Lcy02g010900 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g010900
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr02: 32767522 .. 32768056 (-)
RNA-Seq Expression	Lcy02g010900
Synteny	Lcy02g010900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGATGAATGTTGAAAACCTTGATCCTCTCATGGAAGCAACCTCCCTATTCACTCACTTAACCAACGACGAAGCCTACCTCGAATTCACGCCATGGAGGTTGACGATAATTGCCTCAAACCATTCCTCTCGCATCGTTGCAACGCTCAAACTTTCCTTTCGATTCTTCACAACCTATTCCATCGACCAGAATCCTCACAGATACAGGATTTCCCTTCATCCCTTCTACCACGCCCTCTCGGTTGCCCGAAATTCTCATTCAATCACCATTCATCTTCTCCCAACCATACATCAAATGACCCTTACATTCGAGAATTCAAGTCAGTATTTAATCGATCTTGCTTCAGAATCTTGTTTCTTTTGCTTTCAAGAAACCCACACAACCAAATCTTGATTGTTTATTTGTTTTCTTTCCGCTGAATAGCACCTTTAGGGCGTGTCCCACACTTGCAGTTGCTACAACCATTGGTATCGCCACCTTCGCAAGGACAGGATTTAGGCGATATCGTATATGGAAAATATTTCACAATTAA

mRNA sequence

ATGCGGATGAATGTTGAAAACCTTGATCCTCTCATGGAAGCAACCTCCCTATTCACTCACTTAACCAACGACGAAGCCTACCTCGAATTCACGCCATGGAGGTTGACGATAATTGCCTCAAACCATTCCTCTCGCATCGTTGCAACGCTCAAACTTTCCTTTCGATTCTTCACAACCTATTCCATCGACCAGAATCCTCACAGATACAGGATTTCCCTTCATCCCTTCTACCACGCCCTCTCGGTTGCCCGAAATTCTCATTCAATCACCATTCATCTTCTCCCAACCATACATCAAATGACCCTTACATTCGAGAATTCAAGTCACACCTTTAGGGCGTGTCCCACACTTGCAGTTGCTACAACCATTGGTATCGCCACCTTCGCAAGGACAGGATTTAGGCGATATCGTATATGGAAAATATTTCACAATTAA

Coding sequence (CDS)

ATGCGGATGAATGTTGAAAACCTTGATCCTCTCATGGAAGCAACCTCCCTATTCACTCACTTAACCAACGACGAAGCCTACCTCGAATTCACGCCATGGAGGTTGACGATAATTGCCTCAAACCATTCCTCTCGCATCGTTGCAACGCTCAAACTTTCCTTTCGATTCTTCACAACCTATTCCATCGACCAGAATCCTCACAGATACAGGATTTCCCTTCATCCCTTCTACCACGCCCTCTCGGTTGCCCGAAATTCTCATTCAATCACCATTCATCTTCTCCCAACCATACATCAAATGACCCTTACATTCGAGAATTCAAGTCACACCTTTAGGGCGTGTCCCACACTTGCAGTTGCTACAACCATTGGTATCGCCACCTTCGCAAGGACAGGATTTAGGCGATATCGTATATGGAAAATATTTCACAATTAA

Protein sequence

MRMNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSIDQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSSHTFRACPTLAVATTIGIATFARTGFRRYRIWKIFHN

Homology

[Close]

BLAST of Lcy02g010900 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-13
Identity = 49/107 (45.79%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 3   MNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSI 62
           + +E  +PL++ATSL   +  D A ++FTP  L II SN S + VATL+LS R FT +S+
Sbjct: 4   VRLEQFEPLIDATSLLAQVAKD-ADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNFSV 63

Query: 63  DQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSSH 110
           D N    ++SL PF+ A+    +  S+TIHLL T +QM L FE  SH
Sbjct: 64  DHNKSS-KVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSH 108

[Close]

BLAST of Lcy02g010900 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 9.8e-13
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 3   MNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSI 62
           + ++N DPL++ATS    ++ D A L+FTP +  IIAS+ S R +ATL+LS ++FTT+S+
Sbjct: 4   VKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSV 63

Query: 63  DQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSS 109
           D N H  ++SL  F+ A+    +  S+TIHLL   +QM L F+  S
Sbjct: 64  D-NDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108

[Close]

BLAST of Lcy02g010900 vs. ExPASy TrEMBL
Match: A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 9.8e-13
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 3   MNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSI 62
           + ++N DPL++ATS    ++ D A L+FTP +  IIAS+ S R +ATL+LS ++FTT+S+
Sbjct: 4   VKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSV 63

Query: 63  DQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSS 109
           D N H  ++SL  F+ A+    +  S+TIHLL   +QM L F+  S
Sbjct: 64  D-NDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108

[Close]

BLAST of Lcy02g010900 vs. ExPASy TrEMBL
Match: A0A0A0K902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 42/106 (39.62%), Postives = 71/106 (66.98%), Query Frame = 0


Query: 3   MNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSI 62
           + + N DPL++ATS F  ++ D+A ++FTP +  II+S+ S R +ATL+LS ++FT++S+
Sbjct: 4   VKLTNFDPLLDATSFFAQISFDDADVKFTPSKFFIISSHRSPRFIATLQLSPQWFTSFSV 63

Query: 63  DQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSS 109
           D + H  ++SL  F+ A+    +  S+TIHLL   +Q+ L F+  S
Sbjct: 64  DHD-HSSKVSLESFHDAILDGGSFASMTIHLLDKTNQIILRFDTPS 108

[Close]

BLAST of Lcy02g010900 vs. ExPASy TrEMBL
Match: A0A1S4E4N8 (uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.1e-11
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 3   MNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSI 62
           + +++ DPL +ATS    +   EA ++FTP   +IIASN S R VA L+++   F  Y +
Sbjct: 6   VRLKDFDPLFDATSRLAQIAR-EADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINYKV 65

Query: 63  DQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSSH 110
           D N H  RISL  F+ AL     S S+TIHLL  I Q+ L FE+SSH
Sbjct: 66  D-NDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSH 110

[Close]

BLAST of Lcy02g010900 vs. NCBI nr
Match: XP_008458682.1 (PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 7.0e-13
Identity = 49/107 (45.79%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 3   MNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSI 62
           + +E  +PL++ATSL   +  D A ++FTP  L II SN S + VATL+LS R FT +S+
Sbjct: 4   VRLEQFEPLIDATSLLAQVAKD-ADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNFSV 63

Query: 63  DQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSSH 110
           D N    ++SL PF+ A+    +  S+TIHLL T +QM L FE  SH
Sbjct: 64  DHNKSS-KVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSH 108

[Close]

BLAST of Lcy02g010900 vs. NCBI nr
Match: XP_008464344.1 (PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-12
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 3   MNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSI 62
           + ++N DPL++ATS    ++ D A L+FTP +  IIAS+ S R +ATL+LS ++FTT+S+
Sbjct: 4   VKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSV 63

Query: 63  DQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSS 109
           D N H  ++SL  F+ A+    +  S+TIHLL   +QM L F+  S
Sbjct: 64  D-NDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108

[Close]

BLAST of Lcy02g010900 vs. NCBI nr
Match: KAA0045262.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK28688.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-12
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 3   MNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSI 62
           + ++N DPL++ATS    ++ D A L+FTP +  IIAS+ S R +ATL+LS ++FTT+S+
Sbjct: 4   VKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTTFSV 63

Query: 63  DQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSS 109
           D N H  ++SL  F+ A+    +  S+TIHLL   +QM L F+  S
Sbjct: 64  D-NDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPS 108

[Close]

BLAST of Lcy02g010900 vs. NCBI nr
Match: KAG7013721.1 (hypothetical protein SDJN02_23888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-11
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 3   MNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSI 62
           + + + DPLMEATS+   ++N EA L+F+  + ++I S  S R VAT ++S RFF  Y +
Sbjct: 4   VRLHHFDPLMEATSILAQISN-EADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYFV 63

Query: 63  DQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSSHT 111
           D+N H  R+SL  FY+A+       S+TIH   T  +M L FE+S+HT
Sbjct: 64  DRN-HSSRVSLQSFYNAMYAGIVFSSMTIHFPETTSRMVLQFESSNHT 109

[Close]

BLAST of Lcy02g010900 vs. NCBI nr
Match: XP_023006010.1 (uncharacterized protein LOC111498887 [Cucurbita maxima])

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-11
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 3   MNVENLDPLMEATSLFTHLTNDEAYLEFTPWRLTIIASNHSSRIVATLKLSFRFFTTYSI 62
           + + + DPL EATSL   ++N EA L+F+  + ++I S  S R VAT ++S RFF  YS+
Sbjct: 4   VRLHHFDPLREATSLLAQISN-EADLKFSSSKFSLITSYPSRRFVATFQISHRFFANYSV 63

Query: 63  DQNPHRYRISLHPFYHALSVARNSHSITIHLLPTIHQMTLTFENSSHT 111
           D+N H  R+SL  FY A+       S+TIH   T  +M L FE+S+HT
Sbjct: 64  DRN-HSSRVSLQSFYDAMYDGIFFSSMTIHFPETTSRMVLQFESSNHT 109

The following BLAST results are available for this feature:

BLAST of Lcy02g010900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g010900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8J1	3.4e-13	45.79	uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=...	[more]
A0A5D3DZ07	9.8e-13	43.40	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CL88	9.8e-13	43.40	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]
A0A0A0K902	2.4e-11	39.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020220 PE=4 SV=1	[more]
A0A1S4E4N8	4.1e-11	44.86	uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=...	[more]

BLAST of Lcy02g010900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458682.1	7.0e-13	45.79	PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]	[more]
XP_008464344.1	2.0e-12	43.40	PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]	[more]
KAA0045262.1	2.0e-12	43.40	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK286...	[more]
KAG7013721.1	1.7e-11	42.59	hypothetical protein SDJN02_23888, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023006010.1	3.8e-11	43.52	uncharacterized protein LOC111498887 [Cucurbita maxima]	[more]

BLAST of Lcy02g010900 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..123 e-value: 9.0E-13 score: 50.1
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 23..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g010900.1	Lcy02g010900.1	mRNA