Lcy02g010930 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g010930
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H
Location	Chr02: 32963465 .. 32964793 (-)
RNA-Seq Expression	Lcy02g010930
Synteny	Lcy02g010930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTACATATGTATTATTGCAGTCAATTCTTCATGAAGGGAAGTATTAAGCTGTGTCTCTCTATTACTGTTGAACATTTATTTTCTTTTAGCTCATTTTGTCTTTTGTGTAACAGAATATTCGCAGCTTGCTTTGCAAGTTGGGACTGAATTTTGCTGATTTTTTAAGTGCAATTGAATTGGAACCAATCCCTCCCTAACCTGGTGCAGTATTCTTTGGGGAAGAGATTTGTTTAAAAAAGGATATAGATGGAGGATAGGGAACGGGCAGCAGGTGACCATAGACCAAGATCCGTGGCTCCCCTCCAATGGGGCAATAACTCCTATTCTCACAAAAGATATCCTAAAAGGCAGGAAAGTCCAGGACATTATGGACTCCCAAGGAGCATGGAAGGAAGATGTTATCAAAGAAAATTTTACAGCTATTGATGCATCAACAATCCTCAATTCAATCTCAGGGGGCCCAAATCAGAAGGACGAAATCATATGTAATGGAGAAAAAAAAAGGAGCCTTTACGGTCAAAAGTGCATACCATCTCGCAGTCCAAATTGACTCAAATCAAAAGGCAGCCCCGTCTAACAATCATGCCCATGACCCTATGTGGAGGAAATTCTGGAATATAAAGGCTATTCCCAAAGCCAAGATTTGTGTGTGGCGCAACATTCAGAACTCACTCCCTACGGGCTCAAACATTAATCTCAAGGGCATTTACACTAACCCAATTTGTTTTTGGTGCAGGAAACACACGGAATCAGTGGAGCATATCTTTTGGGGTTGTAAGTTCTCTAAATTCGCTTGGAGAAAAATTATCCCCCTAATGGATGGCTTGTTTTCGTTAAACAGGGGTCAGTGGACAGCGCGAGACCATTGGAGGTGGATGGAAGAAAATCTCGGAACTGAAGATCTGGAGAAAGCGACCTTAGTTCTATGGAGTTTATGGAACCAGAGAAACCAATCAATCCAGTCGAATCAAGATCCCGATTTCAAATATCTAACAAGGGCGGTTAATGCAAACATCAAGGAGGAGAAAAAGAGAGTTTCCGCTAACCTGTTCAGCCTTTCGTGTCTCAACCCCTCAGGATCGGAGAGCCTCTCGAGTCATGCATCGTGGGAGCCGCCCCCAGCAGGTGTGTGGAAGCTTAACGTGGATGCTTCTCGGTCGGAAATGTCCCAAACGAGCGGTCTCGGGTGGATTTTGCGTGACTCTACAGGATCTCCAATCTGTGGAGGATTGAAGAGGATCAACTCAAGCTGGTCCATCAAAATGCTGGAGATGAAGGCTATTCTAGAAGGGCTGAAGAGTTTACAGTCCAAGTCGATTTGAAATTCC

mRNA sequence

CTTACATATGTATTATTGCAGTCAATTCTTCATGAAGGGAAGTATTAAGCTGTGTCTCTCTATTACTGTTGAACATTTATTTTCTTTTAGCTCATTTTGTCTTTTGTGTAACAGAATATTCGCAGCTTGCTTTGCAAGTTGGGACTGAATTTTGCTGATTTTTTAAGTGCAATTGAATTGGAACCAATCCCTCCCTAACCTGGTGCAGTATTCTTTGGGGAAGAGATTTGTTTAAAAAAGGATATAGATGGAGGATAGGGAACGGGCAGCAGGTGACCATAGACCAAGATCCGTGGCTCCCCTCCAATGGGGCAATAACTCCTATTCTCACAAAAGATATCCTAAAAGGCAGGAAAGTCCAGGACATTATGGACTCCCAAGGAGCATGGAAGGAAGATGTTATCAAAGAAAATTTTACAGCTATTGATGCATCAACAATCCTCAATTCAATCTCAGGGGGCCCAAATCAGAAGGACGAAATCATATGTAATGGAGAAAAAAAAAGGAGCCTTTACGGTCAAAAGTGCATACCATCTCGCAGTCCAAATTGACTCAAATCAAAAGGCAGCCCCGTCTAACAATCATGCCCATGACCCTATGTGGAGGAAATTCTGGAATATAAAGGCTATTCCCAAAGCCAAGATTTGTGTGTGGCGCAACATTCAGAACTCACTCCCTACGGGCTCAAACATTAATCTCAAGGGCATTTACACTAACCCAATTTGTTTTTGGTGCAGGAAACACACGGAATCAGTGGAGCATATCTTTTGGGGTTGTAAGTTCTCTAAATTCGCTTGGAGAAAAATTATCCCCCTAATGGATGGCTTGTTTTCGTTAAACAGGGGTCAGTGGACAGCGCGAGACCATTGGAGGTGGATGGAAGAAAATCTCGGAACTGAAGATCTGGAGAAAGCGACCTTAGTTCTATGGAGTTTATGGAACCAGAGAAACCAATCAATCCAGTCGAATCAAGATCCCGATTTCAAATATCTAACAAGGGCGGTTAATGCAAACATCAAGGAGGAGAAAAAGAGAGTTTCCGCTAACCTGTTCAGCCTTTCGTGTCTCAACCCCTCAGGATCGGAGAGCCTCTCGAGTCATGCATCGTGGGAGCCGCCCCCAGCAGGTGTGTGGAAGCTTAACGTGGATGCTTCTCGGTCGGAAATGTCCCAAACGAGCGGTCTCGGGTGGATTTTGCGTGACTCTACAGGATCTCCAATCTGTGGAGGATTGAAGAGGATCAACTCAAGCTGGTCCATCAAAATGCTGGAGATGAAGGCTATTCTAGAAGGGCTGAAGAGTTTACAGTCCAAGTCGATTTGAAATTCC

Coding sequence (CDS)

ATGTTATCAAAGAAAATTTTACAGCTATTGATGCATCAACAATCCTCAATTCAATCTCAGGGGGCCCAAATCAGAAGGACGAAATCATATGTAATGGAGAAAAAAAAAGGAGCCTTTACGGTCAAAAGTGCATACCATCTCGCAGTCCAAATTGACTCAAATCAAAAGGCAGCCCCGTCTAACAATCATGCCCATGACCCTATGTGGAGGAAATTCTGGAATATAAAGGCTATTCCCAAAGCCAAGATTTGTGTGTGGCGCAACATTCAGAACTCACTCCCTACGGGCTCAAACATTAATCTCAAGGGCATTTACACTAACCCAATTTGTTTTTGGTGCAGGAAACACACGGAATCAGTGGAGCATATCTTTTGGGGTTGTAAGTTCTCTAAATTCGCTTGGAGAAAAATTATCCCCCTAATGGATGGCTTGTTTTCGTTAAACAGGGGTCAGTGGACAGCGCGAGACCATTGGAGGTGGATGGAAGAAAATCTCGGAACTGAAGATCTGGAGAAAGCGACCTTAGTTCTATGGAGTTTATGGAACCAGAGAAACCAATCAATCCAGTCGAATCAAGATCCCGATTTCAAATATCTAACAAGGGCGGTTAATGCAAACATCAAGGAGGAGAAAAAGAGAGTTTCCGCTAACCTGTTCAGCCTTTCGTGTCTCAACCCCTCAGGATCGGAGAGCCTCTCGAGTCATGCATCGTGGGAGCCGCCCCCAGCAGGTGTGTGGAAGCTTAACGTGGATGCTTCTCGGTCGGAAATGTCCCAAACGAGCGGTCTCGGGTGGATTTTGCGTGACTCTACAGGATCTCCAATCTGTGGAGGATTGAAGAGGATCAACTCAAGCTGGTCCATCAAAATGCTGGAGATGAAGGCTATTCTAGAAGGGCTGAAGAGTTTACAGTCCAAGTCGATTTGA

Protein sequence

MLSKKILQLLMHQQSSIQSQGAQIRRTKSYVMEKKKGAFTVKSAYHLAVQIDSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQNSLPTGSNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMDGLFSLNRGQWTARDHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSKSI

Homology

[Close]

BLAST of Lcy02g010930 vs. ExPASy TrEMBL
Match: A0A2K3NXF2 (Ribonuclease H OS=Trifolium pratense OX=57577 GN=L195_g004217 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.9e-27
Identity = 87/281 (30.96%), Postives = 147/281 (52.31%), Query Frame = 0


Query: 35   KKGAFTVKSAYHLAVQ---IDSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQN 94
            K G +TVKS Y+  ++   ++S+Q A  SNNH  +P W K WNIK  PK    +WR + N
Sbjct: 1190 KDGNYTVKSGYNAQMEWANVESSQ-AQTSNNHKDEPFWNKIWNIKVPPKQIHLLWRIMHN 1249

Query: 95   SLPTGSNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMDGLFSLNRGQ 154
            ++P  +N+  KGI  + +C  C K  E+++H+F  C+++   W    PL   + + N   
Sbjct: 1250 AIPVKTNLIKKGILIDSLCPRCNKGPETIDHLFLHCEWAHLVW-FYSPLT--IKTTNIQL 1309

Query: 155  WTARDHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQD-PDFKYLTRAVNANIKEE 214
             T  +  ++M  N   E ++  + + +S+W  RN+ +  N+D P  + + RA+  NI + 
Sbjct: 1310 HTFHEWIKYMLHNTTKESMQILSSITYSIWFARNKKVFQNKDIPVNETVDRALK-NIHDF 1369

Query: 215  KKRVSANLFSLSCLNPSGSE--SLSSH-ASWEPPPAGVWKLNVDASRSEMSQTSGLGWIL 274
            +  ++      +C  P+ S+  S++ H  SW PPP    KLNVDA  S+     GLGW+L
Sbjct: 1370 QHHLTE-----ACFAPTNSKPPSVNRHNTSWNPPPRNFLKLNVDAHLSDDGHW-GLGWVL 1429

Query: 275  RDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSKSI 309
            R   G  +    K +  S  + M E   + E L  ++++ +
Sbjct: 1430 RGVDGRCVGAVTKVLKGSDDVAMAEATGLREALTWVETQHL 1459

[Close]

BLAST of Lcy02g010930 vs. ExPASy TrEMBL
Match: A0A2N9GQR6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29715 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-26
Identity = 78/270 (28.89%), Postives = 130/270 (48.15%), Query Frame = 0


Query: 35  KKGAFTVKSAYHLAVQIDSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQNSLP 94
           K+G F+VKSAY L V   ++Q A+ S++     +W   W ++  PK K+ +W+  QN +P
Sbjct: 621 KRGIFSVKSAYRLQVTNQNSQAASSSSSMMAQNLWSSLWAVQVPPKVKLFIWKACQNIIP 680

Query: 95  TGSNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMDGLFSLNRGQWTA 154
           T + +  KGI     C WC    E+ +H+ WGC+F++  W    P+  G+   +   +T 
Sbjct: 681 TQTKLFEKGITHLYSCLWCEDEPETSDHVLWGCEFAQKVWNS-CPVPIGIHQRSLKLFT- 740

Query: 155 RDHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTR---AVNANIKEEK 214
            D       +L T  +E A    W+LW  RN+++   + P    + +   A+ ++  E K
Sbjct: 741 -DVIGSFISDLQTPVIEIAFTTAWALWKARNETVWEAKVPGVDAICQEAVALASDFLEAK 800

Query: 215 KRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDST 274
            +V              +  L     W+ PPA VWKLN+    S +S   GLG ++RDS 
Sbjct: 801 SKVMVT-----------TGGLGGPFRWQRPPADVWKLNMACHSSSISSRIGLGILIRDSE 860

Query: 275 GSPICGGLKRINSSWSIKMLEMKAILEGLK 302
           G+ +      +  +  +  +  KA+L  LK
Sbjct: 861 GAVMAVLEDSLMRNNELLQVHAKAVLVALK 876

[Close]

BLAST of Lcy02g010930 vs. ExPASy TrEMBL
Match: A0A803P623 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.7e-26
Identity = 75/274 (27.37%), Postives = 134/274 (48.91%), Query Frame = 0


Query: 37   GAFTVKSAYHLAVQIDSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQNSLPTG 96
            G +TV+S YHLA  +     ++ S++ +    W+ FW+++   K KI  WR I ++LP  
Sbjct: 1107 GIYTVQSGYHLASSLAEQPHSSSSSSES--KWWKSFWSLQLPEKIKIFAWRVIHDALPVA 1166

Query: 97   SNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMD--GLFSLNRGQWTA 156
            +++  + + T+  C  CR+  ESV H+F+GC ++K  WR +    D     S+ +G    
Sbjct: 1167 TSLVKRKVITDAACSVCRQAWESVGHVFFGCHYAKNVWRLMHQSFDWKKAISMYKG---- 1226

Query: 157  RDHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDP--------DFKYLTRAVNAN 216
             D+ +++  +    + E+    LW +W++RNQ + S +            +YL     A 
Sbjct: 1227 -DYLKFLASSHTKAEFEQIICTLWCIWSERNQVVHSKKSRSASALAAFSLQYLDNYRAAQ 1286

Query: 217  IKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWI 276
            +K      S+ +          S S +  A W+PPP G  KLN+DA+  + S   G+G +
Sbjct: 1287 LKYRPPATSSQV---------PSPSTAPSAPWQPPPMGTLKLNIDAAFDKTSSKIGVGAV 1346

Query: 277  LRDSTGSPICGGLKRINSSWSIKMLEMKAILEGL 301
            +R+  G  I      I  +++   +E KA+  G+
Sbjct: 1347 IRNYVGQVIAALSMPIVGNFASHEMEAKAMFHGI 1364

[Close]

BLAST of Lcy02g010930 vs. ExPASy TrEMBL
Match: A0A803PZC5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-25
Identity = 74/265 (27.92%), Postives = 121/265 (45.66%), Query Frame = 0


Query: 37  GAFTVKSAYHLAVQIDSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQNSLPTG 96
           G + V S YH A  ++     +PS +      W+ FW+++   K KI VWR +  +LP  
Sbjct: 559 GIYNVHSGYHFAASLEETNLCSPSTSPT--AWWKYFWDLQLPQKIKIFVWRVLHEALPVA 618

Query: 97  SNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMDGLFSLNRG-QWTAR 156
           +++  + I T+  C  CR   ES+ H  +GCK++K  WR      +  F  N+  Q    
Sbjct: 619 TSLVRRKIITDSTCSLCRLAWESIGHALFGCKYAKAVWR----ASNFHFDWNKATQMHKG 678

Query: 157 DHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVS 216
           D    +       ++E    +LW +W++RN+ +   Q     +L    N  +   +    
Sbjct: 679 DFLIHLTTLHSVTEMESIFCILWCIWSERNRVVHGQQAKPATHLASFANNYMSNYRSAQL 738

Query: 217 ANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDSTGSPI 276
                L  + PS + +   H  W+PPP G  K+NVDA+        GLG ++R+STG  I
Sbjct: 739 KYRPQLHHVPPSSAPTQPVHIPWQPPPIGELKMNVDAAVDSSKNRIGLGAVIRNSTGQVI 798

Query: 277 CGGLKRINSSWSIKMLEMKAILEGL 301
                 I  +++   +E KAI   L
Sbjct: 799 AALSMPIIGNFASHEMEAKAIFHSL 817

[Close]

BLAST of Lcy02g010930 vs. ExPASy TrEMBL
Match: A0A803Q6Y1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.3e-25
Identity = 72/274 (26.28%), Postives = 133/274 (48.54%), Query Frame = 0


Query: 37   GAFTVKSAYHLAVQIDSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQNSLPTG 96
            G +TV++ YHLA  ++       S ++++ P W+ FW ++   K KI  WR   ++LP  
Sbjct: 2705 GLYTVQTGYHLASSLEDADFC--SGSYSNSPWWKFFWALQLPQKIKIFTWRVFHDALPVA 2764

Query: 97   SNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMD--GLFSLNRGQWTA 156
            + +  + + T+  C  CR+  E+V H  +GCK++K  WR      D     S+ +G    
Sbjct: 2765 TGLVKRKVITDSTCSICRQAWETVGHALFGCKYAKAVWRISGFNFDWYKASSMKKG---- 2824

Query: 157  RDHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRV 216
             D+   +       ++E+   +LWS+W +RN+ +  ++    + L+      +     R 
Sbjct: 2825 -DYLVHLSSIHSKSEMERIICMLWSIWTERNRVVHGHKAKQARELSTFAENYLL--NYRA 2884

Query: 217  SANLFSLSCLNPSGSESLSSHAS--------WEPPPAGVWKLNVDASRSEMSQTSGLGWI 276
            + + +      P  +    +H S        W+PPP  ++KLN+DA+    + T+GLG I
Sbjct: 2885 ALSKYQQPLQKPVAAIGNGTHPSTSNGHNPPWKPPPPAIFKLNIDAANDRTTHTTGLGAI 2944

Query: 277  LRDSTGSPICGGLKRINSSWSIKMLEMKAILEGL 301
            +RDSTG  +    K++  S+    +E  A+  G+
Sbjct: 2945 IRDSTGFIVAAFSKKLLGSFDPHEMEALALFHGV 2969

[Close]

BLAST of Lcy02g010930 vs. NCBI nr
Match: XP_030958321.1 (uncharacterized protein LOC115980180 [Quercus lobata])

HSP 1 Score: 140.6 bits (353), Expect = 2.3e-29
Identity = 82/270 (30.37%), Postives = 130/270 (48.15%), Query Frame = 0


Query: 32  MEKKKGAFTVKSAYHLAVQI-DSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQ 91
           M   +G FT+KSAYH+A  + D       S      P+W++ W++    K KI  WR   
Sbjct: 47  MGNTRGEFTMKSAYHIAFSMFDGKDDVGSSKGDPLKPLWKRLWHLNLPAKIKIFAWRACI 106

Query: 92  NSLPTGSNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMDGLFSLNRG 151
           N LP+   +  +GI T+  C  C K  ES+ H    C F+   W   +   DG+  L R 
Sbjct: 107 NGLPSRETLCARGIITDKDCPICNKELESIHHALLHCDFAIQVWSFSV---DGVQWLQRN 166

Query: 152 QWTARDHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEE 211
            WT  D   +   +  +  LE    ++W++W  RN++I  +       + +    +IK+ 
Sbjct: 167 NWTFPDLAMYFLTHKSSHVLESFLTIVWTIWYNRNRTIHKDICSHPSQVWQMARNSIKDF 226

Query: 212 KKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDS 271
                 NL       PS   +LSS   W PPP GV+K+NVD + SE+  TS +G I+RD 
Sbjct: 227 TNVAYTNL-------PSSRPTLSS--CWSPPPPGVFKINVDRASSELEGTSSIGVIIRDC 286

Query: 272 TGSPICGGLKRINSSWSIKMLEMKAILEGL 301
            G  +    K + S +  +++E+ A+ +G+
Sbjct: 287 KGDTVAALCKPLQSHYPAELVEIIALEQGI 304

[Close]

BLAST of Lcy02g010930 vs. NCBI nr
Match: PNY07715.1 (ribonuclease H [Trifolium pratense])

HSP 1 Score: 132.1 bits (331), Expect = 8.2e-27
Identity = 87/281 (30.96%), Postives = 147/281 (52.31%), Query Frame = 0


Query: 35   KKGAFTVKSAYHLAVQ---IDSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQN 94
            K G +TVKS Y+  ++   ++S+Q A  SNNH  +P W K WNIK  PK    +WR + N
Sbjct: 1190 KDGNYTVKSGYNAQMEWANVESSQ-AQTSNNHKDEPFWNKIWNIKVPPKQIHLLWRIMHN 1249

Query: 95   SLPTGSNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMDGLFSLNRGQ 154
            ++P  +N+  KGI  + +C  C K  E+++H+F  C+++   W    PL   + + N   
Sbjct: 1250 AIPVKTNLIKKGILIDSLCPRCNKGPETIDHLFLHCEWAHLVW-FYSPLT--IKTTNIQL 1309

Query: 155  WTARDHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQD-PDFKYLTRAVNANIKEE 214
             T  +  ++M  N   E ++  + + +S+W  RN+ +  N+D P  + + RA+  NI + 
Sbjct: 1310 HTFHEWIKYMLHNTTKESMQILSSITYSIWFARNKKVFQNKDIPVNETVDRALK-NIHDF 1369

Query: 215  KKRVSANLFSLSCLNPSGSE--SLSSH-ASWEPPPAGVWKLNVDASRSEMSQTSGLGWIL 274
            +  ++      +C  P+ S+  S++ H  SW PPP    KLNVDA  S+     GLGW+L
Sbjct: 1370 QHHLTE-----ACFAPTNSKPPSVNRHNTSWNPPPRNFLKLNVDAHLSDDGHW-GLGWVL 1429

Query: 275  RDSTGSPICGGLKRINSSWSIKMLEMKAILEGLKSLQSKSI 309
            R   G  +    K +  S  + M E   + E L  ++++ +
Sbjct: 1430 RGVDGRCVGAVTKVLKGSDDVAMAEATGLREALTWVETQHL 1459

[Close]

BLAST of Lcy02g010930 vs. NCBI nr
Match: XP_030943489.1 (uncharacterized protein LOC115968280 [Quercus lobata])

HSP 1 Score: 131.3 bits (329), Expect = 1.4e-26
Identity = 80/275 (29.09%), Postives = 128/275 (46.55%), Query Frame = 0


Query: 35  KKGAFTVKSAYHLAVQIDSNQKAAP-SNNHAHDPMWRKFWNIKAIPKAKICVWRNIQNSL 94
           KKG FTVKSAY++A+ +++       S+     P+W++ W++K   K +I  WR   N L
Sbjct: 50  KKGEFTVKSAYYIALNLNNEADIEECSSGDCRAPLWKRIWHLKIPSKIRIFGWRACLNGL 109

Query: 95  PTGSNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMDGLFSLNRGQWT 154
           PT  N+  +GI  + +C  C K  ES+ H    C+F+K  W       +   +++  QW 
Sbjct: 110 PTAENLKKRGINLSELCPCCGKDPESITHSLLRCEFAKKVWN---CWQECPINISSSQWD 169

Query: 155 ARDHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKR 214
             D    + E     DLE   ++ WS+W  RNQ +  +               +++ K  
Sbjct: 170 FSDVALKILEQGTAADLEVFFVMAWSIWYNRNQVVHESTCQLPNQTWNFAKRYLQDYKDA 229

Query: 215 VSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDSTGS 274
            S+          SG +      SW PPPAGV+K+NVD + SE  + S +G I+RDS G 
Sbjct: 230 TSS----------SGQDKTCVSNSWHPPPAGVFKINVDGATSENGRNSSVGVIIRDSKGI 289

Query: 275 PICGGLKRINSSWSIKMLEMKAILEGLKSLQSKSI 309
            +      ++  +S    E  A+  G+   Q   +
Sbjct: 290 IVAACANYLSGQFSAFETETLAVECGILLAQEMGL 311

[Close]

BLAST of Lcy02g010930 vs. NCBI nr
Match: XP_023915006.1 (uncharacterized protein LOC112026546 [Quercus suber])

HSP 1 Score: 131.0 bits (328), Expect = 1.8e-26
Identity = 83/267 (31.09%), Postives = 129/267 (48.31%), Query Frame = 0


Query: 35  KKGAFTVKSAYHLAVQI-DSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQNSL 94
           KKG+FTVKSAY++A  I DSN+    S+++    +W++ W+ K  PK KI  WR   N L
Sbjct: 157 KKGSFTVKSAYYIASSILDSNEDGESSSSNEMTGLWKRIWHQKIPPKLKIFAWRLCVNGL 216

Query: 95  PTGSNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMDGLFSLNRGQWT 154
           PT  N++ +G++ +  C  C K  E+  H    C  +K  W       +G   L+ G   
Sbjct: 217 PTMFNLSHRGVHCSCFCPLCDKAIETTAHALLHCDHAKLTWAH---WHNGFAVLSAGTQE 276

Query: 155 ARDHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKR 214
             D    + +N  +  LE    V WS+W  RNQ++          +       + E K+ 
Sbjct: 277 PVDIALDIIKNDSSSALELFIAVAWSIWWNRNQALHEGSGAPPSQIWDMAIRILGEYKEA 336

Query: 215 VSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDSTGS 274
            S +   L          +SS  +W PPPAG  K+NVD + S+  + S  G I+RDS GS
Sbjct: 337 CSFSNLPL----------VSSLINWRPPPAGFTKINVDGAASDDGRPSSTGVIIRDSQGS 396

Query: 275 PICGGLKRINSSWSIKMLEMKAILEGL 301
            I    + ++S +   + E  A+ +G+
Sbjct: 397 SIAASCRVLSSPFPADISEALALQDGV 410

[Close]

BLAST of Lcy02g010930 vs. NCBI nr
Match: XP_030495196.1 (uncharacterized protein LOC115710989 [Cannabis sativa])

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-25
Identity = 75/274 (27.37%), Postives = 134/274 (48.91%), Query Frame = 0


Query: 37   GAFTVKSAYHLAVQIDSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQNSLPTG 96
            G +TV+S YHLA  +     ++ S++ +    W+ FW+++   K KI  WR I ++LP  
Sbjct: 775  GIYTVQSGYHLASSLAEQPHSSSSSSES--KWWKSFWSLQLPEKIKIFAWRVIHDALPVA 834

Query: 97   SNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMD--GLFSLNRGQWTA 156
            +++  + + T+  C  CR+  ESV H+F+GC ++K  WR +    D     S+ +G    
Sbjct: 835  TSLVKRKVITDAACSVCRQAWESVGHVFFGCHYAKNVWRLMHQSFDWKKAISMYKG---- 894

Query: 157  RDHWRWMEENLGTEDLEKATLVLWSLWNQRNQSIQSNQDP--------DFKYLTRAVNAN 216
             D+ +++  +    + E+    LW +W++RNQ + S +            +YL     A 
Sbjct: 895  -DYLKFLASSHTKAEFEQIICTLWCIWSERNQVVHSKKSRSASALAAFSLQYLDNYRAAQ 954

Query: 217  IKEEKKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWI 276
            +K      S+ +          S S +  A W+PPP G  KLN+DA+  + S   G+G +
Sbjct: 955  LKYRPPATSSQV---------PSPSTAPSAPWQPPPMGTLKLNIDAAFDKTSSKIGVGAV 1014

Query: 277  LRDSTGSPICGGLKRINSSWSIKMLEMKAILEGL 301
            +R+  G  I      I  +++   +E KA+  G+
Sbjct: 1015 IRNYVGQVIAALSMPIVGNFASHEMEAKAMFHGI 1032

[Close]

BLAST of Lcy02g010930 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-19
Identity = 73/280 (26.07%), Postives = 113/280 (40.36%), Query Frame = 0


Query: 37  GAFTVKSAYHLAVQIDSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQNSLPTG 96
           G +TV+S Y L     S    A +  H    +  + WN+  +PK K  +WR +  +L T 
Sbjct: 127 GEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATT 186

Query: 97  SNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMDGLFSLNRGQWTARD 156
             +  +G+  +P C  C +  ES+ H  + C F+  AWR    L D   SL R Q  + D
Sbjct: 187 ERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWR----LSDS--SLIRNQLMSND 246

Query: 157 HWRWMEENLGT----------EDLEKATLV--LWSLWNQRNQSIQSNQDPDFKYLTRAVN 216
                EEN+             D  K   V  +W +W  RN  +       F     + +
Sbjct: 247 ----FEENISNILNFVQDTTMSDFHKLLPVWLIWRIWKARNNVV-------FNKFRESPS 306

Query: 217 ANIKEEKKRVS--ANLFSLSCLNPSGSESLSSH-ASWEPPPAGVWKLNVDASRSEMSQTS 276
             +   K       N        PS +  ++ +   W  PPA   K N DA        +
Sbjct: 307 KTVLSAKAETHDWLNATQSHKKTPSPTRQIAENKIEWRNPPATYVKCNFDAGFDVQKLEA 366

Query: 277 GLGWILRDSTGSPICGGLKRINSSWSIKMLEMKAILEGLK 302
             GWI+R+  G+PI  G  ++  + +    E KA+L  L+
Sbjct: 367 TGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKALLAALQ 389

[Close]

BLAST of Lcy02g010930 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 86.3 bits (212), Expect = 4.8e-17
Identity = 62/259 (23.94%), Postives = 109/259 (42.08%), Query Frame = 0


Query: 41  VKSAYHLAVQIDSNQKAAPSNNHAHDPMWRKFWNIKAIPKAKICVWRNIQNSLPTGSNIN 100
           ++S Y +A   D  ++ A         + +  W +   PK K  +WR +  +L T + + 
Sbjct: 6   LRSGYWVATHEDLLEEEAIQPPPGSTEVKQAIWKLHVAPKIKHFLWRCVTGALATNTRLR 65

Query: 101 LKGIYTNPICFWCRKHTESVEHIFWGCKFSKFAWRKIIPLMDGLFSLNRGQWTARDHWRW 160
            + I  +PIC  C    E++ HI + C +++  WR    ++   +          +    
Sbjct: 66  SRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQ 125

Query: 161 MEENLGTEDLEK--ATLVLWSLWNQRNQSI--QSNQDPDFKY------LTRAVNANIKEE 220
           + +   T  L++     ++W LW  RN  +  Q  Q PD++        T  +NAN   E
Sbjct: 126 LSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANETTE 185

Query: 221 KKRVSANLFSLSCLNPSGSESLSSHASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDS 280
              V          NP  +    S + W PPP G  K N D+  ++ S  +  GW +R+ 
Sbjct: 186 NTNVHV------ATNPIQTSRRDS-SQWNPPPEGWVKCNFDSGYTQGSPYTRSGWTIREC 245

Query: 281 TGS-PICGGLKRINSSWSI 289
            G   +CG  K  +S+ S+
Sbjct: 246 NGHIVLCGNAKLQSSTCSL 257

[Close]

BLAST of Lcy02g010930 vs. TAIR 10
Match: AT2G02520.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-07
Identity = 40/177 (22.60%), Postives = 73/177 (41.24%), Query Frame = 0


Query: 69  WRKFWNIKAIPKAKICVWRNIQNSLPTGSNINLKGIYTNPICFWCRKHTESVEHIFWGCK 128
           ++  W    IPK     W N+++ L T   +   G    P+C +C  H E+ +H+F+ C+
Sbjct: 44  FKAIWFKGKIPKHAFIAWVNMRHRLHTKDRMISWGFIFPPLCLFCNTHDETRQHLFFDCE 103

Query: 129 FSKFAWRKIIPLMDGLFSLNRGQWTARDHWRWMEENLGTEDLEKATLV-------LWSLW 188
           F++  W      +     L        D  RW++     +D    T++       ++++W
Sbjct: 104 FAREVWIYFTSRVHVFPPL-----LFEDGIRWLKN--PCQDKNVTTILRLSHHASVYTIW 163

Query: 189 NQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSHASW 239
            +RN  +  +        +R   A I E K  +  +L  LS     G   +S  A+W
Sbjct: 164 KERNARLHDS-------ASRPAAALILEIKSVIRCHLDPLSRAQRLGPNRISFLATW 206

[Close]

BLAST of Lcy02g010930 vs. TAIR 10
Match: AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-07
Identity = 20/59 (33.90%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 73  WNIKAIPKAKICVWRNIQNSLPTGSNINLKGIYTNPICFWCRKHTESVEHIFWGCKFSK 132
           W++K  PK K+ +W+ + N+LP G+ +  + I   P C  CR   E++ HI + C F++
Sbjct: 10  WSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDF-ETITHILFNCPFAQ 67

[Close]

BLAST of Lcy02g010930 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 6.5e-06
Identity = 31/127 (24.41%), Postives = 54/127 (42.52%), Query Frame = 0


Query: 176 VLWSLWNQRNQSIQSNQDPDFKYLTRAVNANIKEEKKRVSANLFSLSCLNPSGSESLSSH 235
           ++W +W   N  + ++    F+        + KE       N       N + +   S +
Sbjct: 47  LMWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTN----EQQNGNRNADPSRN 106

Query: 236 ASWEPPPAGVWKLNVDASRSEMSQTSGLGWILRDSTGSPICGGLKRINSSWSIKMLEMKA 295
             W PP     K N DAS  E +  SGLGWILR+S G+ I  G+ +     + +  E   
Sbjct: 107 TKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECST 166

Query: 296 ILEGLKS 303
           ++  +++
Sbjct: 167 LIWAIQA 169

The following BLAST results are available for this feature:

BLAST of Lcy02g010930 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g010930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K3NXF2	3.9e-27	30.96	Ribonuclease H OS=Trifolium pratense OX=57577 GN=L195_g004217 PE=4 SV=1	[more]
A0A2N9GQR6	1.1e-26	28.89	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29715 PE=4 SV=1	[more]
A0A803P623	5.7e-26	27.37	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803PZC5	2.2e-25	27.92	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803Q6Y1	6.3e-25	26.28	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lcy02g010930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030958321.1	2.3e-29	30.37	uncharacterized protein LOC115980180 [Quercus lobata]	[more]
PNY07715.1	8.2e-27	30.96	ribonuclease H [Trifolium pratense]	[more]
XP_030943489.1	1.4e-26	29.09	uncharacterized protein LOC115968280 [Quercus lobata]	[more]
XP_023915006.1	1.8e-26	31.09	uncharacterized protein LOC112026546 [Quercus suber]	[more]
XP_030495196.1	1.2e-25	27.37	uncharacterized protein LOC115710989 [Cannabis sativa]	[more]

BLAST of Lcy02g010930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09510.1	1.3e-19	26.07	Ribonuclease H-like superfamily protein	[more]
AT2G02650.1	4.8e-17	23.94	Ribonuclease H-like superfamily protein	[more]
AT2G02520.1	1.2e-07	22.60	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT3G26855.1	2.6e-07	33.90	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT5G65005.1	6.5e-06	24.41	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 249..304 e-value: 1.9E-7 score: 31.0
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 39..134 e-value: 5.4E-17 score: 62.3
None	No IPR available	PANTHER	PTHR46736:SF6	SUBFAMILY NOT NAMED	coord: 32..273
None	No IPR available	PANTHER	PTHR46736	FAMILY NOT NAMED	coord: 32..273

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g010930.1	Lcy02g010930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity