+G+G + VY W+P ++ SP P
Sbjct: 563 LEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLP 621
BLAST of Lcy02g010980 vs. ExPASy TrEMBL
Match:
M5WJW2 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G011200 PE=4 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 2.7e-55
Identity = 115/300 (38.33%), Postives = 155/300 (51.67%), Query Frame = 0
Query: 5 GAEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQ 64
GAE G+++A+ P+V+HL FADDS+LF +A A++ + YE V+GQ +N
Sbjct: 610 GAERRGDLVGVQVARGAPSVTHLLFADDSILFMKATNKACMALETLFQTYEEVTGQQINY 669
Query: 65 DKSIISFSPSTGVRD--------------------------------------------- 124
KS +S SP+ D
Sbjct: 670 SKSALSLSPNATRADFDMIEGGLNVPVVRCHENYLGLPTIAGKGRKQLFQHLKDKLWKHI 729
Query: 125 -------------RVQVGKILQAIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRG 184
+ + +LQAIP YSM+CF++PK +++ M RFWW K RG
Sbjct: 730 SGWKEKLLSRAGKEILIKAVLQAIPTYSMSCFQIPKGLCKELNGIMARFWWAKA-KDKRG 789
Query: 185 IHWVSWKSLCKPKCYGGMSFRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDF 244
IHWV W+ LCK K GG+ FRDLE FNQALLAKQCWRI++ S +AR+ + Y+P F
Sbjct: 790 IHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPF 849
Query: 245 LRAEVGLRPFFIWRSLLWGRELLEKGLRWRIGNGEVVLVYEANWIPDDGGLRVRSPVTRP 247
L AEVG P FIW SL WG+ELL KG+RWR+G+G + VY W+P ++ SP P
Sbjct: 850 LEAEVGTNPSFIWGSLQWGKELLNKGVRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLP 908
BLAST of Lcy02g010980 vs. NCBI nr
Match:
VVA32947.1 (PREDICTED: retrotransposon [Prunus dulcis])
HSP 1 Score: 237.7 bits (605), Expect = 1.1e-58
Identity = 124/300 (41.33%), Postives = 163/300 (54.33%), Query Frame = 0
Query: 5 GAEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQ 64
GAE G+++A+ GP+V+HL FADDS+LF +A RA++ + YE VSGQ +N
Sbjct: 589 GAERRGDLVGVQVARGGPSVTHLLFADDSILFMKATNEACRALETLFQTYEEVSGQQINY 648
Query: 65 DKSIISFSPS-------------------------------------------------- 124
KS S SP+
Sbjct: 649 SKSAFSLSPNATRADFDMIKGVLNVPVVQCHEKYLGLPTIAGKGRKQLFQHLKDKLWKHI 708
Query: 125 TGVRDRV--QVGK------ILQAIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRG 184
+G ++++ + GK +LQAIP YSM+CFR+PK +++ M RFWW K RG
Sbjct: 709 SGWKEKLLSRAGKEILMKAVLQAIPTYSMSCFRIPKGLCKELNGIMARFWWAKA-KDKRG 768
Query: 185 IHWVSWKSLCKPKCYGGMSFRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDF 244
IHWV W+ LCK K GG+ FRDLE FNQALLAKQCWRI++ S +AR+ + Y+P F
Sbjct: 769 IHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPF 828
Query: 245 LRAEVGLRPFFIWRSLLWGRELLEKGLRWRIGNGEVVLVYEANWIPDDGGLRVRSPVTRP 247
L AEVG P FIWRSL WG+ELL KGLRWR+GNG + VY W+P ++ SP P
Sbjct: 829 LEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGNGVSIQVYTDKWLPAPSFFKIMSPPQLP 887
BLAST of Lcy02g010980 vs. NCBI nr
Match:
XP_022159057.1 (uncharacterized protein LOC111025497 [Momordica charantia])
HSP 1 Score: 234.6 bits (597), Expect = 9.3e-58
Identity = 126/281 (44.84%), Postives = 161/281 (57.30%), Query Frame = 0
Query: 5 GAEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQ 64
GA+E + G+K+++ GP +SHLFFADDSLLFF+A + R I+DIL YE+ S QT+N
Sbjct: 125 GAKEQRLLSGMKLSRQGPPISHLFFADDSLLFFKATPAKGRVIKDILGLYEKASSQTINL 184
Query: 65 DKSIISFSPSTGVRDRVQVGKILQA-----------------------IPCYSMNC---F 124
DKS++S S T +V++ +L+ P C
Sbjct: 185 DKSVLSISKGTPPDVQVRLCALLEVRHEEYHSRYLVYQPLCRAIGGDIFPFSRTACGIIS 244
Query: 125 RLPKKSIFD-------------ISRAMTRFWWGGGEKVDRGIHWVSWKSLCKPKCYGGMS 184
++ K+S F + M RFWWG G+ D IHWVSWK +C KC GG+
Sbjct: 245 KVGKESSFQWVEKRFLRNLVHKMHMVMARFWWGDGD-ADHKIHWVSWKRMCLRKCMGGLG 304
Query: 185 FRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDFLRAEVGLRPFFIWRSLLWG 244
FRDLE FNQALLAKQ W+I SS LA VLK Y+ DF+ A VG R FIWRSLLWG
Sbjct: 305 FRDLEFFNQALLAKQGWQIFSDPSSLLAWVLKFKYFKNCDFIEASVGSRASFIWRSLLWG 364
Query: 245 RELLEKGLRWRIGNGEVVLVYEANWIPDDGGLRVRSPVTRP 247
+LL GLRWR+GNG + +YE NWIP DG L V+S + P
Sbjct: 365 CDLLRIGLRWRVGNGANIRIYEDNWIPRDGILSVQSRPSLP 404
BLAST of Lcy02g010980 vs. NCBI nr
Match:
ONI01138.1 (hypothetical protein PRUPE_6G123900 [Prunus persica])
HSP 1 Score: 233.8 bits (595), Expect = 1.6e-57
Identity = 119/300 (39.67%), Postives = 157/300 (52.33%), Query Frame = 0
Query: 5 GAEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQ 64
GAE G+++A+ P+V+HL FADDS+LF +A D A++ + YE V+GQ +N
Sbjct: 323 GAERRGDLVGVQVARGAPSVTHLLFADDSILFMKATNKDCMALETLFQTYEEVTGQQINY 382
Query: 65 DKSIISFSPSTGVRD--------------------------------------------- 124
KS +S SP+ D
Sbjct: 383 SKSALSLSPNATRADFDMIEGVLNVPVVRCHENYLGLPTIAGKGRKQLFQHLKDKLWKHI 442
Query: 125 -------------RVQVGKILQAIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRG 184
+ + +LQAIP YSM+CFR+PK +++ M RFWW K RG
Sbjct: 443 SGWKEKLLSRAGKEILIKAVLQAIPTYSMSCFRIPKGLCKELNGIMARFWWAKA-KDKRG 502
Query: 185 IHWVSWKSLCKPKCYGGMSFRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDF 244
IHWV W+ LCK K GG+ FRDLE FNQALLAKQCWRI++ S +AR+ + Y+P F
Sbjct: 503 IHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPF 562
Query: 245 LRAEVGLRPFFIWRSLLWGRELLEKGLRWRIGNGEVVLVYEANWIPDDGGLRVRSPVTRP 247
L AEVG P FIWRSL WG+ELL KGLRWR+G+G + VY W+P ++ SP P
Sbjct: 563 LEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLP 621
BLAST of Lcy02g010980 vs. NCBI nr
Match:
ONI09819.1 (hypothetical protein PRUPE_4G011200 [Prunus persica])
HSP 1 Score: 225.3 bits (573), Expect = 5.7e-55
Identity = 115/300 (38.33%), Postives = 155/300 (51.67%), Query Frame = 0
Query: 5 GAEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQ 64
GAE G+++A+ P+V+HL FADDS+LF +A A++ + YE V+GQ +N
Sbjct: 610 GAERRGDLVGVQVARGAPSVTHLLFADDSILFMKATNKACMALETLFQTYEEVTGQQINY 669
Query: 65 DKSIISFSPSTGVRD--------------------------------------------- 124
KS +S SP+ D
Sbjct: 670 SKSALSLSPNATRADFDMIEGGLNVPVVRCHENYLGLPTIAGKGRKQLFQHLKDKLWKHI 729
Query: 125 -------------RVQVGKILQAIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRG 184
+ + +LQAIP YSM+CF++PK +++ M RFWW K RG
Sbjct: 730 SGWKEKLLSRAGKEILIKAVLQAIPTYSMSCFQIPKGLCKELNGIMARFWWAKA-KDKRG 789
Query: 185 IHWVSWKSLCKPKCYGGMSFRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDF 244
IHWV W+ LCK K GG+ FRDLE FNQALLAKQCWRI++ S +AR+ + Y+P F
Sbjct: 790 IHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHPSVPF 849
Query: 245 LRAEVGLRPFFIWRSLLWGRELLEKGLRWRIGNGEVVLVYEANWIPDDGGLRVRSPVTRP 247
L AEVG P FIW SL WG+ELL KG+RWR+G+G + VY W+P ++ SP P
Sbjct: 850 LEAEVGTNPSFIWGSLQWGKELLNKGVRWRVGSGVSIQVYTDKWLPAPSCFKIMSPPQLP 908
BLAST of Lcy02g010980 vs. NCBI nr
Match:
AFP55557.1 (non-ltr retroelement reverse transcriptase [Rosa rugosa])
HSP 1 Score: 216.9 bits (551), Expect = 2.0e-52
Identity = 119/298 (39.93%), Postives = 163/298 (54.70%), Query Frame = 0
Query: 6 AEEAKATKGLKIAQYGPAVSHLFFADDSLLFFQAKESDARAIQDILNCYERVSGQTVNQD 65
AE + G+ IA+ P+VSHLF+ADDSLLF A +D A+++I + YE SGQ +N+D
Sbjct: 946 AEREQQIHGVAIARGAPSVSHLFYADDSLLFCDATVTDCMALKNIFSTYEAASGQKINKD 1005
Query: 66 KSIISFSPST---------------------------------------GVRDRV----- 125
KS I FSP + + DRV
Sbjct: 1006 KSAICFSPKSPAAIKEACSAILDMPVVPCHERYLGLPTVSGKDKKKLFQSLPDRVWNRVH 1065
Query: 126 --------QVGK------ILQAIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRGI 185
+ GK + QAIP Y+M+ F+LP + I++ + RFWW G++ +GI
Sbjct: 1066 GWEGKLLSKAGKEVLIKTVAQAIPNYTMSVFQLPAGTSDAINKCVARFWW--GKEGGKGI 1125
Query: 186 HWVSWKSLCKPKCYGGMSFRDLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDFL 245
HW W LC K GG+ FRDL LFNQALL KQ WR++ + S +AR+LK Y+P+ DF+
Sbjct: 1126 HWRRWSDLCFSKKDGGLGFRDLSLFNQALLGKQGWRLMMYPDSLVARMLKAKYFPWDDFM 1185
BLAST of Lcy02g010980 vs. TAIR 10
Match:
ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 140.2 bits (352), Expect = 2.2e-33
Identity = 68/147 (46.26%), Postives = 91/147 (61.90%), Query Frame = 0
Query: 89 AIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRGIHWVSWKSLCKPK-CYGGMSFR 148
A+P Y+M+CFRL K ++ AMT FWW E R I WV+W+ LCK K GG+ FR
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCEN-KRKISWVAWQKLCKSKEDDGGLGFR 61
Query: 149 DLELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDFLRAEVGLRPFFIWRSLLWGRE 208
DL FNQALLAKQ +RI+ + L+R+L+ Y+P + VG RP + WRS++ GRE
Sbjct: 62 DLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRE 121
Query: 209 LLEKGLRWRIGNGEVVLVYEANWIPDD 235
LL +GL IG+G V+ WI D+
Sbjct: 122 LLSRGLLRTIGDGIHTKVWLDRWIMDE 147
BLAST of Lcy02g010980 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 130.2 bits (326), Expect = 2.3e-30
Identity = 59/155 (38.06%), Postives = 90/155 (58.06%), Query Frame = 0
Query: 89 AIPCYSMNCFRLPKKSIFDISRAMTRFWWGGGEKVDRGIHWVSWKSLCKPKCYGGMSFRD 148
A+P Y+M CF LPK I + FWW ++ +G+HW +W L K GG+ F+D
Sbjct: 2 ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEA-KGMHWKAWDHLSCYKAEGGIGFKD 61
Query: 149 LELFNQALLAKQCWRIVQHSSSFLARVLKGIYYPFKDFLRAEVGLRPFFIWRSLLWGREL 208
+E FN ALL KQ WR++ S +A+V K Y+ D L A +G RP F+W+S+ +E+
Sbjct: 62 IEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEI 121
Query: 209 LEKGLRWRIGNGEVVLVYEANWI---PDDGGLRVR 241
L +G R +GNGE ++++ W+ P LR++
Sbjct: 122 LRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQ 155
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| P93295 | 3.1e-32 | 46.26 | Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5E4FZN9 | 5.3e-59 | 41.33 | PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1 | [more] |
| A0A6J1DYS7 | 4.5e-58 | 44.84 | uncharacterized protein LOC111025497 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
| M5W5F3 | 7.7e-58 | 39.67 | Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... | [more] |
| A0A251NPF0 | 7.7e-58 | 39.67 | Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU... | [more] |
| M5WJW2 | 2.7e-55 | 38.33 | Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| VVA32947.1 | 1.1e-58 | 41.33 | PREDICTED: retrotransposon [Prunus dulcis] | [more] |
| XP_022159057.1 | 9.3e-58 | 44.84 | uncharacterized protein LOC111025497 [Momordica charantia] | [more] |
| ONI01138.1 | 1.6e-57 | 39.67 | hypothetical protein PRUPE_6G123900 [Prunus persica] | [more] |
| ONI09819.1 | 5.7e-55 | 38.33 | hypothetical protein PRUPE_4G011200 [Prunus persica] | [more] |
| AFP55557.1 | 2.0e-52 | 39.93 | non-ltr retroelement reverse transcriptase [Rosa rugosa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| ATMG00310.1 | 2.2e-33 | 46.26 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |
| AT4G29090.1 | 2.3e-30 | 38.06 | Ribonuclease H-like superfamily protein | [more] |
