Lcy02g010970 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g010970
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	cucumber peeling cupredoxin-like
Location	Chr02: 33038082 .. 33038423 (+)
RNA-Seq Expression	Lcy02g010970
Synteny	Lcy02g010970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCGAGCAGCAGTTGAACCGTGCCTGTGGCTGGGATACCACTACCGCGCCCAGATCTCTAACTTGTTGGCTTCCCTTCTCTGATTTAGATCTGGGTCTTTAATTTATTTTTTTTAAGAAATTATCTCTGCCGTCGAAACTGTGTGAGCCTGAAGATTAACGTCACTCACAGACAGGGCATCTCGAAGAGCATGGGAGATTCTTCCGACAAAGCTCCGGCGACCAAACGGAATCTGCACCCGACACCATCGTCCCTTCCAGCTTCGATAATCCCAAAAACGACGTTGCTGATACTGATAGCAACAAGAAGGAAGCTTCAGGCTCTGTTTCGCTCTAG

mRNA sequence

ATGGCGGCCGAGCAGCAGTTGAACCGTGCCTGTGGCTGGGATACCACTACCGCGCCCAGATCTCTAACTTGTTGGCTTCCCTTCTCTGATTTAGATCTGGGGCATCTCGAAGAGCATGGGAGATTCTTCCGACAAAGCTCCGGCGACCAAACGGAATCTGCACCCGACACCATCGTCCCTTCCAGCTTCGATAATCCCAAAAACGACGTTGCTGATACTGATAGCAACAAGAAGGAAGCTTCAGGCTCTGTTTCGCTCTAG

Coding sequence (CDS)

ATGGCGGCCGAGCAGCAGTTGAACCGTGCCTGTGGCTGGGATACCACTACCGCGCCCAGATCTCTAACTTGTTGGCTTCCCTTCTCTGATTTAGATCTGGGGCATCTCGAAGAGCATGGGAGATTCTTCCGACAAAGCTCCGGCGACCAAACGGAATCTGCACCCGACACCATCGTCCCTTCCAGCTTCGATAATCCCAAAAACGACGTTGCTGATACTGATAGCAACAAGAAGGAAGCTTCAGGCTCTGTTTCGCTCTAG

Protein sequence

MAAEQQLNRACGWDTTTAPRSLTCWLPFSDLDLGHLEEHGRFFRQSSGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL

Homology

[Close]

BLAST of Lcy02g010970 vs. ExPASy TrEMBL
Match: A0A6J1JXY1 (cucumber peeling cupredoxin-like OS=Cucurbita maxima OX=3661 GN=LOC111490768 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.9e-09
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 47  SGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL 87
           SGD+TESAPDTIVPSSFDNP+NDVAD DS+KKE+SGSVSL
Sbjct: 177 SGDRTESAPDTIVPSSFDNPRNDVADNDSDKKESSGSVSL 216

[Close]

BLAST of Lcy02g010970 vs. ExPASy TrEMBL
Match: A0A6J1H378 (cucumber peeling cupredoxin-like OS=Cucurbita moschata OX=3662 GN=LOC111459269 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.1e-09
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 47  SGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL 87
           SGD+TESAPDTIVPSSFDNP+NDVAD DS+KKE+SGS+SL
Sbjct: 177 SGDRTESAPDTIVPSSFDNPRNDVADNDSDKKESSGSISL 216

[Close]

BLAST of Lcy02g010970 vs. ExPASy TrEMBL
Match: A0A6J1DFG7 (blue copper protein OS=Momordica charantia OX=3673 GN=LOC111020584 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.2e-07
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 37  EEHGRFFRQSSGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL 87
           E  G      +GD+TESAPDTI+PSSFD+P+NDVADTD   KEASGSVSL
Sbjct: 167 EAPGPAVAPDTGDETESAPDTIIPSSFDHPRNDVADTDD--KEASGSVSL 214

[Close]

BLAST of Lcy02g010970 vs. ExPASy TrEMBL
Match: A0A0A0KJZ8 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G429060 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 47  SGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL 87
           +GDQTESAPDTI+PSSFDNP+NDVAD ++N KE+SGS SL
Sbjct: 171 TGDQTESAPDTIIPSSFDNPRNDVAD-NNNDKESSGSNSL 209

[Close]

BLAST of Lcy02g010970 vs. ExPASy TrEMBL
Match: A0A6J1FXQ3 (blue copper protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448143 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 9.1e-06
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 47  SGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL 87
           +GDQTESAPDTIVPS+FDNP NDVAD+D   KE SGSVSL
Sbjct: 177 TGDQTESAPDTIVPSNFDNPVNDVADSD---KEVSGSVSL 213

[Close]

BLAST of Lcy02g010970 vs. NCBI nr
Match: XP_022995137.1 (cucumber peeling cupredoxin-like [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 8.1e-09
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 47  SGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL 87
           SGD+TESAPDTIVPSSFDNP+NDVAD DS+KKE+SGSVSL
Sbjct: 177 SGDRTESAPDTIVPSSFDNPRNDVADNDSDKKESSGSVSL 216

[Close]

BLAST of Lcy02g010970 vs. NCBI nr
Match: KAG6605950.1 (hypothetical protein SDJN03_03267, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 47  SGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL 87
           SGD+TESAPDTIVPSSFDNP+NDVAD DS+KKE+SGS+SL
Sbjct: 177 SGDRTESAPDTIVPSSFDNPRNDVADNDSDKKESSGSISL 216

[Close]

BLAST of Lcy02g010970 vs. NCBI nr
Match: XP_022957854.1 (cucumber peeling cupredoxin-like [Cucurbita moschata] >XP_023532735.1 cucumber peeling cupredoxin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 0


Query: 47  SGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL 87
           SGD+TESAPDTIVPSSFDNP+NDVAD DS+KKE+SGS+SL
Sbjct: 177 SGDRTESAPDTIVPSSFDNPRNDVADNDSDKKESSGSISL 216

[Close]

BLAST of Lcy02g010970 vs. NCBI nr
Match: XP_022152980.1 (blue copper protein [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-06
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 37  EEHGRFFRQSSGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL 87
           E  G      +GD+TESAPDTI+PSSFD+P+NDVADTD   KEASGSVSL
Sbjct: 167 EAPGPAVAPDTGDETESAPDTIIPSSFDHPRNDVADTDD--KEASGSVSL 214

[Close]

BLAST of Lcy02g010970 vs. NCBI nr
Match: XP_023512118.1 (uncharacterized protein LOC111776932 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-06
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 47  SGDQTESAPDTIVPSSFDNPKNDVADTDSNKKEASGSVSL 87
           +GDQTESAPDTIVPS+FDNP+NDVAD+D   KE SGSVSL
Sbjct: 231 TGDQTESAPDTIVPSNFDNPQNDVADSD---KEVSGSVSL 267

The following BLAST results are available for this feature:

BLAST of Lcy02g010970 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g010970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXY1	3.9e-09	87.50	cucumber peeling cupredoxin-like OS=Cucurbita maxima OX=3661 GN=LOC111490768 PE=...	[more]
A0A6J1H378	5.1e-09	85.00	cucumber peeling cupredoxin-like OS=Cucurbita moschata OX=3662 GN=LOC111459269 P...	[more]
A0A6J1DFG7	8.2e-07	68.00	blue copper protein OS=Momordica charantia OX=3673 GN=LOC111020584 PE=4 SV=1	[more]
A0A0A0KJZ8	7.0e-06	77.50	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G429060...	[more]
A0A6J1FXQ3	9.1e-06	80.00	blue copper protein-like OS=Cucurbita moschata OX=3662 GN=LOC111448143 PE=4 SV=1	[more]

BLAST of Lcy02g010970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995137.1	8.1e-09	87.50	cucumber peeling cupredoxin-like [Cucurbita maxima]	[more]
KAG6605950.1	1.1e-08	85.00	hypothetical protein SDJN03_03267, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022957854.1	1.1e-08	85.00	cucumber peeling cupredoxin-like [Cucurbita moschata] >XP_023532735.1 cucumber p...	[more]
XP_022152980.1	1.7e-06	68.00	blue copper protein [Momordica charantia]	[more]
XP_023512118.1	8.4e-06	80.00	uncharacterized protein LOC111776932 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy02g010970 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g010970.1	Lcy02g010970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity