Lcy02g005740 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g005740
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	TATA-binding protein-associated factor 2N-like
Location	Chr02: 7420192 .. 7422677 (-)
RNA-Seq Expression	Lcy02g005740
Synteny	Lcy02g005740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGCCATTCTTTCTTCTTCCTTCCTTCACTTTTTTTCTATACCACTTCAATTCCCTTCACTTTTTTTTTTCTTCTTCCATTAAGGTTTCTTCTCCATCTTCTTCTCTTTTTTTGACACCATTTTTCTTCTTTCCTATTCAAATTTTAGGACCAGTTTAGTGTCACGATGTTTCGTTTTCTCTCTTGCGTTATTTCTCATTACCAGTGTTCCTTATTTCTTCTCTTTCAAAAAAAACAAGGAACGAAATTAGTGCCTTTTATTTTATTTAAGTTATGTTATAAGTTTGGTCTTTGAATTTTTAAAGTTGTGTTTCATAAATTCCTAAACTTTAAAAATGTTTAGTCTATTTCTAAACTTTTAAGGTTGAGTTTACTAGTTTCTTAATTTTAAAAAAGTGTTTTATAGATTTTGAACCGTCTAAAAGTCATTTAGCTTTAAAATGTCTCTCTTAAATCAAAGATTTATTAGATATAAAATTGAAAATTCAAAAAATTATGAGACATTTTTTAAACTTCAAGAAAACATTAGACATAATTTTCGGGAACTATAGTCAATTATTATACATTTTTTAGTGTCGGTTTGAAATGACTTTTTAAGTGTTTAAAAATATTTTTGTTTCCACTTAAAAACACTTTTTTTTAACACTTTTAAGGTCATTTTAAACGGGTCTCTAAAATTATTTAGAGAATTTTAAAAGTTTTATGATTAAACTTTGTAATTTAACTTTTTTTTTTTTTTTTTTTTGAGGGAGTGTATAATAAATAACCTTTTCTCCTTCCCTTCACATTTTAATATGAAAAAAAAATGTAATTTTTGAATTAATAAAATTATTGTTGACAATTAGAAATTAATTTTGCAGAGAGAAGAGAAAGAGAAGATGAGCCGACCGGGAGACTGGAACTGCAGGTCGTGCCAGCACCTGAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGCGACCCCAAGTCCGGCGGCGGCGGCGGCGACTTCGGCGGTCTGATGAACGGCGGCGGAAGGGGCGGGTCTGGGTTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTACTGCAGCATAGGAAACTGTGGAGCCCACAATTTCGCAAGCCGGTCGAGCTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGACATGTCGCGCTCTCGAGGAATGTCCCCTTTTGGTTTTGCAAATCCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGTGCCAGGTACAATATTTAACTTTTTACCAACCACCATCAAATCATTTGAATCACAGATTCTCGGTCATAAGTTCAAATTTTATGTCGGTTGATCTATGTTTGTGTTGGTTTTTACCGACCACCATTATGTTTTTTACAAAAAGAAAAAAAAAAAATTCTAATGAGTAAAGGAAGAAGAGATTTTTTTTTTTCTTTTTAATAAATAATTATTAAATTTTTAACGATAATGAAAGTAAGTATATGGTTGTTATGAAACTAAACATAGTTGTTAAAAATTTAACTATTTATTAAAAAGAAAAAGAAAAACCGGTACTATGATAGCCAAGTAGTCAAGTCACGTAAGTATATATAATAATCAATTAACCAAAGTAGCTAAGTAGCCAACTATATATATTTACATGACTTGACTGCTATATTTAATAAATGAGTAGTAACGTCTCTTGATTTTTGTATTTATTAAGAATTAAATACGTAAGTAAACCTTTAGAAACAACTCAAATCACATGGAACAACCAGTACTATGATTGTGGTCTTTTTGCATGCGCCAATTTACTAAATTTATTTACGTATTTAAAAGCTTTAGTAACTCAATTTATTTTTAGAAAAAAAAATCTCTATCTCTAGATTCTCACTTGAATGACTACATGTGAAAATGCAGGTCCGGATGCAATGAACATAACTTCGCAAGCAGGATGGAATGCTTCAGATGCAGTGCGCCAAAAGACTCATACTAACAAAGCTAGCCAAGCCACAATCCTCCTTCATCATCAAGTTTTGAGTGTGTACGTATTGTTTAAAAATAGCCATTACAATATAACTGTCACACTCGTAACTGTTATAACGGGTATATATGCATAACCATAAGAAACATAGTTTTAAATGATTTTCTATTTTATTAAAAATTATAAAAGTCACATTAATGTTAAATAATTTCTAATTTTTGTTTTTTATTTTTTATTTTTTATTTTTTTTTCAGGTATGCTTCCAACTGAGCAAACTTCAAAGAGACTTCATAACCTGCACTAGCTTTCTTTCTTCTTCTTCCCTCTCTCTTTTGGTTTTTGTTTTTGTAACTTTTTTTTTTCTTTTCTTTTGTGGGTGCTGTTATTTCTGTGATGAAAAATTGAGATATTGTCCAAAAATCAATGTTCATTCTCTGTTGCTGTAATATCTCTTTATTAATTAATTAACTTTTTCTAAGCATAATGAAAC

mRNA sequence

ATCGCCATTCTTTCTTCTTCCTTCCTTCACTTTTTTTCTATACCACTTCAATTCCCTTCACTTTTTTTTTTCTTCTTCCATTAAGAGAGAAGAGAAAGAGAAGATGAGCCGACCGGGAGACTGGAACTGCAGGTCGTGCCAGCACCTGAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGCGACCCCAAGTCCGGCGGCGGCGGCGGCGACTTCGGCGGTCTGATGAACGGCGGCGGAAGGGGCGGGTCTGGGTTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTACTGCAGCATAGGAAACTGTGGAGCCCACAATTTCGCAAGCCGGTCGAGCTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGACATGTCGCGCTCTCGAGGAATGTCCCCTTTTGGTTTTGCAAATCCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGTGCCAGGTCCGGATGCAATGAACATAACTTCGCAAGCAGGATGGAATGCTTCAGATGCAGTGCGCCAAAAGACTCATACTAACAAAGCTAGCCAAGCCACAATCCTCCTTCATCATCAAGTTTTGAGTGTGTATGCTTCCAACTGAGCAAACTTCAAAGAGACTTCATAACCTGCACTAGCTTTCTTTCTTCTTCTTCCCTCTCTCTTTTGGTTTTTGTTTTTGTAACTTTTTTTTTTCTTTTCTTTTGTGGGTGCTGTTATTTCTGTGATGAAAAATTGAGATATTGTCCAAAAATCAATGTTCATTCTCTGTTGCTGTAATATCTCTTTATTAATTAATTAACTTTTTCTAAGCATAATGAAAC

Coding sequence (CDS)

ATGAGCCGACCGGGAGACTGGAACTGCAGGTCGTGCCAGCACCTGAACTTCCAGAGGAGGGACATGTGCCAGCGCTGCGGCGACCCCAAGTCCGGCGGCGGCGGCGGCGACTTCGGCGGTCTGATGAACGGCGGCGGAAGGGGCGGGTCTGGGTTCGGGTACGGCGGCTCCGATGTGAGGCCCGGCGACTGGTACTGCAGCATAGGAAACTGTGGAGCCCACAATTTCGCAAGCCGGTCGAGCTGCTTCAAATGTGGGGCTTTCAAAGACGACATGTCGGCTGCAGCAGGAGGCTTCGACTTCGACATGTCGCGCTCTCGAGGAATGTCCCCTTTTGGTTTTGCAAATCCCGCCCGTACTGGTGCCTCCGCTTGGAAATCTGGTGACTGGATTTGTGCCAGGTCCGGATGCAATGAACATAACTTCGCAAGCAGGATGGAATGCTTCAGATGCAGTGCGCCAAAAGACTCATACTAA

Protein sequence

MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANPARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY

Homology

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BLAST of Lcy02g005740 vs. ExPASy Swiss-Prot
Match: O13801 (Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC17H9.04c PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.5e-06
Identity = 45/155 (29.03%), Postives = 58/155 (37.42%), Query Frame = 0


Query: 3   RPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVRPG 62
           RPGDWNC  C   NFQRR  C RC  P     G        G       F YG       
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRCSFP-----GPTHVSAATGSNTFSPDFPYGN------ 402

Query: 63  DWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANPART-- 122
               S GN  +H  A+               +       D+    G +     + +R+  
Sbjct: 403 ----SYGNGSSHFIANYGGSVH--------HSNENTMQSDLQHQNGNNAVNHHHSSRSFG 462

Query: 123 GASAWKSGDWICARSGCNEHNFASRMECFRCSAPK 156
           G   +++GDW C   GC  HNFA  + C RC A +
Sbjct: 463 GNVPFRAGDWKCGSEGCGYHNFAKNVCCLRCGASR 474

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BLAST of Lcy02g005740 vs. ExPASy TrEMBL
Match: A0A6J1GA82 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 153/162 (94.44%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGG DFG L+NGGGRGGSGFGYGGSDVR
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDM RSRG+SPFGFANP   
Sbjct: 241 PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 300

Query: 121 -ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 159
            ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 301 AARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 342

[Close]

BLAST of Lcy02g005740 vs. ExPASy TrEMBL
Match: A0A6J1G9I4 (TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452195 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 1.8e-84
Identity = 153/162 (94.44%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGG DFG L+NGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDM RSRG+SPFGFANP   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 -ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 159
            ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Lcy02g005740 vs. ExPASy TrEMBL
Match: A0A6J1K9C2 (periodic tryptophan protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493437 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.2e-84
Identity = 152/162 (93.83%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGG DFG L+NGGGRGGSGFGYGGSDVR
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDM RSRG+SPFGFANP   
Sbjct: 241 PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 300

Query: 121 -ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 159
            ARTG SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 301 AARTGTSAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 342

[Close]

BLAST of Lcy02g005740 vs. ExPASy TrEMBL
Match: A0A6J1KI51 (TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111493437 PE=4 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 5.2e-84
Identity = 152/162 (93.83%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGG DFG L+NGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDM RSRG+SPFGFANP   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 -ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 159
            ARTG SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AARTGTSAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Lcy02g005740 vs. ExPASy TrEMBL
Match: A0A6J1DJ84 (TATA-binding protein-associated factor 2N-like OS=Momordica charantia OX=3673 GN=LOC111021028 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 140/162 (86.42%), Postives = 144/162 (88.89%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRD CQRCGDPKS  GG DFGGLMNGGGRGGS FGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDTCQRCGDPKS--GGADFGGLMNGGGRGGSAFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFAN---- 120
           PGDWYC++GNCGAHNFASRSSCFKCGAFKDDM    GGFDFD+ RSRG S FGFAN    
Sbjct: 61  PGDWYCTVGNCGAHNFASRSSCFKCGAFKDDM--LGGGFDFDLPRSRGTS-FGFANGTGA 120

Query: 121 PARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 159
             RTGASAWKSGDWICARSGCNEHNFASRMECFRCSAP+DSY
Sbjct: 121 GGRTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPRDSY 157

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BLAST of Lcy02g005740 vs. NCBI nr
Match: XP_022948549.1 (periodic tryptophan protein 2 isoform X2 [Cucurbita moschata] >XP_022948550.1 periodic tryptophan protein 2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 3.7e-84
Identity = 153/162 (94.44%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGG DFG L+NGGGRGGSGFGYGGSDVR
Sbjct: 181 MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 240

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDM RSRG+SPFGFANP   
Sbjct: 241 PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 300

Query: 121 -ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 159
            ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 301 AARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 342

[Close]

BLAST of Lcy02g005740 vs. NCBI nr
Match: XP_022948551.1 (TATA-binding protein-associated factor 2N isoform X3 [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 3.7e-84
Identity = 153/162 (94.44%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGG DFG L+NGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDM RSRG+SPFGFANP   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 -ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 159
            ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Lcy02g005740 vs. NCBI nr
Match: XP_023525213.1 (transcription initiation factor TFIID subunit 15b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 321.2 bits (822), Expect = 4.9e-84
Identity = 153/163 (93.87%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGG DFG L+NGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDM RSRG+SPFGFANP   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 --ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 159
             ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 163

[Close]

BLAST of Lcy02g005740 vs. NCBI nr
Match: KAG7036500.1 (hypothetical protein SDJN02_00117 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 321.2 bits (822), Expect = 4.9e-84
Identity = 153/163 (93.87%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGG DFG L+NGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDM RSRG+SPFGFANP   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 --ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 159
             ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AAARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 163

[Close]

BLAST of Lcy02g005740 vs. NCBI nr
Match: XP_022998918.1 (TATA-binding protein-associated factor 2N isoform X3 [Cucurbita maxima])

HSP 1 Score: 320.1 bits (819), Expect = 1.1e-83
Identity = 152/162 (93.83%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR 60
           MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGG DFG L+NGGGRGGSGFGYGGSDVR
Sbjct: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGCDFGALLNGGGRGGSGFGYGGSDVR 60

Query: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANP--- 120
           PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDM RSRG+SPFGFANP   
Sbjct: 61  PGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMPRSRGLSPFGFANPAAA 120

Query: 121 -ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 159
            ARTG SAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY
Sbjct: 121 AARTGTSAWKSGDWICARSGCNEHNFASRMECFRCSAPKDSY 162

[Close]

BLAST of Lcy02g005740 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-54
Identity = 110/168 (65.48%), Postives = 120/168 (71.43%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGG---DFGGLMNGGGRGGSGFGY-GG 60
           MSRPGDWNCRSC HLNFQRRD CQRCGD +SG GG    DFG   N GGR  S FG+  G
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFG---NFGGRAMSAFGFTTG 60

Query: 61  SDVRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGG--------FDFDMSRSRG 120
           SDVRPGDWYC++GNCG HNFASRS+CFKCG FKD+  A  GG        FD D+ RSR 
Sbjct: 61  SDVRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSR- 120

Query: 121 MSPFGFANPARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD 157
                   P   G S+WKSGDWIC R GCNEHNFASRMECFRC+AP+D
Sbjct: 121 -------VPGNGGRSSWKSGDWICTRIGCNEHNFASRMECFRCNAPRD 157

[Close]

BLAST of Lcy02g005740 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 191.0 bits (484), Expect = 7.1e-49
Identity = 100/165 (60.61%), Postives = 116/165 (70.30%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRG-GSGFGYG-GSD 60
           M+RPGDWNCR C HLNFQRRD CQRC +P+ GG   D   L   GGR   S FG+  G D
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDL--LSGFGGRPVSSSFGFNTGPD 60

Query: 61  VRPGDWYCSIGNCGAHNFASRSSCFKCGAFKDDMS-----AAAGGFDFDMSRSRGMSPFG 120
           VRPGDWYC++G+CG HNFA+RSSCFKCGA KD+ S     A  G  D ++   RG+  FG
Sbjct: 61  VRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFG 120

Query: 121 FANP--ARTGASAWKSGDWICARSGCNEHNFASRMECFRCSAPKD 157
            ++     TG S WKSGDWIC RSGCNEHNFASR ECFRC+APK+
Sbjct: 121 GSSSGGGGTGRSPWKSGDWICPRSGCNEHNFASRSECFRCNAPKE 163

[Close]

BLAST of Lcy02g005740 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-28
Identity = 61/152 (40.13%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 5   GDWNCRSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVRPGDW 64
           GDW C +CQH NF++R+ CQ+CG PK       FGG+        S + Y  ++V  GDW
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK-------FGGV------DVSTYLYNRTEVMAGDW 65

Query: 65  YCSIGNCGAHNFASRSSCFKCGAFKDDMSAAAGGFDFDMSRSRGMSPFGFANPARTGASA 124
           YC   NCG+HN+ASR+SC++CG  K + +           +  G     + N        
Sbjct: 66  YCGALNCGSHNYASRTSCYRCGMIKVEYT----------EQYYGAQMVAYGNDGAACPPG 125

Query: 125 WKSGDWICARSGCNEHNFASRMECFRCSAPKD 157
           WK+GDW+C R GC  HN+ASR ECF+C   +D
Sbjct: 126 WKTGDWVCPRVGCGVHNYASRAECFKCKTTRD 134

[Close]

BLAST of Lcy02g005740 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.5e-08
Identity = 57/216 (26.39%), Postives = 78/216 (36.11%), Query Frame = 0


Query: 1   MSRPGDWNCRSCQHLNFQRRDMCQRCGDPKSGGG-------GGDFGGLMNGGGRGGSGFG 60
           + R GDW C  C + N+  R+ C++CG  K           G      ++   RG     
Sbjct: 46  LPRIGDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHD 105

Query: 61  YGGS---------------DVRPGDWYCSIGNCGAHNFASRSSCFKCGAF------KDDM 120
             GS               + R GDW C    CG HN++SR  C KC            +
Sbjct: 106 QPGSLLAFSNATNQASVHKEWRSGDWIC---RCGFHNYSSRIQCKKCNEIAPLALGTKRL 165

Query: 121 SAAAGGFDFDMSRSR-----------------GMS---------PFGFANPART------ 157
           ++ A   ++D  R                   GMS         P  F     T      
Sbjct: 166 ASEALAHEWDSKRLNQGYTSMQTQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGM 225

[Close]

BLAST of Lcy02g005740 vs. TAIR 10
Match: AT1G50300.1 (TBP-associated factor 15 )

HSP 1 Score: 41.6 bits (96), Expect = 6.9e-04
Identity = 35/98 (35.71%), Postives = 44/98 (44.90%), Query Frame = 0


Query: 5   GDWNC--RSCQHLNFQRRDMCQRCGDPKSGGGGGDFGGLMNGGGRGGSGFGYGGSDVR-- 64
           GDW C   SC ++NF  R +C RCG  +  G  G  G +  G GRG  G   GG+  +  
Sbjct: 137 GDWMCPNTSCTNVNFAFRGVCNRCGTARPAGASG--GSMGAGRGRGRGGGADGGAPGKQP 196

Query: 65  ---------PGDWYCSIGNCGAHNFASRSSCFKCGAFK 90
                    P DW C +  CG  N+A R  C  C   K
Sbjct: 197 SGAPTGLFGPNDWACPM--CGNVNWAKRLKCNICNTNK 230

The following BLAST results are available for this feature:

BLAST of Lcy02g005740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O13801	5.5e-06	29.03	Uncharacterized RNA-binding protein C17H9.04c OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of Lcy02g005740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GA82	1.8e-84	94.44	periodic tryptophan protein 2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1G9I4	1.8e-84	94.44	TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita moschata OX=36...	[more]
A0A6J1K9C2	5.2e-84	93.83	periodic tryptophan protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1KI51	5.2e-84	93.83	TATA-binding protein-associated factor 2N isoform X3 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1DJ84	2.4e-73	86.42	TATA-binding protein-associated factor 2N-like OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Lcy02g005740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948549.1	3.7e-84	94.44	periodic tryptophan protein 2 isoform X2 [Cucurbita moschata] >XP_022948550.1 pe...	[more]
XP_022948551.1	3.7e-84	94.44	TATA-binding protein-associated factor 2N isoform X3 [Cucurbita moschata]	[more]
XP_023525213.1	4.9e-84	93.87	transcription initiation factor TFIID subunit 15b-like [Cucurbita pepo subsp. pe...	[more]
KAG7036500.1	4.9e-84	93.87	hypothetical protein SDJN02_00117 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022998918.1	1.1e-83	93.83	TATA-binding protein-associated factor 2N isoform X3 [Cucurbita maxima]	[more]

BLAST of Lcy02g005740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15680.1	1.1e-54	65.48	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	7.1e-49	60.61	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	1.1e-28	40.13	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	3.5e-08	26.39	zinc finger (Ran-binding) family protein	[more]
AT1G50300.1	6.9e-04	35.71	TBP-associated factor 15	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 128..154 e-value: 2.1E-5 score: 34.0 coord: 62..88 e-value: 9.5E-5 score: 31.8 coord: 5..29 e-value: 9.1E-5 score: 31.8
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 3..31 e-value: 0.0014 score: 17.9 coord: 126..155 e-value: 1.2E-10 score: 40.5 coord: 60..87 e-value: 1.3E-5 score: 24.4
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 130..151
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 64..85
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 7..26
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 60..91 score: 9.890478
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.777556
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 126..157 score: 10.545425
None	No IPR available	GENE3D	4.10.1060.10		coord: 2..33 e-value: 2.8E-10 score: 41.3 coord: 119..157 e-value: 7.7E-13 score: 49.5 coord: 56..91 e-value: 2.8E-12 score: 47.7
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..157
None	No IPR available	PANTHER	PTHR23111:SF74	OS02G0203700 PROTEIN	coord: 1..157
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 52..91
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 120..156
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g005740.1	Lcy02g005740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding